Isolating spatial effects on beta diversity to inform forest landscape planning

Understanding the effects of landscapes on pest and non-pest species is necessary if regional landscape planning is to both control pests and conserve biodiversity. A first step is understanding of how both pests and non-pest species interact with the landscape configuration to determine the density of the two groups. While it is impossible to examine the occurrence and dispersal behavior of all species, different turnover rates in different species assemblages may offer general insights into responses of species assemblages. In this study I examine the distance decay of similarity of longhorned beetle assemblages in a large forest area in Indiana, USA, with minimal differences in habitat and few barriers to dispersal. Differences in beta diversity between groups are therefore likely due to dispersal distances. I found differences in turnover rates between species that decompose dead wood and those that attack living trees, and between species with different adult feeding habits. This suggests that management for simultaneous conservation and pest control is possible.     

Monoterpene composition of foliage of 9 Juniperus species

Monoterpenes in the foliage of 9 representatives of the genus Juniperus were identified using gas-liquid chromatography and mass spectrometry. α-pinene, camphene, β-pinene, sabinene, myrcene, limonene, terpinolene, linalool, camphor, β-caryophylene and α-terpineol were identified as the major monoterpenes present in Juniperus. Of 36 possible species pairings, all were distinguishable from one another on the basis of their monoterpene composition. These data indicate that monoterpene composition may be a useful taxonomic aid in the identification and classification of juniper species.     

蒲菜资源及分类研究

对３４份蒲菜资源进行较为系统的观察研究,认为蒲菜有２个种,食用假茎的为水烛,食用根状茎的是宽叶香蒲。对部分蒲菜资源作了介绍。     

梨属间及~(60)Coγ射线辐射诱变朝鲜洋梨新品系过氧化物酶同工酶的研究

试验采用聚丙烯凝胶电泳对梨属的秋子梨、沙梨、西洋梨、杜梨、矮化梨及朝鲜洋梨辐射优系共37个品种(系)嫩枝的韧皮部提取液进行过氧化物酶同工酶的测定,结果表明:梨属植物不同种间的谱带差异较大,种内品种间差异较小。矮化品种及矮化砧的谱带均较复杂,朝鲜洋梨辐射新品系的主要谱带均显现一条强谱带的缺失,或由强带向弱带的变化。由此认为用过氧化物酶同工酶来鉴定梨的种属,品种及新品种(系)的形成是一条可行的途径。     

Highways and Forest Fragmentation – Effects on Carabid Beetles (Coleoptera,Carabidae)

We conducted two studies on how highways affect their adjacent habitats by sampling carabid beetles (Coleoptera, Carabidae) in patches of formerly continuous forest next to highways. (1) We sampled carabids at 14 highway intersections near Helsinki, Finland. Each intersection (constructed 2–40 years ago) had two forested patches to study: a remnant (0.5–37.4 ha) and, isolated from the remnant by an intersection lane, an islet (size 0.2–1.8 ha). Pitfall trap catch data (2301 carabids, 25 species) showed that remnants hosted higher catches of three carabid species, and slightly higher species richness, than islets (patch-size effect). Time since intersection construction had no apparent effect on carabids. Traffic volume along the intersection lane determined the assemblage structure of carabids in dry patches, and the abundance of a forest carabid Calathus micropterus. Compared to moist patches, drier patches hosted lower catches of four generalist species; they also had different assemblages of carabids (habitat-type effect). An interaction between patch size and habitat type for a forest generalist Pterostichus oblongopunctatus indicated that the patch-size effect was dependent on habitat type. (2) We examined possible dispersal of carabids among forested patches that were separated by highway lanes in Drenthe, the Netherlands. We released 2696 marked individuals of 10 species, and recaptured 376 using dry pitfall traps. We found no evidence for inter-patch movement for nine forest species, but 22 of 225 recaptured individuals of Poecilus versicolor, an eurytopic open-habitat species, had crossed the highway. Catches of seven forest species were also significantly lower in the road verges, compared to the adjacent forests. These two studies suggest that (i) decreasing patch size negatively affects forest-carabid catch and overall species richness, (ii) habitat type can affect the intensity of the patch-size effect, (iii) carabid assemblages of forest fragments vary with traffic volume (which may be linked with urbanization), (iv) forest carabids rarely cross highways, and (v) open habitats associated with road margins are dispersal barriers for forest carabids.     

