Physical, chemical and microbiological properties of an Andisol as related to land use and tillage practice

The effects of land use and management practice on soil physical, chemical and microbiological properties may provide essential information for assessing sustainability and environmental impact. This study compared the effects of 41 years of no-tillage (NT) with continuous apple orchard, with those of conventional tillage (CT) with wheat–soybean rotation and another of puddling (PD) with continuous rice on the characteristics of a pumice Andisol in a temperate region of northern Japan. Higher values for bulk density, penetration resistance, pH, C/N ratio, exchangeable Na (X-Na), Fe, and Mn were observed for PD than NT and CT. On the other hand, organic matter, EC, N, exchangeable K (X-K), exchangeable Ca (X-Ca) and Cu were significantly higher for NT than CT and PD. Highest content of Zn was found in CT compared to other practices. The three-phase composition at pF 2.0 was significantly affected by land use and tillage practices. The solid phase and liquid phase were greater under PD than under NT and CT, while air phase was greater under CT than under NT and PD. Significantly higher values for saturated hydraulic conductivity was found in CT than NT and PD. Total phospholipid fatty acid (PLFA) and PLFA for bacteria, aerobes and cyanobacteria were remarkably higher in NT than CT and PD, regardless of depth. On the other hand, PLFA for methane-oxidizing bacteria, sulfate-reducing bacteria and mycorrhizae were significantly higher in CT than NT and PD. PLFA for fungi was significantly higher in surface (0–10 cm) soils than subsurface (10–20 cm) soils regardless of treatments. Highest bacterial and fungal diversity evaluated by DNA band number in DGGE analysis based on PCR amplification of 16S rDNA and 18S rDNA fragments, respectively, were observed in surface soil of PD. The result suggests a linkage between microbial community and tillage practices in temperate Andisol. This study also justifies the need of measuring soil characteristics based on soil microbial communities.     

No-till soil management increases microbial biomass and alters community profiles in soil aggregates

Aggregation is important for soil functioning, providing physical protection of organic matter and microbial inhabitants. Tillage disrupts aggregates, increases wind and water erosion of soils and exposes formerly protected organic matter to decomposition and losses. Microbial biomass and community dynamics in dry-sieved aggregate-size classes from long-term no-till (NT) and conventionally tilled (CT) soils were examined using phospholipid fatty acid analysis (PLFA). Bacterial, fungal, and total biomass were up to 32% greater in NT compared to CT aggregates. Aggregate size also affected microbial biomass, which was highest in the 1–2 mm size class. Arbuscular mycorrhizal fungi (AMF) were particularly affected by tillage disturbance with increases of 40–60% among aggregate-size classes in NT vs. CT, but glomalin related soil protein concentration was not different between tillage treatments or among aggregate-size classes. Bacterial stress biomarkers were higher in CT than NT aggregates but were not significantly correlated with total C, total N or C:N ratio, indicating that the physiological status of bacteria within aggregates was not simply governed by the quantity of available resources. Ordination analysis of PLFA profiles demonstrated a shift in microbial community structure between NT and CT aggregates, correlated with AMF abundance in NT aggregates and increased bacterial stress biomarkers in CT aggregates. Our results demonstrated greater microbial biomass and altered microbial community structure in NT vs. CT aggregates. This work demonstrates that tillage management influences microbial community structure within aggregates and may provide a potential explanation for differences in process rates observed in NT vs. CT soils. Further research into the processes that govern community structure in aggregates from NT and tilled soils is needed to better understand how the interaction of microorganisms with their physical environment affects nutrient turnover and availability.     

