Soil microbiological properties and its stratification ratios for soil quality assessment under different cover crop management systems in a semiarid vineyard

In vineyards in Spain, tillage and semiarid Mediterranean climatic conditions accelerate organic matter loss from the soil. Cover crops are a conservation management practice that can provoke changes in soil quality which requires evaluation. Stratification ratios of soil properties such as soil organic C and labile C fractions have been proposed for the assessment of soil quality under different soil management systems. Our objective was to study the effect of different cover crop management on various soil parameters and their stratification ratios. We evaluated three different soil managements in a Typic Haploxerept from NE Spain: conventional tillage (CT); 5‐y continuous cover crop of resident vegetation (RV); and 4‐y continuous cover crop of Festuca longifolia Thuill., followed by 1‐y Bromus catharticus L. after resowing (BV). We monitored soil organic C, particulate organic C, water soluble C, potentially mineralizable N, microbial biomass C, β‐glucosidase and urease enzymatic activities, and water stable aggregates at 0–2.5, 2.5–5, 5–15, 15–25, and 25–45 cm soil depths. We calculated soil depth stratification ratios of those soil properties. Resident cover crop increased microbiological properties, labile C fractions, and aggregation with respect to conventional tillage at 0–2.5 and 2.5–5 cm soil depths. However, for Bromus cover crop the same soil properties were lower than for the resident cover crop at 0–2.5 cm depth. Stratification ratios of β‐glucosidase and urease enzymatic activities, and particulate organic C showed a higher sensitivity than other soil properties; therefore, they would be the best indicators for soil quality assessment in semiarid Mediterranean vineyards.     

Organic matter dynamics in a temperate forest as influenced by soil frost

In the future, climate models predict an increase in global surface temperature and during winter a changing of precipitation from less snowfall to more raining. Without protective snow cover, freezing can be more intensive and can enter noticeably deeper into the soil with effects on C cycling and soil organic matter (SOM) dynamics. We removed the natural snow cover in a Norway spruce forest in the Fichtelgebirge Mts. during winter from late December 2005 until middle of February 2006 on three replicate plots. Hence, we induced soil frost to 15 cm depth (at a depth of 5 cm below surface up to –5°C) from January to April 2006, while the snow‐covered control plots never reached temperatures < 0°C. Quantity and quality of SOM was followed by total organic C and biomarker analysis. While soil frost did not influence total organic‐C and lignin concentrations, the decomposition of vanillyl monomers (Ac/Ad)_V and the microbial‐sugar concentrations decreased at the end of the frost period, these results confirm reduced SOM mineralization under frost. Soil microbial biomass was not affected by the frost event or recovered more quickly than the accumulation of microbial residues such as microbial sugars directly after the experiment. However, in the subsequent autumn, soil microbial biomass was significantly higher at the snow‐removal (SR) treatments compared to the control despite lower CO₂ respiration. In addition, the water‐stress indicator (PLFA [cy17:0 + cy19:0] / [16:1ω7c + 18:1ω7c]) increased. These results suggest that soil microbial respiration and therefore the activity was not closely related to soil microbial biomass but more strongly controlled by substrate availability and quality. The PLFA pattern indicates that fungi are more susceptible to soil frost than bacteria.     

Effects of cropping systems on soil organic matter in a pair of conventional and biodynamic mixed cropping farms in Canterbury, New Zealand

Effects of cropping systems on soil organic matter (SOM) in a pair of conventional and biodynamic mixed cropping farms were investigated. Soil samples (0–75 and 75–150-mm depths) were analysed for total carbon (TC), total nitrogen (TN), microbial biomass C (BC) and microbial biomass N (BN), and sequentially extracted for labile and stable SOM using cold water, hot water, acid mixtures and alkalis. In the biodynamic farm, TC and TN decreased with increasing period of cropping but the reverse occurred under pastures. These were not shown in soils from the conventional farm, probably due to N fertilizer additions. Under pastures, increases in SOM were attributed to greater biological N₂ fixation and the return of plant residues and excreta from grazing animals. Overall, sensitive SOM quality indicators found for labile SOM were BN, BN:TN and HC:TC, and for stable SOM were HCl/HFC, HCl/HFC:TC, humin C, humin N, humin C:TC and humin N:TN. The BN and BN:TN were better indicators than BC and BC:TC. The humin fraction was strongly related to both labile and stable SOM fractions suggesting that humin contained non-extractable strongly complexed SOM components with mineral matter and also non-extractable plant and microbial residual components. Received: 10 October 1996     