The impact of pruning and mortality on urban tree canopy volume

Urban trees provide a wide range of ecosystem services for city residents, with tall, mature trees with wide crowns generally regarded as preferable. The tree biomass which is responsible for shading, pollution removal, rain runoff retention etc. gets periodically reduced by the municipal tree management practice of pruning. This is a necessary activity, which reduces the risk of infrastructure damage and falling branches, but many estimates of ecosystem service provision in cities do not consider its impact explicitly. Tree mortality is also higher in cities, preventing trees from attaining and remaining at large sizes. This study used extensive field measurements of tree structure to estimate the impact of pruning on 8 tree species in two Italian cities: Taranto and Florence. Crown widths were reduced by 1.6 m on average, however there is large variation between species variation with branches more often being removed for thinning crowns resulting in larger gap fractions, which increased by 15% on average. No significant differences were observed for crown widths or gap fraction between trees pruned 3 and 4 years previously, suggesting that tree crowns structurally recover from pruning after 3 years. A deterministic model revealed that current urban forest pruning rates (every 6 years) and mortality (1%) may create a situation in which a city dominated by the species studied benefits from 93.5% of the maximum ecosystem services possible. This work will allow more nuanced estimates of urban forest services to be calculated.     

Genetic characterization of Allium tuncelianum: An endemic edible Allium species with garlic odor

Allium tuncelianum (Kollman) Özhatay, Matthew & ?iraneci is a native species to the Eastern Anatolia. Its plant architecture resembles garlic (Allium sativum L.) and it has mild garlic odor and flavor. Because of these similarities between two species, A. tuncelianum has been locally called “garlic”. In addition, both A. tuncelianum and garlic has 16 chromosomes in their diploid genomes. Recently, A. tuncelianum has been suggested as the wild progenitor species of garlic. In this study, amplified fragment length polymorphisms (AFLP) markers and nucleotide sequence analysis of the internal transcribed spacer region (ITS) were used to assess genetic and phylogenetic relationships among A. tuncelianum, garlic and some other Allium species. AFLP analysis demonstrated that A. tuncelianum and garlic are genetically distinct and they are likely different species. Phylogenetic analyses based on the nucleotide sequence of ITS suggested that A. tuncelianum and garlic are distinct species and placed A. tuncelianum, garlic, Allium ampeloprasum and Allium scorodoprasum into the same clade in the neighbor joining dendrogram and in the consensus tree of parsimony analysis. However, A. tuncelianum was phylogenetically less related to garlic than either A. ampeloprasum or A. scorodoprasum, suggesting that A. tuncelianum may not be the immediate wild ancestor species of garlic. Further studies to generate hybrid progeny between A. tuncelianum and garlic (if possible) could provide more information on the homology between the chromosomes of A. tuncelianum and garlic and genetic relationships between these two species.     

Physiological and biochemical studies during flower development in two rose species

The present investigation was aimed to study the changes in various physio-chemical attributes in petals of two different rose species, Rosa damascena Mill and Rosa bourboniana Desport differing in flowering behaviour from small bud (stage 1) till full bloom (stage 8). In both rose species fresh weight, dry weight and moisture content were maximum during full bloom. Electrical conductivity of the petal diffusates reached maximum at full bloom with significantly higher values in R. damascena. In both the species, starch content declined as the flower reached its full bloom stage with maximum reducing sugar content during this period. With progressive increase in petal growth, total protein and RNA declined. The results showed that in both the species peroxidase (POX) and catalase (CAT) activity were lower during full bloom with high activity of invertase and lipoxygenase (LOX) at this period. The present study indicates that lipid peroxidation induced membrane permeability could partly be the result of higher lipoxygenase activity during full bloom. The possible significance of these findings is discussed in relation to flower development in the two diverse rose species.     