Experimentally induced effects of heavy metal on microbial activity and community structure of forest mor layers

This study compared the toxic effects of adding chromium (Cr), zinc (Zn), lead (Pb), molybdenum (Mo), nickel (Ni), and cadmium (Cd) at three dose levels to mor layer samples in laboratory experiments. Microbial activity in the form of soil respiration was monitored for 64 days. At the end of the experimental period, the composition of the soil microbial community structure was analysed by phospholipid fatty acid (PLFA) analysis. The metals added induced changes in the microbial community structure and affected respiration negatively, indicating toxicity. The microbial community structure (principal component analysis of the PLFA pattern) for all metals was significantly related to microbial activity (cumulative respiration), indicating intimate links between microbial community structure and activity. The most striking result in this study was that the shift in the microbial community because of metal stress was similar for all metals. Thus, the PLFA i16:0 increased most in relative abundance in metal-polluted soils, followed by other PLFAs indicative of Gram-positive bacteria (10Me16:0, 10Me17:0, 10Me18:0, a17:0 and br18:0). The PLFA 16:1ω5 was consistently negatively affected by metal stress, as were the PLFAs 18:1, 18:1ω7 and 19:1a. However, a significant separation between Cr- and Cd-polluted soils was observed in the response of the PLFA cy19:0, which decreased in abundance with Cr stress, and increased with Cd stress. Furthermore, the PLFA 18:2w6, indicating fungi, only increased with Cr and Zn stress. The effective doses of the metals, ranked with regard to background metal concentrations, decreased in the order: Zn > Cr > Pb > Mo > Ni > Cd. We concluded that interpretation of results of microbial activity from experiments of metal toxicity should include microbial structural patterns and background metal concentrations.     

Spatial distributions of soil chemical and physical properties prior to planting soybean in soil under ridge‐, no‐ and conventional‐tillage in a maize–soybean rotation

Detailed information on the profile distributions of agronomically important soil properties in the planting season can be used as criteria to select the best soil tillage practices. Soil cores (0–60 cm) were collected in May, 2012 (before soybean planting), from soil transects on a 30‐yr tillage experiment, including no‐tillage (NT), ridge tillage (RT) and mouldboard plough (MP) on a Brookston clay loam soil (mesic Typic Argiaquoll). Soil cores were taken every 19 cm across three corn rows and these were used to investigate the lateral and vertical profile characteristics of soil organic carbon (SOC), pH, electrical conductivity (EC), soil volumetric water content (SWC), bulk density (BD), and penetration resistance (PR). Compared to NT and MP, the RT system resulted in greater spatial heterogeneity of soil properties across the transect. Average SOC concentrations in the top 10 cm layer were significantly greater in RT than in NT and MP (P = 0.05). NT soil contained between 0.8 and 2.5% (vol/vol) more water in the top 0–30 cm than RT and MP, respectively. MP soil had lower PR and BD in the plough layer compared to NT and RT soils, with both soil properties increasing sharply with depth in MP. The RT had lower PR relative to NT in the upper 35 cm of soil on the crop rows. Overall, RT was a superior conservation tillage option than NT in this clay loam soil; however, MP had the most favourable soil conditions in upper soil layers for early crop development across all treatments.     

Physiological, biochemical and molecular responses of the soil microbial community after afforestation of pastures with Pinus radiata

Afforestation and deforestation are key land-use changes across the world, and are considered to be dominant factors controlling ecosystem functioning and biodiversity. However, the responses of soil microbial communities to these land-use changes are not well understood. Because changes in soil microbial abundance and community structure have consequences for nutrient cycling, C-sequestration and long-term sustainability, we investigated impacts of land-use change, age of stand and soil physico-chemical properties on fungal and bacterial communities and their metabolic activities. This study was carried out at four sites in two geographical locations that were afforested on long-established pastures with Pinus radiata D. Don (pine). Two of the sites were on volcanic soils and two on non-volcanic soils and stand age ranged from 5 to 20 y. Microbial communities were analysed by biochemical (phospho-lipid fatty acids; PLFA) and molecular (multiplex-terminal restriction fragment length polymorphism; M-TRFLP) approaches. Both site and stand age influenced microbial properties, with changes being least detectable in the 5-y-old stand. Land use was a key factor influencing soil metabolic activities as measured by physiological profiling using MicroResp. Pasture soils had higher microbial biomass (P < 0.001), and metabolic activities (P < 0.001), and basal respiration rates were up to 2.8-times higher than in the pine soils. Microbial abundance analysis by PLFA showed that the fungal to bacterial ratio was higher in the pine soils (P < 0.01). Community analysis suggested that soil bacterial communities were more responsive to site (principal component 1; P < 0.001) than to land use (principal component 5; P < 0.001). In contrast, the fungal community was more affected by land-use change (principal component 1; P < 0.001) than by site, although site still had some influence on fungal community structure (principal component 2; P < 0.001). Redundancy analysis also suggested that bacterial and fungal communities responded differently to various soil abiotic properties, land-use change and location of sites. Overall, our results indicate that the change in land use from pasture to P. radiata stands had a direct impact on soil fungal communities but an indirect effect, through its effects on soil abiotic properties, on bacterial communities. Most of the changes in bacterial communities could be explained by altered soil physico-chemical properties associated with afforestation of pastures.     