Response of labile organic C and N pools to plastic film removal from semiarid farmland soil

To examine the effects of plastic film removal on grain yield and soil organic matter (SOM), a spring maize (Zea may L.) field experiment was conducted for 5 yr at Changwu Agricultural and Ecological Experimental Station of Northwest China. Compared with traditional plastic film mulching during entire growing stages (FM), plastic film removal at the silking stage (RM) resulted in a 6.3% higher average maize yield. Under the RM treatment, soil organic carbon and total nitrogen significantly increased after the 5‐yr cultivation in the 0‐ to 20‐cm layer. Significant increases in extractable organic C (EOC), KMnO₄‐oxidizable C (KMnO₄‐C) and C management index (CMI) in the 0‐ to 20‐cm layer, and light fraction organic C and EOC in the 20‐ to 40‐cm layer were observed in response to plastic film removal after the 1‐yr treatment; the responses were more significant after 5 yr. Under the RM treatment, significant increases in microbial biomass C, light fraction organic N, extractable organic N, KMnO₄‐C and CMI were also observed after five years in the 20‐ to 40‐cm layer. Moreover, KMnO₄‐C and EOC were much more sensitive than other labile SOM fractions to the application of RM, even after only 1 yr of cultivation. Therefore, compared with mulching for the whole growing season, plastic film removal at the maize silking stage is an effective option for increasing yields and enhancing SOM concentration and soil sustainability in the regions with semiarid monsoon climates that have sufficient rainfall during maize reproductive stages.     

Assessing management impacts on soil organic matter quality in subtropical Australian forests using physical and chemical fractionation as well as C NMR spectroscopy

Successful soil organic matter (SOM) quality assessment is needed to improve our ability to manage forest soils sustainably. Our objective was to use a multivariate data set to determine whether the land use conversion from native forest (NF) to hoop pine plantation and the following rotation and site preparation practices had altered SOM quality at three adjacent sites of NF, first (1R) and second rotation (2R, including tree planting row (2R-T) and windrow of harvest residues (2R-W)) of hoop pine plantations in southeast Queensland, Australia. Cross-polarization magic angle spinning ¹³C nuclear magnetic resonance (CPMAS ¹³C NMR) spectroscopy and sequential hot water and acid hydrolysis were conducted on SOM fractions separated by wet-sieving and density fractionation procedures to characterize SOM quantitative and qualitative relevant parameters, including carbon (C) functional groups, C and nitrogen (N) contents, C/N ratios, and C and N recalcitrant indices. Analysis of variance (ANOVA) and principal component analysis (PCA) of these multivariate parameters together indicated a complicated interaction between physical protection and biochemical recalcitrance, making the land use and management induced changes of SOM quality more complex. Knowledge of PCA based on the refined set of 41 SOM quantitative and qualitative parameters identified that principal component 1 (PC1), which explained 55.7% of the total variance, was most responsible for the management induced changes in soil processes. This was reflected by the dynamics of SOM regarding the aspects of total stock, soil basal and substrate induced respirations, gross and net N mineralization and nitrification, and microbial biomass, microbial diversity of C utilization patterns. Further, the macroaggregates (F_{250-2000 μm}) and the C/N ratio of acid extracts of SOM physical fractions, which represented the most informative and unique variables loading on PC1, might be the most promising physical and chemical measures for SOM quality assessment of land use and management impacts in subtropical Australian forests.     