Landscape perception by forest understory birds in the Atlantic Rainforest: black-and-white versus shades of grey

Even among forest specialists, species-specific responses to anthropogenic forest fragmentation may vary considerably. Some appear to be confined to forest interiors, and perceive a fragmented landscape as a mosaic of suitable fragments and hostile matrix. Others, however, are able to make use of matrix habitats and perceive the landscape in shades of grey rather than black-and-white. We analysed data of 42 Chiroxiphia caudata (Blue Manakin), 10 Pyriglena leucoptera (White-shouldered Fire-eye) and 19 Sclerurus scansor (Rufous-breasted Leaftosser) radio-tracked in the Atlantic Rainforest of Brazil between 2003 and 2005. We illustrate how habitat preferences may determine how species respond to or perceive the landscape structure. We compared available with used habitat to develop a species-specific preference index for each of six habitat classes. All three species preferred old forest, but relative use of other classes differed significantly. S. scansor perceived great contrast between old forest and matrix, whereas the other two species perceived greater habitat continuity. For conservation planning, our study offers three important messages: (1) some forest specialist species are able to persist in highly fragmented landscapes; (2) some forest species may be able to make use of different anthropogenic habitat types to various degrees; whereas (3) others are restricted to the remaining forest fragments. Our study suggests species most confined to forest interiors to be considered as potential umbrella species for landscape-scale conservation planning.     

Habitat structure mediates spatial segregation and therefore coexistence

Understanding the mechanisms driving diversity in nature is an important and ongoing challenge in our changing world. To efficiently protect ecosystem diversity it is crucial to explain why and how species coexist. Over the last decades models explaining species coexistence have increased in complexity but usually don’t incorporate a detailed spatial context. However, spatial structure has been shown to affect species coexistence and habitat deterioration is one of the biggest threats to biodiversity. We therefore explore a spatially explicit two-species model and assess the effects of habitat structure on species coexistence using a wide diversity of fractal landscapes. Each species is specialized in a particular habitat type. We find that landscape structure has a major influence on the stability and constitution of a two species system and may be sufficient to explain the coexistence of two species. Well connected and highly structured habitat configurations allow spatial segregation of both species and this decreases local interspecific competition; in our model this is the most important process stabilizing coexistence.     

Using fractal analysis to assess how species perceive landscape structure

To develop a species-centered definition of landscapes, I suggest using a fractal analysis of movement patterns to identify the scales at which organisms are interacting with the patch structure of the landscape. Significant differences in the fractal dimensions of movement patterns of two species indicate that the species may be interacting with the patch structure at different scales. Fractal analysis therefore permits comparisons of landscape perceptions of different species within the same environment.I tested the utility of this fractal application by analyzing the movement patterns of three species of acridid grasshoppers (Orthoptera) in a grassland mosaic. The largest species moved up to 6 times faster than the two smaller species, and species exhibited different responses to microlandscape structure within 25-m² plots. Further, the largest species exhibited different responses to microlandscape structure in two pastures subjected to different intensities of cattle grazing. This species thus is able to integrate information on landscape structure at broad spatial scales. Fractal analysis of movement patterns revealed that the two small species had significantly more tortuous patterns than the larger species, which suggests that these species are interacting with patch structure at a finer scale of resolution than the large species. Fractal analysis can be used to identify the perceptive resolution of a species; that is, the spatial grain and extent at which they are able to perceive and respond to heterogeneity. Analysis of movement patterns across a range of spatial scale may reveal shifts in fractal dimension that reflect transitions in how species respond to the patch structure of the landscape at different scales.     