Soil organic matter in soil depth profiles: Distinct carbon preferences of microbial groups during carbon transformation

This study investigates how carbon sources of soil microbial communities vary with soil depth. Microbial phospholipid fatty acids (PLFA) were extracted from 0–20, 20–40 and 40–60 cm depth intervals from agricultural soils and analysed for their stable carbon isotopes (δ¹³C values). The soils had been subjected to a vegetation change from C3 (δ¹³C≈?29.3‰) to C4 plants (δ¹³C≈?12.5‰) 40 years previously, which allowed us to trace the carbon flow from plant-derived input (litter, roots, and root exudates) into microbial PLFA. While bulk soil organic matter (SOM) reflected ≈12% of the C4-derived carbon in top soil (0–20 cm) and 3% in deeper soil (40–60 cm), the PLFA had a much higher contribution of C4 carbon of about 64% in 0–20 cm and 34% in 40–60 cm. This implies a much faster turnover time of carbon in the microbial biomass compared to bulk SOM. The isotopic signature of bulk SOM and PLFA from C4 cultivated soil decreases with increasing soil depth (?23.7‰ to ?25.0‰ for bulk SOM and ?18.3‰ to ?23.3‰ for PLFA), which demonstrates decreasing influence of the isotopic signature of the new C4 vegetation with soil depth. In terms of soil microbial carbon sources this clearly shows a high percentage of C4 labelled and thus young plant carbon as microbial carbon source in topsoils. With increasing soil depth this percentage decreases and SOM is increasingly used as microbial carbon source. Among all PLFA that were associated to different microbial groups it could be observed that (a) depended on availability, Gram-negative and Gram-positive bacteria prefer plant-derived carbon as carbon source, however, (b) Gram-positive bacteria use more SOM-derived carbon sources while Gram-negative bacteria use more plant biomass. This tendency was observed in all three-depth intervals. However, our results also show that microorganisms maintain their preferred carbon sources independent on soil depth with an isotopic shift of 3–4‰ from 0–20 to 40–60 cm soil depth.     

长期秸秆覆盖对免耕稻-麦产量、土壤氮组分及微生物群落的影响

为探究长期秸秆覆盖对免耕区作物产量、土壤氮素组分及微生物群落特征的影响,以稻–麦定位免耕试验为研究对象,选取了其中免耕且秸秆移除和免耕且秸秆覆盖2个处理,于试验开展第12年（2018年）小麦收获后,统计分析近五年产量数据,并采集各处理0～5、5～10、10～20、20～30 cm的土壤样品,测定土壤全氮及活性氮组分,利用磷脂脂肪酸（PLFA）方法表征土壤微生物群落。结果表明：（1）秸秆覆盖显著提高了小麦产量（增幅为6.49%）,对水稻产量影响不显著。（2）秸秆覆盖对土壤氮组分的影响略有差异：它显著提高了土壤0～5 cm全氮、硝态氮和铵态氮以及0～10 cm颗粒有机氮、0～5 cm和10～20 cm可溶性有机氮含量,对微生物生物量氮无显著影响;它提高了0～5 cm和10～20 cm可溶性有机氮占全氮的比例,对其他组分占全氮比例无显著影响。（3）秸秆覆盖显著提高了土壤微生物总PLFA和细菌PLFA丰度,对真菌PLFA和放线菌PLFA无影响,降低了土壤真菌/细菌比;微生物生物量氮、土壤全氮、颗粒有机碳/颗粒有机氮比是显著影响土壤微生物群落组成的关键土壤环境因子。（4）无论秸秆覆盖与否,土壤全...     