Degradation and restoration of sandy soils under different agricultural land uses in northeast Thailand: a review

Conversion of natural forest to agricultural land use has significantly lowered the soil organic matter (SOM) content in sandy soils of northeast Thailand. This paper reviews the findings of comparative studies on contents of SOM pools (labile, i.e. microbial biomass and particulate organic matter—POM and stable, i.e. humic substance) and related soil aggregate formation, in natural forest plots and cultivated fields (monocrops of cassava, sugarcane and rice) in sites representative of northeast Thailand from the viewpoints of terrain (i.e. undulating), soils (sandy) and land use and discusses the restoration of SOM and fertility (nitrogen) in these degraded soils. Monocultural agriculture brings about the degradation of all SOM pools and associated soil aggregation as compared to the forest system because of decreased organic inputs and more frequent soil disturbance. The build‐up of SOM was achieved through the continuous recycling of organic residues produced within the system. Low‐quality residues contributed the largest SOM build‐up in whole and fractionated SOM pools, including POM and humic substance. However, to restore N fertility, high quality residues, (i.e. with low C/N ratios, lignin and polyphenols) were also needed. Timing of N release to meet crop demand was achieved by employing a mixture of high and low quality residues. Selection of appropriate residues for N sources was affected by environmental factors, notably soil moisture regimes, which differed in upland field and lowland paddy subsystems. Copyright © 2007 John Wiley & Sons, Ltd.     

Stability of soil organic matter in two northeastern German fen soils: the influence of site and soil development

Purpose

Peatland soils play an important role in the global carbon (C) cycle due to their high organic carbon content. Lowering of the water table e.g. for agricultural use accelerates aerobic secondary peat decomposition and processes of earthification. Peatlands change from C sinks to C sources. We characterized soil organic matter (SOM) with special attention to human impact through drainage. Our aim was to gain knowledge of SOM quality and soil-forming processes in drained fen soils in northeastern Germany.

Materials and methods

Through techniques of representative landscape analysis, we identified two typical and representative sampling sites in different stages of land use, representing the most important hydrogenetic mire types in northeastern Germany. We adapted chemical fractionation procedures which include hot water extraction (C_hwe and N_hwe) for determination of the labile fraction. Furthermore, a stepwise acid hydrolysis procedure was performed to measure the chemical recalcitrant part of SOM as it is more resistant to biodegradability.

Results and discussion

Total organic C decreased with increasing human impact and intensity of drainage. Conversely, C_hwe and N_hwe concentrations increased with increasing drainage and human impact. In contrast, the more recalcitrant fractions increased with soil depth.

Conclusions

Generally, there is a lack of existing data about SOM quality and the factors controlling its stability and decomposition in fen soils. For northeastern German fen soils, the data are even more inadequate. Influence of drainage seems to overlap natural influences of site on SOM quality. The used extraction scheme was suitable for the chemical fractionation of SOM into labile and more recalcitrant parts.     

The Humus Content and Soil Biological Properties as a Function of Organic and Mineral Fertilization

There is a growing recognition for the need to develop sensitive indicators of soil quality that reflect the effects of land management on soil and assist land users in promoting sustainability of agro-ecosystems. Three soil enzymes (dehydrogenase, phosphatase and invertase) microbial biomass as biological variables and soil organic matter content (SOM) were investigated relative to fertilization and soil fertility (estimated by crop yield) at a long-term fertilization trial (Keszthely, Hungary). 0-34.7-69.4-104.1t farmyard manure (FYM) ha m 1 5 yr m 1 and the corresponding amount of mineral fertilizers (NPK) were applied in two different crop rotation systems. There were four straw and/or stalk incorporating treatments in the second crop rotation 'B'. Enzyme activities, microbial biomass and the amount of SOM were generally higher in the fertilized soils than in the unfertilized soils. The type of amendments (mineral, FYM or mixed) had significant effects only on the amount of SOM. The correlations among the biological variables and the crop yield were generally low (r < 0.250. The differences in field management resulted only in the invertase activity.     

Carbon isotopes of water‐extractable organic carbon in a depth profile of forest soil imply a dynamic relationship with soil carbon

Although considerable research has been conducted on the importance of recent litter compared with older soil organic matter as sources of dissolved organic carbon (DOC) in forest soils, a more thorough evaluation of this mechanism is necessary. We studied water‐extractable organic carbon (WEOC) in a soil profile under a cool‐temperate beech forest by analysing the isotopic composition (¹³C and ¹⁴C) of WEOC and its fractions after separation on a DAX‐8 resin. With depth, WEOC became more enriched in ¹³C, which reflects the increasing proportion of the hydrophilic, isotopically heavier fraction. The ¹⁴C content in WEOC and its fractions decreased with depth, paralleling the ¹⁴C trend in soil organic matter (SOM). These results indicate a dynamic equilibrium of WEOC and soil organic carbon. The dominant process maintaining the WEOC pool in the mineral soil appears to be the microbial release of water‐soluble compounds from the SOM, which alters in time‐scales of decades to centuries.     

