Genetic bottlenecks in agroforestry systems: results of tree nursery surveys in East Africa

Seedlings sourced through tree nurseries are expected to form an important component of future tree cover on farms. As such, the genetic composition of nursery seedlings is expected to impact on the productivity and sustainability of agroforestry ecosystems. By surveying current practices of nursery managers in five areas from Kenya, Tanzania and Uganda, we quantified parameters associated with the collection, production and distribution of tree germplasm in East Africa. Considerable variation for seed-propagated nursery species was observed in the number of maternal parents (mother trees) sampled to establish nursery lots, the quantity of seedlings raised in nursery lots and the projected number of clients for nursery lots. Current seed collection practice was the most obvious limiting bottleneck in delivering high levels of genetic diversity to farmers. In the 143 cases analysed, seed to establish nursery lots was collected from a mean of only 6.4 maternal parents. In 22% of cases, ursery lots were established from a single maternal parent. On average, each maternal parent produced sufficient progeny to provide all the seedlings received by an individual nursery client. Consequently, the potential impact on farm and landscape genetic diversity of possible non-randomisation of progeny within nurseries is serious. In two instances, pair-wise analysis of transformed data suggested significant differences between geographic areas in the projected number of clients for nursery lots. We discuss improved nursery practices likely to promote genetic diversity, in particular increased maternal parent sampling and germplasm exchange.     

Dry matter production and nutrient cycling in agroforestry systems of cardamom grown underAlnus and natural forest

A study on dry matter production and nutrient cycling in agroforestry systems of cardamom grown under N₂-fixingAlnus and mixed tree species (non-N₂-fixing) was carried out in the Sikkim Himalaya. The stand total biomass, and tiller number, basal area and biomass of cardamom crop was much higher under the influence ofAlnus. Annual net primary productivity ofAlnus trees was slightly higher than mixed tree species in spite of lower stand density ofAlnus. The agronomic yield of cardamom increased by 2.2 times under the canopy ofAlnus. Litter production and its disappearance rates were also higher in theAlnus-cardamom stand. Nitrogen and phosphorus concentrations of different components ofAlnus were higher than those of mixed tree species, whereas their back translocation from leaf before abscission was lower inAlnus. The cardamom based agroforestry system under the influence ofAlnus was more productive with faster rates of nutrient cycling. The poor nutrient conservation and low nutrient use efficiency ofAlnus, and malleability of nutrient cycling under its influence make it an excellent association which promotes higher availability and faster cycling of nutrients.     

Management of secondary tree species in agroforestry systems to improve production sustainability in Amazonian Ecuador

Three production systems (robusta coffee, cattle pastures and swidden agriculture), all associated with trees, have provided a strategy for regional development in the Ecuadorian Amazon. Feedback from more than 250 on-farm demonstrations, project evaluations and visitors have all contributed to strengthening the ability of the Ecuadorean Ministry of Agriculture's Forestry Directorate to provide colonists and indigenous groups with management guidelines for low-input sustainable agroforestry production. The existing market for 20 fastgrowing native tree species presents an opportunity for the diversification of farm income (currently dependent on robusta coffee) and for the development of a forest industrial base.The collective area of land owned and operated by these small holders constitutes a national resource and a Collective Forest Estate that can be individually managed. Commercial timber production in these extensive secondary forests can help alleviate conversion of primary forest without taking agricultural land out of production.     

A population genetic study in a scattered forest species, wild service tree [Sorbus torminalis (L.) Crantz], using RAPD markers

Wild service tree [Sorbus torminalis (L.) Crantz] is a forest tree widespread in Europe, characterized by a scattered distribution. Its hermaphroditic flowers are pollinated by insects, and outcrossing is the prominent mating system, also due to the presence of gametophytic self-incompatibility. Genetic diversity and differentiation of 22 populations from northwestern Italy were investigated by means of variation scored at 53 polymorphic RAPD (Random Amplified Polymorphic DNA) loci. Populations differed in genetic variation, with Shannon diversity index ranging from 0.166 to 0.469. According to Analysis of Molecular Variance (AMOVA), most of the genetic variation was found within populations (61.78%) with a significant proportion of variance attributable to genetic differences between regions (23.60%) and between populations (14.62%). Evidence for isolation by distance was found in the set of populations sampled. The effect of habitat fragmentation on genetic variation was also evaluated. The efficacy of RAPD markers in analysing genetic variation, and the contribution of the results in terms of the preservation of biodiversity are discussed.     