Plant selection for rain gardens: Response to simulated cyclical flooding of 15 perennial species

Plant selection for rain gardens can be complicated, as cyclic flooding and a gradient of moisture level are expected in the depression structure of a rain garden. However, few studies to date have quantified how plant establishment is affected by rain garden moisture dynamics. This study investigated tolerance of 15 candidate perennial species, which experienced flooding cycles consisting of 1-day and 4-day inundation and draining phases. In this study, detection of species suitability using survival and growth measurements coupled with the stress indicator (i.e. chlorophyll fluorescence) provided a valid framework for wider use in plant selection for rain gardens. The methodology is also confident in predicting the possible placing in different plant moisture zones. All species survived the cyclic flooding treatments and grew to their maximum. Photosynthesis and physical growth in only a few candidate species (e.g. Amsonia tabernaemontana var. salicifolia, Gaura lindheimeri, Sanguisorba tenuifolia ‘Purpurea’ and Thalictrum aquilegifolium) tended to be inhibited by treatments adopting 4-day cyclic flooding, whilst tolerance to 1-day cyclic flooding was clearly demonstrated in most species. Analysis suggests that most species assumed to withstand infrequent to periodic inundation, such as Iris sibirica, Filipendula purpurea and Miscanthus sinensis, are resilient species and are sensible for use in a wider range of rain garden moisture conditions from damp depression bottom to dry margin. Species assumed to be intolerant of inundation such as Gaura lindheimeri may be successful in the rain garden environment, but they are recommended for the dryer zones.     

Estimation and prediction of plant species richness in a mosaic landscape

Traditional agricultural mosaic landscapes are likely to undergo dramatic changes through either intensification or abandonment of land use. Both developmental trends may negatively affect the vascular plant species richness of such landscapes. Therefore, sustainable land-use systems need to be developed to maintain and re-establish species richness at various spatial scales. To evaluate the sustainability of specific land-use systems, we need approaches for the effective assessment of the present species richness and models that can predict the effects on species richness as realistically as possible. In this context, we present a methodology to estimate and predict vascular plant species richness at the local and the regional scale. In our approach, the major determinants of vascular plant species richness within the study area are taken into consideration: These are according to Duelli's mosaic concept the number of habitat types and of habitat patches within area units. Furthermore, it is based on the relative frequencies of species within habitat types. Our approach comprises six steps: (i) the determination of present habitat patterns within an observation area, (ii) the creation of a land-use scenario with simulated habitat patterns, (iii) the determination of species frequencies within habitat types of this area, (iv) a grouping of habitat-specific species, (v) the estimation of the probabilities for all species (or habitat specialists) to occur, either in stepwise, exponentially enlarged landscape tracts (local scale), or in the entire observation area (regional scale), and (vi) the validation of the estimated species numbers. The approach will be exemplified using data from the municipal district of Erda, Lahn-Dill Highlands, Germany. The current species numbers to be expected on the basis of probability calculations were compared with those recorded on the basis of extensive field work. This comparison shows that, on the basis of our simple calculations, the current local plant species richness can be predicted well, with a slight underestimation. This revised version was published online in May 2005 with corrections to the Cover Date. This revised version was published online in July 2006 with corrections to the Cover Date.     

水分胁迫下苹果实生苗茉莉酸的积累及其与水分的关系

 用气相色谱法测定苹果抗旱种新疆野苹果[Malus sieversii (Ledb) Roem. ]和较不抗旱种平邑甜茶[M. hupehensis (Pamp) Rehd.]根系、叶片和木质部汁液茉莉酸(jasmonic acid , JA) 对快速和缓慢水分胁迫的反应。结果表明, 两个种对水分胁迫反应灵敏。水分胁迫下两个种叶片气孔阻力与根系、木质部汁液中JA 含量呈显著对数相关关系, 而与叶片中JA 含量相关不显著。     

Comparative influence of isolation,landscape, and wetland characteristics on egg-mass abundance of two pool-breeding amphibian species