Microbial contribution to SOM quantity and quality in density fractions of temperate arable soils

The formation of soil organic matter (SOM) very much depends on microbial activity. Even more, latest studies identified microbial necromass itself being a significant source of SOM and found microbial products to initiate and enhance the formation of long-term stabilized SOM. The objectives of this study were to investigate the microbial contribution to SOM in pools of different stability and its impact on SOM quality. Hence, four arable soils of widely differing properties were density-fractionated into free and occluded particulate organic matter (fPOM, oPOM < 1.6 g cm⁻³ and oPOM < 2.0 g cm⁻³) and mineral associated organic matter (MOM > 2.0 g cm⁻³) by using sodium polytungstate. These fractions were characterized by in-source pyrolysis-field ionization mass spectrometry (Py-FIMS). Main SOM compound classes of the fractions were determined and further SOM properties were derived (polydispersity, thermostability). The contribution of microbial derived input to arable soil OM was estimated from the hexose to pentose ratio of the carbohydrates and the ratio of C₄–C₂₆ to C₂₆–C₃₆ fatty acids. Additionally, selected samples were investigated by scanning electron microscopy (SEM) for visualizing structures as indicators for the origin of OM. Results showed that, although the samples differed significantly regarding soil properties, SOM composition was comparable and almost 50% of identifiable SOM compounds of all soils types and all density fractions were assigned to phenols, lignin monomers and alkylaromatics. Most distinguishing were the high contents of carbohydrates for the MOM and of lipids for the POM fractions. Qualitative features such as polydispersity or thermostability were not in general assignable to specific compounds, density fractions or different mean residence times. Only the microbial derived part of the soil carbohydrates could be shown to be correlated with high SOM thermostability (r² = 0.63**, n = 39). Microbial derived carbohydrates and fatty acids were both enriched in the MOM, showing that the relative contribution of microbial versus plant-derived input to arable SOM increased with density and therefore especially increased MOM thermostability. Nevertheless, the general microbial contribution to arable SOM is suggested to be high for all density fractions; a mean proportion of about 1:1 was estimated for carbohydrates. Despite biomolecules released from living microorganisms, SEM revealed that microbial mass (biomass and necromass) is a considerable source for stable SOM which is also increasing with density.     

Long‐term effects of tillage,nutrient application and crop rotation on soil organic matter quality assessed by NMR spectroscopy

Crop and land management practices affect both the quality and quantity of soil organic matter (SOM) and hence are driving forces for soil organic carbon (SOC) sequestration. The objective of this study was to assess the long‐term effects of tillage, fertilizer application and crop rotation on SOC in an agricultural area of southern Norway, where a soil fertility and crop rotation experiment was initiated in 1953 and a second experiment on tillage practices was initiated in 1983. The first experiment comprised 6‐yr crop rotations with cereals only and 2‐yr cereal and 4‐yr grass rotations with recommended (base) and more than the recommended (above base) fertilizer application rates; the second experiment dealt with autumn‐ploughed (conventional‐till) plots and direct‐drilled plots (no‐till). Soil samples at 0–10 and 10–30 cm depths were collected in autumn 2009 and analysed for their C and N contents. The quality of SOM in the top layer was determined by ¹³C solid‐state NMR spectroscopy. The SOC stock did not differ significantly because of rotation or fertilizer application types, even after 56 yr. However, the no‐till system showed a significantly higher SOC stock than the conventional‐till system at the 0–10 cm depth after the 26 yr of experiment, but it was not significantly different at the 10–30 cm depth. In terms of quality, SOM was found to differ by tillage type, rate of fertilizer application and crop rotation. The no‐till system showed an abundance of O‐alkyl C, while conventional‐till system indicated an apparently indirect enrichment in alkyl C, suggesting a more advanced stage of SOM decomposition. The long‐term quantitative and qualitative effects on SOM suggest that adopting a no‐tillage system and including grass in crop rotation and farmyard manure in fertilizer application may contribute to preserve soil fertility and mitigate climate change.     