Soil microbial biomass and activity in Chinese tea gardens of varying stand age and productivity

Tea (Camellia sinensis) is a globally important crop and is unusual because it both requires an acid soil and acidifies soil. Tea stands tend to be extremely heavily fertilized in order to improve yield and quality, resulting in a great potential for diffuse pollution. The microbial ecology of tea soils remains poorly understood; an improved understanding is necessary as processes affecting nutrient availability and loss pathways are microbially mediated. We therefore examined the relationships between soil characteristics (pH, organic C, total N, total P, available P, exchangeable Al), the soil microbial biomass (biomass C, biomass ninhydrin-N, ATP, phospholipid fatty acids—PLFAs) and its activities (respiration, net mineralization and nitrification). At the Tea Research Institute, Hangzhou (TRI), we compared fields of different productivity levels (low, medium and high) and at Hongjiashan village (HJS) we compared fields of different stand age (9, 50 and 90 years). At both sites tea soils were compared with adjacent forest soils. At both sites, soil pH was highest in the forest soil and decreased with increasing productivity and age of the tea stand. Soil microbial biomass C and biomass ninhydrin-N were significantly affected by tea production. At TRI, microbial biomass C declined in the order forest>low>high>middle production and at HJS in the order stand age 50>age 9>forest>age 90. Soil pH had a strong influence on the microbial biomass, demonstrated by positive linear correlations with: microbial biomass C, microbial biomass ninhydrin-N, the microbial biomass C:organic C ratio, the microbial biomass ninhydrin-N:total N ratio, the respiration rate and specific respiration rate. Above pH_(KCl) 3.5 there was net N mineralization and nitrification, and below this threshold some samples showed net immobilization of N. A principal component (PC) analysis of PLFA data showed a consistent shift in the community composition with productivity level and stand age. The ratio of fungal:bacterial PLFA biomarkers was negatively and linearly correlated with specific respiration in the soils from HJS (r²=0.93, p=0.03). Our results demonstrate that tea cultivation intensity and duration have a strong impact on the microbial community structure, biomass and its functioning, likely through soil acidification and fertilizer addition.     

Effect of Long-Term Soil Management on the Mutual Interaction Among Soil Organic Matter, Microbial Activity and Aggregate Stability in a Vineyard

Vineyard management practices to enhance soil conservation principally focus on increasing carbon (C) input, whereas mitigating impacts of disturbance through reduced tillage has been rarely considered. Furthermore, information is lacking on the effects of soil management practices adopted in the under-vine zone on soil conservation. In this work, we evaluated the long-term effects (22 years) of alley with a sown cover crop and no-tillage (S + NT), alley with a sown cover crop and tillage (S + T), and under-vine zone with no vegetation and tillage (UV) on soil organic matter (SOM), microbial activity, aggregate stability, and their mutual interactions in a California vineyard in USA. Vegetation biomass, microbial biomass and activity, organic C and nitrogen (N) pools, and SOM size fractionation and aggregate stability were analysed. Soil characteristics only partially reflected the differences in vegetation biomass input. Organic C and N pools and microbial biomass/activity in S + NT were higher than those in S + T, while the values in UV were intermediate between the other two treatments. Furthermore, S + NT also exhibited higher particulate organic matter C in soil. No differences were found in POM C between S + T and UV, but the POM fraction in S + T was characterized by fresher material. Aggregate stability was decreased in the order: S + NT > UV > S + T. Tillage, even if shallow and performed infrequently, had a negative effect on organic C and N pools and aggregate stability. Consequently, the combination of a sown cover crop and reduced tillage still limited SOM accumulation and reduced aggregate stability in the surface soil layer of vineyards, suggesting relatively lower resistance of soils to erosion compared to no-till systems.     