The distribution and abundance of species are shaped by local and landscape processes, but the dominant processes may differ with scale and increasing human disturbance. We investigated population responses of two pool-breeding amphibian species to differences in local and landscape characteristics in suburbanizing, southeastern New Hampshire, USA. In 2003 and 2004, we sampled 49 vernal pools for spotted salamander (Ambystoma maculatum) and wood frog (Lithobates sylvaticus) egg masses. Using egg masses as a proxy for breeding-female population size, we examined the relative influence of five land-use and three isolation variables at two scales (300 and 1000 m) and five wetland variables on egg-mass abundance. For both species, road density at the landscape scale (1000 m) and hydroperiod most strongly predicted egg-mass abundance, with abundance decreasing as roads became denser and hydroperiods shortened. Wetland isolation was also an important predictor, with abundance greatest at more isolated pools, suggesting that both species concentrate at isolated pools when alternative breeding sites are scarce. Surprisingly, no 300-m parameters were strongly associated with salamander egg-mass abundance, whereas several landscape parameters were. In suburbanizing areas, it is at least as important to consider landscape-scale road density as to consider hydroperiod when designing conservation plans for these species. Furthermore, both isolated and clustered pools provide these species important habitat and may require protection. Finally, the conceptual framework for spotted-salamander management must be expanded so that spatial configuration at the landscape scale becomes a regular, integrated component of conservation planning for this species.     

Landscape genetics of the foundational salt marsh plant species black needlerush (<Emphasis Type="Italic">Juncus roemerianus</Emphasis> Scheele) across the northeastern Gulf of Mexico

Context

Common species important for ecosystem restoration stand to lose as much genetic diversity from anthropogenic habitat fragmentation and climate change as rare species, but are rarely studied. Salt marshes, valuable ecosystems in widespread decline due to human development, are dominated by the foundational plant species black needlerush (Juncus roemerianus Scheele) in the northeastern Gulf of Mexico.

Objectives

We assessed genetic patterns in J. roemerianus by measuring genetic and genotypic diversity, and characterizing population structure. We examined population connectivity by delineating possible dispersal corridors, and identified landscape factors influencing population connectivity.

Methods

A panel of 19 microsatellite markers was used to genotype 576 samples from ten sites across the northeastern Gulf of Mexico from the Grand Bay National Estuarine Research Reserve (NERR) to the Apalachicola NERR. Genetic distances (F_ST and D_ch) were used in a least cost transect analysis (LCTA) within a hierarchical model selection framework.

Results

Genetic and genotypic diversity results were higher than expected based on life history literature, and samples structured into two large, admixed genetic clusters across the study area, indicating sexual reproduction may not be as rare as predicted in this clonal macrophyte. Digitized coastal transects buffered by 500 m may represent possible dispersal corridors, and developed land may significantly impede population connectivity in J. roemerianus.

Conclusions

Results have important implications for coastal restoration and management that seek to preserve adaptive potential by sustaining natural levels of genetic diversity and conserving population connectivity. Our methodology could be applied to other common, widespread and understudied species.

     

Predicting broad-scale occurrences of vertebrates in patchy landscapes

Spatially explicit landscape-scale models that predict species distributions, where patches of habitat are shown as having potential to be occupied or unoccupied, are increasingly common. To successfully use such data, one should understand how these predicted distributions are created and how their relative accuracies are assessed. Geographic ranges, defined upon observations (e.g., atlases), literature review, and expert review, are a primary data layer. A map of land cover is created, often from interpretation of satellite imagery or other remotely-sensed data. Species/habitat associations are defined based upon a literature review and expert review, describing associations for habitats derived from the cover map. Included as ancillary associations are how species relate to physical features, where appropriate, such as elevation and hydrography. The three layers of information (range, land cover, and associations) are merged, often using raster-based algebraic statements that exclude unused habitats or patches outside the range of a species. The accuracy of predictions for a suite of species is typically assessed with surveys by comparing the species predicted to occur in an area to the species observed. Omission (i.e., present in species lists but not predicted) and commission (i.e., predicted but not present in lists) errors are reported. Errors may be due to many sources. For example, ranges of species change, cover types may be misidentified, species/habitat associations may be incorrect or change, or species may be rare and unlikely to be seen in surveys and judged in-error even though the species may be present. An example is given of an appropriate use of broad-scale species predicted distributions, in which patterns and threats to Maine terrestrial vertebrate diversity are summarized.     