Organic matter in density fractions of water-stable aggregates in silty soils: Effect of land use

The location of soil organic matter (SOM) within the soil matrix is considered a major factor determining its turnover, but quantitative information about the effects of land cover and land use on the distribution of SOM at the soil aggregate level is rare. We analyzed the effect of land cover/land use (spruce forest, grassland, wheat and maize) on the distribution of free particulate organic matter (POM) with a density <1.6 g cm⁻³ (free POM_<1.6), occluded particulate organic matter with densities <1.6 g cm⁻³ (occluded POM_<1.6) and 1.6-2.0 g cm⁻³ (occluded POM_1.6-2.0) and mineral-associated SOM (>2.0 g cm⁻³) in size classes of slaking-resistant aggregates (53-250, 250-1000, 1000-2000, >2000 μm) and in the sieve fraction <53 μm from silty soils by applying a combined aggregate size and density fractionation procedure. We also determined the turnover time of soil organic carbon (SOC) fractions at the aggregate level in the soil of the maize site using the ¹³C/¹²C isotope ratio. SOM contents were higher in the grassland soil aggregates than in those of the arable soils mainly because of greater contents of mineral-associated SOM. The contribution of occluded POM to total SOC in the A horizon aggregates was greater in the spruce soil (23-44%) than in the grassland (11%) and arable soils (19%). The mass and carbon content of both the free and occluded POM fractions were greater in the forest soil than in the grassland and arable soils. In all soils, the C/N ratios of soil fractions within each aggregate size class decreased in the following order: free POM_<1.6>occluded POM_<1.6-2.0>mineral-associated SOM. The mean age of SOC associated with the <53 μm mineral fraction of water-stable aggregates in the Ap horizon of the maize site varied between 63 and 69 yr in aggregates >250 μm, 76 yr in the 53-250 μm aggregate class, and 102 yr in the sieve fraction <53 μm. The mean age of SOC in the occluded POM increased with decreasing aggregate size from 20 to 30 yr in aggregates >1000 μm to 66 yr in aggregates <53 μm. Free POM had the most rapid rates of C-turnover, with residence times ranging from 10 yr in the fraction >2000 μm to 42 yr in the fraction 53-250 μm. Results indicated that SOM in slaking-resistant aggregates was not a homogeneous pool, but consisted of size/density fractions exhibiting different composition and stability. The properties of these fractions were influenced by the aggregate size. Land cover/land use were important factors controlling the amount and composition of SOM fractions at the aggregate level.     

Soil microbial biomass and activity: the effect of site characteristics in humid temperate forest ecosystems

Microbial biomass, respiratory activity, and in‐situ substrate decomposition were studied in soils from humid temperate forest ecosystems in SW Germany. The sites cover a wide range of abiotic soil and climatic properties. Microbial biomass and respiration were related to both soil dry mass in individual horizons and to the soil volume in the top 25 cm. Soil microbial properties covered the following ranges: soil microbial biomass: 20 µg C g^–1–8.3 mg C g^–1 and 14–249 g C m^–2, respectively; microbial C–to–total organic C ratio: 0.1%–3.6%; soil respiration: 109–963 mg CO₂‐C m^–2 h^–1; metabolic quotient (qCO₂): 1.4–14.7 mg C (g C_mic)^–1 h^–1; daily in‐situ substrate decomposition rate: 0.17%–2.3%. The main abiotic properties affecting concentrations of microbial biomass differed between forest‐floor/organic horizons and mineral horizons. Whereas microbial biomass decreased with increasing soil moisture and altitude in the forest‐floor/organic horizons, it increased with increasing N_tot content and pH value in the mineral horizons. Quantities of microbial biomass in forest soils appear to be mainly controlled by the quality of the soil organic matter (SOM), i.e., by its C : N ratio, the quantity of N_tot, the soil pH, and also showed an optimum relationship with increasing soil moisture conditions. The ratio of C_mic to C_org was a good indicator of SOM quality. The quality of the SOM (C : N ratio) and soil pH appear to be crucial for the incorporation of C into microbial tissue. The data and functional relations between microbial and abiotic variables from this study provide the basis for a valuation scheme for the function of soils to serve as a habitat for microorganisms.     