Distinct microbial and faunal communities and translocated carbon in Lumbricus terrestris drilospheres

Lumbricus terrestris is a deep-burrowing anecic earthworm that builds permanent, vertical burrows with linings (e.g., drilosphere) that are stable and long-lived microhabitats for bacteria, fungi, micro- and mesofauna. We conducted the first non-culture based field study to assess simultaneously the drilosphere (here sampled as 0–2 mm burrow lining) composition of microbial and micro/mesofaunal communities relative to bulk soil. Our study also included a treatment of surface-applied ¹³C- and ¹⁵N-labeled plant residue to trace the short-term (40 d) translocation of residue C and N into the drilosphere, and potentially the assimilation of residue C into drilosphere microbial phospholipid fatty acids (PLFAs). Total C concentration was 23%, microbial PLFA biomass was 58%, and PLFAs associated with protozoa, nematodes, Collembola and other fauna were 200-to-300% greater in the drilosphere than in nearby bulk soil. Principal components analysis of community PLFAs revealed that distributions of Gram-negative bacteria and actinomycetes and other Gram-positive bacteria were highly variable among drilosphere samples, and that drilosphere communities were distinct from bulk soil communities due to the atypical distribution of PLFA biomarkers for micro- and mesofauna. The degree of microbial PLFA ¹³C enrichment in drilosphere soils receiving ¹³C-labeled residue was highly variable, and only one PLFA, 18:1ω9c, was significantly enriched. In contrast, 11 PLFAs from diverse microbial groups where enriched in response to residue amendment in bulk soil 0–5 cm deep. Among control soils, however, a significant δ¹³C shift between drilosphere and bulk soil at the same depth (5–15 cm) revealed the importance of L. terrestris for translocating perennial ryegrass-derived C into the soil at depth, where we estimated the contribution of the recent grass C (8 years) to be at least 26% of the drilosphere soil C. We conclude that L. terrestris facilitates the translocation of plant C into soil at depth and promotes the maintenance of distinct soil microbial and faunal communities that are unlike those found in the bulk soil.     

Tillage and cover effects on soil microbial properties and fluometuron degradation

This research concerns the influence of no tillage (NT) or conventional tillage (CT) and a ryegrass (Lolium multiforum Lam.) cover crop in a cotton (Gossypium hirsutum L.) production system on soil and ryegrass microbial counts, enzyme activities, and fluometuron degradation. Fluorescein diacetate hydrolysis, aryl acylamidase, and colony-forming units (CFUs) of total bacteria and fungi, gram-negative bacteria, and fluorescent pseudomonads were determined in soil and ryegrass samples used in the degradation study. Fluometuron (14C-labelled herbicide) degradation was evaluated in the laboratory using soil and ryegrass. The CT and NT plots with a ryegrass cover crop maintained greater microbial populations in the upper 2 cm compared to their respective no-cover soils, and CT soils with ryegrass maintained greater bacterial and fungal CFUs in the 2–10 cm depth compared to the other soils The highest enzymatic activity was found in the 0–2 cm depth of soils with ryegrass compared to their respective soils without ryegrass. Ryegrass residues under NT maintained several hundred-fold greater CFUs than the respective underlying surface soils. Fluometuron degradation in soil and ryegrass residues proceeded through sequential demethylation and incorporation of residues into nonextractable components. The most rapid degradation was observed in surface (0 to 2 cm) soil from CT and NT–ryegrass plots. However, degradation occurred more rapidly in CT compared to NT soils in the 2 to 10 cm depth. Ryegrass cover crop systems, under NT or incorporated under CT, stimulated microbiological soil properties and promoted herbicide degradation in surface soils.     

Consequences of forest conversion to pasture and fallow on soil microbial biomass and activity in the eastern Amazon

The main change in soil use in Amazonia is, after slash and burn deforestation followed by annual crops, the establishment of pastures. This conversion of forest to pasture induces changes in the carbon cycle, modifies soil organic matter content and quality and affects biological activity responsible for numerous biochemical and biological processes essential to ecosystem functioning. The aim of this study was to assess changes in microbial biomass and activity in fallow and pasture soils after forest clearing. The study was performed in smallholder settlements of eastern Brazilian Amazonia. Soil samples from depths of 0–2, 2–5 and 5–10 cm were gathered in native forest, fallow land 8–10 yr old and pastures with ages of 1–2, 5–7 and 10–12 yr. Once fallow began, soil microbial biomass and its activity showed little change. In contrast, conversion to pasture modified soil microbial functioning significantly. Microbial biomass and its basal respiration decreased markedly after pasture establishment and continued to decrease with pasture age. The increase in metabolic quotient in the first years of pasture indicated a disturbance in soil functioning. Our study confirms that microbial biomass is a sensitive indicator of soil disturbance caused by land‐use change.     