Linking life history traits to pollinator loss in fragmented calcareous grasslands

To gain insight into the drivers of pollinator loss, a holistic approach to land-use change including habitat size, isolation, habitat quality and the surrounding landscape matrix is necessary. Moreover, species’ responses to land-use change may differ depending on their life history traits such as dispersal ability, trophic level, or sociality. We assessed species richness and life history traits of wild bees in 32 calcareous grasslands in central Germany that differ in size, connectivity, resource availability and landscape context. Declining habitat area and, to a lesser degree, reduced diversity of the surrounding landscape were the key factors negatively influencing species richness. In the community-wide analysis, small body size and solitary reproduction were traits that made species particularly vulnerable to habitat loss. Contrary to our expectations, cleptoparasitic species were not more affected by reduced habitat area and landscape diversity than nest-building species. We performed further detailed trait analyses within the family Halictidae to prevent possible confounding effects due to trait correlations across families. Here, social as opposed to solitary species were more affected by habitat loss. We conclude that the opposite pattern observed for all social bees was mainly caused by large-sized social bumblebee species with high mobility and large foraging distances. Our results demonstrate the risks of concealed trait interference when analyzing community-wide patterns of life history traits. As a consequence, conservation requirements of small social bee species might be overlooked by generalizations from community responses.     

Amplified fragment length polymorphism (AFLP) markers for fingerprinting of Argyranthemum frutescens cultivars

Argyranthemum frutescens is a commercially important ornamental species with extensive breeding programmes in several countries. Since it is vegetatively propagated there is a great need for tools for identification of cultivars. Vegetatively propagated species require clean-up from diseases, often performed through meristem-tip cultures. Forty-three cultivars of A. frutescens propagated by meristem-tip culture and traditional cuttings were analyzed for genetic relatedness and possible somaclonal variation using AFLP. Five primer combinations resulted in a relatively high degree of polymorphism. Ten molecular markers generated by one primer combination could distinguish between all 43 cultivars. Differences in fingerprints between meristem-tip culture and cuttings from the same cultivars were found, but the proportion of fragments being specific for either tissue culture or cuttings was relatively low. Some cultivars that did not display somaclonal variation as judged by the AFLP-fingerprints may still be genetically unstable since some morphological variation was observed in the true to type test.     

Effects of increasing landscape heterogeneity on local plant species richness: how much is enough?

Contemporary landscape ecology continues to explore the causes and consequences of landscape heterogeneity across a range of scales, and demands for the scientific underpinnings of landscape planning and management still remains high. The spatial distribution of resources can be a key element in determining habitat quality, and that in turn is directly related to the level of heterogeneity in the system. In this sense, forest habitat mosaics may be more affected by lack of heterogeneity than by structural fragmentation. Nonetheless, increasing spatial heterogeneity at a given spatial scale can also decrease habitat patch size, with potential negative consequences for specialist species. Such dual effect may lead to hump-backed shape relationships between species diversity and heterogeneity, leading to three related assumptions: (i) at low levels of heterogeneity, an increase in heterogeneity favours local and regional species richness, (ii) there is an optimum heterogeneity level at which a maximum number of species is reached, (iii) further increase in spatial heterogeneity has a negative effect on local and regional species richness, due to increasing adverse effects of habitat fragmentation. In this study, we investigated the existence of a hump-shaped relationship between local plant species richness and increasing forest landscape heterogeneity on a complex mosaic in the French Alps. Forest landscape heterogeneity was quantified with five independent criteria. We found significant quadratic relationships between local forest species richness and two heterogeneity criteria indicators, showing a slight decrease of forest species richness at very high heterogeneity levels. Species richness–landscape heterogeneity relationships varied according to the heterogeneity metrics involved and the type of species richness considered. Our results support the assumption that intermediate levels of heterogeneity may support more species than very high levels of heterogeneity, although we were not able to conclude for a systematic negative effect of very high levels of heterogeneity on local plant species richness.