Is thermal oxidation at different temperatures suitable to isolate soil organic carbon fractions with different turnover?

Findings of previous studies suggest that there are relations between thermal stability of soil organic matter (SOM), organo‐mineral associations, and stability of SOM against microbial decay. We aimed to test whether thermal oxidation at various temperatures (200°C, 225°C, 275°C, 300°C, 400°C, or 500°C) is capable of isolating SOM fractions with increasing stability against microbial degradation. The investigation was carried out on soils (Phaeozem and Luvisol) under different land‐use regimes (field, grassland, forest). The stability of the obtained soil organic carbon (SOC) fractions was determined using the natural‐¹³C approach for continuously maize‐cropped soils and radiocarbon dating. In the Luvisol, thermal oxidation with increasing temperatures did not yield residual SOC fractions of increasing microbial stability. Even the SOC fraction resistant to thermal oxidation at 300°C contained considerable amounts of young, maize‐derived C. In the Phaeozem, the mean ¹⁴C age increased considerably (from 3473 y BP in the mineral‐associated SOC fraction to 9116 y BP in the residual SOC fraction after thermal oxidation at 300°C). An increasing proportion of fossil C (calculated based on ¹⁴C data) in residual SOC fractions after thermal oxidation with increasing temperatures indicated that this was mainly due to the relative accumulation of thermally stable fossil C. We conclude that thermal oxidation with increasing temperature was not generally suitable to isolate mineral‐associated SOC fractions of increasing microbial stability.     

Humification-mineralization pyrolytic indices and carbon fractions of soil under organic and conventional management in central Italy

The aim of this study was to evaluate chemical changes in soil organic matter (SOM) in organically and conventionally managed fields, using pyrolytic indices and the extraction of different carbon fractions. Pyrolysis-gas chromatography (Py-GC) was used to study structural changes in SOM, whereas the different soil extractions gave a fractionation of C forms. Organic management increased both humic and labile C forms (microbial biomass C and water soluble organic C). A significant positive relationship was found between the living SOM fraction, expressed as microbial biomass/total organic C ratio (MBC/TOC) and humification rate. A negative relationship was found between the pyrrole to phenol ratio (O/Y) and total extractable C (TEC).An opposite trend has been observed for the second pyrolytic index (N/O), which represents the mineralization of fresh organic matter. Mineralization was higher in organically managed soil, probably because of consistent input of fresh material to the organic field. Carbon fraction pools and pyrolytic indices provided complementary indications of SOM quality under organic and conventional management.     

Seasonal dynamics of leaf- and root-derived C in arctic tundra mesocosms

We investigated contributions of leaf litter, root litter and root-derived organic material to tundra soil carbon (C) storage and transformations. ¹⁴C-labeled materials were incubated for 32 weeks in moist tussock tundra soil cores under controlled climate conditions in growth chambers, which simulated arctic fall, winter, spring and summer temperatures and photoperiods. In addition, we tested whether the presence of living plants altered litter and soil organic matter (SOM) decomposition by planting shoots of the sedge Eriophorum vaginatum in half of the cores. Our results suggest that root litter accounted for the greatest C input and storage in these tundra soils, while leaf litter was rapidly decomposed and much of the C lost to respiration. We observed transformations of ¹⁴C between fractions even when total C appeared unchanged, allowing us to elucidate sources and sinks of C used by soil microorganisms. Initial sources of C included both water soluble (WS) and acid-soluble (AS) fractions, primarily comprised of carbohydrates and cellulose, respectively. The acid-insoluble (AIS) fraction appeared to be a sink for C when conditions were favorable for plant growth. However, decreases in ¹⁴C activity from the AIS fraction between the fall and spring harvests in all treatments indicated that microorganisms consumed recalcitrant C compounds when soil temperatures were below 0 °C. In planted leaf litter cores and in both planted and unplanted SOM cores, the greatest amounts of ¹⁴C at the end of the experiment were found in the AIS fraction, suggesting a high rate of humification or accumulation of decay-resistant plant tissues. In unplanted leaf litter cores and planted and unplanted root litter cores most of the ¹⁴C remaining at the end of the experiment was in the AS fraction suggesting less extensive humification of leaf and root detritus. Overall, the presence of living plants stimulated decomposition of leaf litter by creating favorable conditions for microbial activity at the soil surface. In contrast, plants appeared to inhibit decomposition of root litter and SOM, perhaps because of microbial preferences for newer, more labile inputs from live roots.     