The seasonal pattern of soil microbial community structure in mesic low arctic tundra

Soil microorganisms are critical to carbon and nutrient fluxes in terrestrial ecosystems. Understanding the annual pattern of soil microbial community structure and how it corresponds to soil nutrient availability and plant production is a fundamental first step towards being able to predict impacts of environmental change on ecosystem functioning. We investigated the composition, structure and nutrient stoichiometry of the soil microbial community in mesic arctic tundra on 9 sample dates in 6 months from winter to fall using phospholipid fatty acid analysis (PLFA), quantitative polymerase chain reaction (qPCR), epifluorescent microscopy and chloroform-fumigation–extraction (CFE). PLFA analysis indicates that the winter microbial community was fungal-dominated, cold-adapted and associated with high C, N and P in the soil solution and microbial biomass. The microscopy data suggest that both bacteria and fungi were active and growing in soils between −5 °C and 0 °C. A significant shift occurred in the PLFA data, qPCR patterns, microscopy and microbial biogeochemistry after the thaw period, resulting in a distinct community that persisted through our spring, summer and fall sample dates, despite large changes in plant productivity. This shift was characterised by increasing relative abundances of certain bacteria (especially Gram +ves) as well as a decline in fungal biomass, and corresponded with decreasing C, N and P in the soil solution. The summer period of low substrate availability (plant–microbe competition) was associated with microbial indicators of nutritional stress. Overall, our results indicate that tundra microbial communities are clearly differentiated according to the changes in soil nutrient status and environmental conditions that occur between winter and post-thaw, and that those changes reflect functionally important adaptations to those conditions.     

Effects of vegetational type and soil depth on soil microbial communities on the Loess Plateau of China

Soil microbial communities are very sensitive to changes in land use and are often used as indicators of soil fertility. We evaluated the microbial communities in the soils of four types of vegetation (cropland (CP), natural grassland (NG), broadleaf forest (BF) and coniferous forest (CF)) at depths of 0–10 and 10–20 cm on the Loess Plateau in China using phospholipid fatty acid (PLFA) profiling and denaturing gradient gel electrophoresis (DGGE) of DNA amplicons from polymerase chain reactions. The soil microbial communities were affected more by vegetation type than by soil depth. Total organic carbon, total nitrogen, soil-water content, pH, bulk density (BD) and C:N ratio were all significantly associated with the composition of the communities. Total PLFA, bacterial PLFA and fungal PLFA were significantly higher in the BF than the CP. The DGGE analyses showed that NG had the most diverse bacterial and fungal communities. These results confirmed the significant effect of vegetation type on soil microbial communities. BFs and natural grass were better than the CFs for the restoration of vegetation on the Loess Plateau.     

Stability of hydrolytic enzyme activity and microbial phosphorus during storage of tropical rain forest soils

Storage can markedly influence microbial and biochemical properties in soils, yet recommendations for sample storage are based on studies of temperate soils that regularly experience extended cold periods. We assessed the influence of storage conditions on microbial phosphorus and the activity of four hydrolytic enzymes (phosphomonoesterase, phosphodiesterase, β-glucosidase, and N-acetyl-β-d-glucosaminidase) in three lowland tropical forest soils from the Republic of Panama that experience a constant warm temperature. The soils spanned a strong rainfall gradient and contained contrasting physical and chemical properties (pH 3.6-5.9; total carbon 26-50 g C kg⁻¹; clay 33-62%; total phosphorus 0.30-0.60 g P kg⁻¹). Storage treatments were: (i) room temperature (22 °C in the dark), (ii) refrigerated (4 °C in the dark), (iii) air-dried (10 d, 22 °C), and (iv) frozen (−35 °C). There were significant changes in enzyme activities and microbial phosphorus during refrigerated and room temperature storage, although changes were relatively small during the first two weeks. An initial marked decline in enzyme activities for one soil analyzed within 2 h of sampling was attributed to a flush of activity caused by sampling and soil preparation (sieving, etc.). For longer-term storage (>2 weeks), ambient laboratory temperature appeared preferable to freezing and cold storage, because one month of storage caused a marked decline in enzyme activities and microbial phosphorus in one soil. Freezing preserved the activities of some enzymes in some soils at rates comparable to cold or room temperature storage, but caused a marked decline in microbial phosphorus in two soils. Air-drying caused a marked decline in microbial phosphorus and the activity of all enzymes. We therefore conclude that enzyme assays and microbial phosphorus should be determined in tropical forest soils after no more than two weeks storage in the dark at ambient laboratory temperature.     

Soil enzymatic activities and available P and Zn as affected by tillage practices,canola (Brassica napus L.) cultivars and planting dates

Due to high sensitivity and rapid response, soil biological properties including microbial enzymatic activities are appropriate indicators of soil quality, under different agricultural systems. Hence, a two-year field experiment was performed in 2002 and 2003 hypothesizing that soil microbial activities and P and Zn availability differ under different management practices. The objective was to evaluate the effects of different tillage (T) practices, canola (Brassica napus L.) cultivars (V's) and planting dates (PD's) on the soil enzymatic activities of alkaline and acid phosphatase and dehydrogenase and available P and Zn. Using a split plot design, different T practices (no (NT), minimum (MT) and conventional (CT)) and the combination of different V's (Hyola 401 and PF) and PD's (8th (PD1), 23rd September (PD2) and 7th October (PD3)) were assigned to the main and subplots, respectively. Soil enzymatic activities and P and Zn were measured. The actions and interactions of T, and PD significantly affected the activity of alkaline and acid phosphatase. Although, dehydrogenase activity at 0–10 cm was affected by T, V and PD and the interaction of T and PD, only T and the interaction of T and PD influenced the activity of this enzyme at 10–20 cm. Compared with other tillage practices, NT significantly increased enzymatic activities. The enzymatic activity at the 0–10 cm depth was in the order of PD1 > PD2 > PD3. However, at the 10–20 cm depth MT had a significant effect on dehydrogenase activity. NT reduced soil available P and Zn. NT can significantly influence soil biological properties and hence canola growth, resulting in a sustainable agricultural system.     

Structural diversity and enzyme activity of volcanic soils at different stages of development and response to experimental disturbance

We investigated the phospholipid fatty acid (PLFA) diversity and enzyme activities in soils from the volcano, Mt. Etna (Sicily). The soils were at sites which have been developing for different periods of time and have formed in volcanic lava of differing ages that have been supplemented with volcanic ejecta from subsequent eruptions. However, the plant communities indicated a marked successional difference between the sites and we have used this as a proxy for developmental stage. We have compared the structural and functional properties of the microbial communities in soils from the two sites and tested experimentally the hypothesis that the more diverse community was more resistant and resilient to disturbance. The experimental disturbance imposed was heating (60 °C for 48 h) and the recovery of enzyme activities (β-glucosidase, acid phosphatase and arylsulfatase) and structural properties (PLFA profiles) were then followed over six months. The microbial community in the soil from the older site was more structurally diverse and had a larger total PLFA concentration before disturbance than that of the soil from the younger site. The older soil community was not more resistant and resilient following an environmental disturbance as the younger soil community was equally or more resistant and resilient for all parameters. Changes in enzyme activities following disturbance were almost entirely attributable to changes in biomass (total PLFA).     