How relevant is recalcitrance for the stabilization of organic matter in soils?

Traditionally, the selective preservation of certain recalcitrant organic compounds and the formation of recalcitrant humic substances have been regarded as an important mechanism for soil organic matter (SOM) stabilization. Based on a critical overview of available methods and on results from a cooperative research program, this paper evaluates how relevant recalcitrance is for the long‐term stabilization of SOM or its fractions. Methodologically, recalcitrance is difficult to assess, since the persistence of certain SOM fractions or specific compounds may also be caused by other stabilization mechanisms, such as physical protection or chemical interactions with mineral surfaces. If only free particulate SOM obtained from density fractionation is considered, it rarely reaches ages exceeding 50 y. Older light particles have often been identified as charred plant residues or as fossil C. The degradability of the readily bioavailable dissolved or water‐extractable OM fraction is often negatively correlated with its content in aromatic compounds, which therefore has been associated with recalcitrance. But in subsoils, dissolved organic matter aromaticity and biodegradability both are very low, indicating that other factors or compounds limit its degradation. Among the investigated specific compounds, lignin, lipids, and their derivatives have mean turnover times faster or similar as that of bulk SOM. Only a small fraction of the lignin inputs seems to persist in soils and is mainly found in the fine textural size fraction (<20 µm), indicating physico‐chemical stabilization. Compound‐specific analysis of ¹³C : ¹²C ratios of SOM pyrolysis products in soils with C3‐C4 crop changes revealed no compounds with mean residence times of > 40–50 y, unless fossil C was present in substantial amounts, as at a site exposed to lignite inputs in the past. Here, turnover of pyrolysis products seemed to be much longer, even for those attributed to carbohydrates or proteins. Apparently, fossil C from lignite coal is also utilized by soil organisms, which is further evidenced by low ¹⁴C concentrations in microbial phospholipid fatty acids from this site. Also, black C from charred plant materials was susceptible to microbial degradation in a short‐term (60 d) and a long‐term (2 y) incubation experiment. This degradation was enhanced, when glucose was supplied as an easily available microbial substrate. Similarly, SOM mineralization in many soils generally increased after addition of carbohydrates, amino acids, or simple organic acids, thus indicating that stability may also be caused by substrate limitations. It is concluded that the presented results do not provide much evidence that the selective preservation of recalcitrant primary biogenic compounds is a major SOM‐stabilization mechanism. Old SOM fractions with slow turnover rates were generally only found in association with soil minerals. The only not mineral‐associated SOM components that may be persistent in soils appear to be black and fossil C.     

Linking diagnostic features to soil microbial biomass and respiration in agricultural grassland soil: a large‐scale study in Ireland

The functional potential of soil ecosystems can be predicted from the activity and abundance of the microbial community in relation to key soil properties. When describing microbial community dynamics, soil physicochemical properties have traditionally been used. The extent of correlations between properties, however, differs between studies, especially across larger spatial scales. In this research we analysed soil microbial biomass and substrate‐induced respiration of 156 samples from Irish grasslands. In addition to the standard physicochemical, soil type and land management variables, soil diagnostic properties were included to identify if these important soil–landscape genesis classes affected microbial biomass and respiration dynamics in Irish soil. Apart from physicochemical properties, soil drainage class was identified as having an important effect on microbial properties. In particular, biomass‐specific basal (qCO₂) and substrate‐induced respiration (SIR:CFE) were explained best by the soil drainage. Poorly drained soil had smaller values of these respiration measures than well‐drained soil. We concluded that this resulted from different groups within the microbial community that could use readily available carbon sources, which suggests a change in microbial community dynamics associated with soil texture and periods of water stress. Overall, our results indicate that soil quality assessments should include both physicochemical properties and diagnostic classes, to provide a better understanding of the behaviour of soil microbial communities.