Soil sustainability indicators following conservation tillage practices under subtropical maize and bean crops

Conservation management systems such as no tillage may enhance sequestration of soil C. The soil properties that contribute to soil C storage under such systems are still largely unknown, especially in subtropical agroecosystems. We investigated the influence of tillage [mouldboard plough (MP) and no tillage (NT)] on soil organic C, microbial biomass and activity, structural stability and mycorrhizal status of a field cultivated with maize (Zea mays L.) or bean (Phaseolus vulgaris L.) on a Vertisol in Northern Tamaulipas, Mexico. Crop type, tillage system and soil depth had a significant effect on soil organic C, aggregate stability and bulk density. Soil organic C, microbial biomass C and N and dehydrogenase and phosphatase activities were greater with NT than with MP, particularly under bean cultivation. In the 0–5 cm layer, microbial biomass C and N were, on average, about 87 and 51% greater in the soils cultivated with bean and maize, respectively, under NT than under MP. Higher levels of mycorrhizal propagules, glomalin related soil protein (GRSP) and stable aggregates were produced under NT than under MP in both crops. The no-tillage system can be considered an effective management practice for carrying out sustainable agriculture under subtropical conditions, due to its improvement of soil physical and biochemical quality and soil C sequestration.     

Impact of the antibiotic sulfadiazine and pig manure on the microbial community structure in agricultural soils

Large amounts of veterinary antibiotics enter soil via manure of treated animals. The effects on soil microbial community structure are not well investigated. In particular, the impact of antibiotics in the presence of manure is poorly understood. In this study, two agricultural soils, a sandy Cambisol (KS) and a loamy Luvisol (ML), were spiked with manure and sulfadiazine (SDZ; 0, 10 and 100 μg g^?1) and incubated for 1, 4, 32 and 61 days. Untreated controls received only water. The microbial community structure was characterised by investigating phospholipid fatty acids (PLFA) and using PCR–denaturing gradient gel electrophoresis (DGGE) of 16S rDNA. The total concentration of PLFA increased with addition of manure and was reduced by both SDZ concentrations at incubation times >4 days. The SDZ addition decreased the bacteria:fungi ratio. The largest stress level, measured as ratio of PLFA (cyc17:0 + cyc19:0)/(16:1ω7c + 18:1ω7c), was found for the controls, followed by the manure treatments and the SDZ treatments. A discriminant analysis of the PLFA clearly separated treatments and incubation times. Both soils differed in total PLFA concentrations and Gram^?:Gram⁺ ratios, but showed similar changes in PLFA pattern upon soil treatment. Effects of manure and SDZ on the bacterial community structure were also revealed by DGGE analysis. Effects on pseudomonads and β-proteobacteria were less pronounced. While community structure remained altered even after two months, the extractable concentrations of SDZ decreased exponentially and the remaining solution concentrations after 32 days were ≤27% of the spiking concentration. Our results demonstrate that a single addition of SDZ has prolonged effects on the microbial community structure in soils.     

Long-term no-till management affects microbial biomass but not community composition in Canadian prairie agroecosytems

No-till (NT) management greatly reduces soil physical disturbance and can result in a stratification of nutrients and organic matter in the soil profile due to the retention of crop residues on the soil surface potentially affecting the dynamics of microbial interactions in the soil. Microbial abundance and diversity can be used to assess the relative impact of management on the long-term sustainability of cropping systems. The objective of this study was to assess the impact of long-term NT vs. conventional tillage (CT) management on soil microbial community structure at four different sites on the Canadian prairies using phospholipid fatty acid analysis (PLFA) and DNA fingerprinting. Analysis of 16S and 18S rDNA using denaturing gradient gel electrophoresis revealed high inherent variability within bacterial and fungal community fingerprints among replicate field plots. Differences in bacterial and fungal phylogeny were related to depth in the soil profile but not to tillage management. Abundance of individual PLFA biomarkers were 7 to 86% greater in NT surface soils (0- to 5-cm depth), except at the Ellerslie site in 2005 where biomass was greater in CT. Responses at the 5- to 10-cm and 10- to 15-cm depths were more varied, in some cases with greater biomass in CT than NT soils. Ordination analysis of PLFA profiles showed clear community separation with depth but not tillage. Physiological stress biomarkers were correlated with simple measures of nutrient concentration and indicated that resource availability was likely the main factor determining community structure. It was concluded that tillage disturbance was not an overriding factor in determining microbial community composition in the long-term NT and CT soils studied. Further study of the interaction of cropping frequency with tillage management is needed to understand the effects of tillage disturbance on microbial turnover of plant derived residues.