Highlights

• Assessing the effect of soil diagnostic features and properties on microbial biomass and respiration
• A soil biological survey from 156 grassland sites in Ireland
• Soil drainage class has an important effect on microbial properties
• Soil quality assessments should include both physicochemical properties and diagnostic classes

     

Chemical and microbial activation energies of soil organic matter decomposition

Present concepts emphasize that substrate quality exerts an important control over substrate decomposability and temperature sensitivity of heterotrophic soil respiration (Rh). In this context, soil organic matter (SOM) quality is defined by its molecular and structural complexity and determines the ease by which substrate is oxidized. However, temperature not only affects SOM oxidation rates but also equally the physiology of soil microorganisms, making it difficult to use respiration rates as indicative for the quality inherent to a substrate. One way to distinguish these two would be to measure organic matter oxidation by controlled combustion and to compare the temperature sensitivity of this chemical process to that of enzyme-catalyzed microbial respiration. We analyzed reaction rates, thermal stability indices, and activation energies (Ea) during (i) microbial respiration (Ea_Rh) and (ii) controlled combustion by differential scanning calorimetry (DSC) (Ea_DSC) of the same set of mineral and organic soils. A high thermal stability coincided with small heterotrophic respiration rates, indicating that thermal stability may be useful as a proxy for biological degradability. Under ambient conditions, enzymes greatly reduced Ea on average from 136 (Ea_DSC) to 87 (Ea_Rh) kJ mol^?1, thereby increasing CO₂ release by a factor of 1.5 * 10⁷ relative to the noncatalyzed chemical reaction. However, temperature dependency of chemical and microbial oxidation was not correlated, suggesting that they are determined by different sample properties. A high temperature sensitivity of microbial respiration is linked to parameters independent of chemical oxidizability, in our case, organic matter C/N ratio and soil pH. These factors are important controls for microbial, but not for chemical, oxidation.     

Microbial community composition shapes enzyme patterns in topsoil and subsoil horizons along a latitudinal transect in Western Siberia

Soil horizons below 30 cm depth contain about 60% of the organic carbon stored in soils. Although insight into the physical and chemical stabilization of soil organic matter (SOM) and into microbial community composition in these horizons is being gained, information on microbial functions of subsoil microbial communities and on associated microbially-mediated processes remains sparse. To identify possible controls on enzyme patterns, we correlated enzyme patterns with biotic and abiotic soil parameters, as well as with microbial community composition, estimated using phospholipid fatty acid profiles. Enzyme patterns (i.e. distance-matrixes calculated from these enzyme activities) were calculated from the activities of six extracellular enzymes (cellobiohydrolase, leucine-amino-peptidase, N-acetylglucosaminidase, chitotriosidase, phosphatase and phenoloxidase), which had been measured in soil samples from organic topsoil horizons, mineral topsoil horizons, and mineral subsoil horizons from seven ecosystems along a 1500 km latitudinal transect in Western Siberia. We found that hydrolytic enzyme activities decreased rapidly with depth, whereas oxidative enzyme activities in mineral horizons were as high as, or higher than in organic topsoil horizons. Enzyme patterns varied more strongly between ecosystems in mineral subsoil horizons than in organic topsoils. The enzyme patterns in topsoil horizons were correlated with SOM content (i.e., C and N content) and microbial community composition. In contrast, the enzyme patterns in mineral subsoil horizons were related to water content, soil pH and microbial community composition. The lack of correlation between enzyme patterns and SOM quantity in the mineral subsoils suggests that SOM chemistry, spatial separation or physical stabilization of SOM rather than SOM content might determine substrate availability for enzymatic breakdown. The correlation of microbial community composition and enzyme patterns in all horizons, suggests that microbial community composition shapes enzyme patterns and might act as a modifier for the usual dependency of decomposition rates on SOM content or C/N ratios.