Traditional agroforestry systems as tools for conservation of genetic resources of Milicia excelsa Welw. C.C. Berg in Benin

The potential contribution of agroforestry systems to the management and genetic resources conservation in iroko (Milicia excelsa), an important and valuable timber tree species in sub-Saharan Africa, is addressed in this paper. The structure and dynamics of traditional agroforestry systems and the ecological structure of Milicia excelsa populations in farmlands were studied through a survey carried out in 100 farmlands covering the natural range of iroko in Benin. Forty-five species belonging to 24 plant families were recorded in traditional agroforestry systems. Average tree density varied from 1 to 7 stems ha⁻¹ with diversity index ranging from 2.6 to 2.9. Milicia excelsa occurred sparsely in agroforestry systems in all regions, with density ranging from 1 to 4 stems ha⁻¹; stand basal area varying from 33.10⁻⁴ to 129.10⁻⁴ m² ha⁻¹, and negligible seedling regeneration. However, male and female trees were apparently evenly distributed on farmlands in all regions (F/M > 0). Iroko trees produced viable seeds with moderate germination rate and early growth (germination rate 22% and height 7.29 cm after 3 months). Suggestions are made regarding optimal densities for iroko conservation in farmlands, according to farmers’ socioeconomic conditions in different regions, in order to improve traditional agroforestry systems and their use as biological corridors in conservation of Milicia excelsa genetic resources.     

Initial growth of pioneer timber tree species in a Taungya system in the humid lowlands of Costa Rica

The temporary association of annual crops in juvenile tree plantations (Taungya system) can reduce or offset the initial costs of reforestation and hence provide incentives for tree planting on private farms. A replicated systematic spacing design, derived from a Nelder-fan design, was used to study the effects of tree-crop distance on growth and development of the timber species salmwood (Cordia alliodora) or eucalyptus (Eucalyptus deglupta), associated with maize (Zea mays) or cassava (Manihot esculenta), during the first year after transplanting the trees on two sites on alluvial soils in the humid lowlands of Costa Rica. Association with maize did not affect mean tree growth. However, mean eucalyptus and salmwood heights of 7–8 m and 3–4 m, respectively, after one year in pure plantation or associated with maize, were only 4.7 m and 1.4 m, respectively, when associated with cassava. Wider tree – crop spacings were more important for initial salmwood growth than for eucalyptus. It was concluded that the shoot growth characteristics (continuous or episodical growth) of the timber species is a very important consideration when selecting associated agricultural crop species and tree-crop distances.     

Dry matter production and nutrient cycling in agroforestry systems of mandarin grown in association with Albizia and mixed tree species

A study on dry matter production and nutrient cycling in agroforestry systems of mandarin grown in association with N₂-fixing Albizia and mixed tree species (non-N₂-fixing) was carried out in the Sikkim Himalaya. A site with Albizia was referred asAlbizia-mandarin stand and the other site with mixed tree species as mandarin stand. The stand total biomass, net primary productivity and mandarin fruit production was higher under the influence of Albizia. Agronomic yield of crops remained nearly the same in both the stands. Nitrogen and phosphorus concentrations of different components of Albizia were higher than those of mixed tree species, whereas their back translocation from leaf to branch before abscission was lower inAlbizia. The mandarin-based agroforestry is a highly nutrient-exhaustive system evaluated in terms of nutrient exit through the removal of agronomic yield. This system, under the influence of Albizia, was more productive with faster rates of nutrient cycling. Nutrient use efficiency increased under the influence of Albizia, in contrary to the hypothesis that efficiency should decrease with increasing rate of uptake. The poor nutrient conservation of Albizia, and malleability of nutrient cycling under its influence make it an excellent association which promotes higher availability and faster cycling of nutrients.Albizia should be utilised more extensively in the management of mandarin-based agroforestry systems.     

Diversity and genetic structure of teak (<Emphasis Type="Italic">Tectona grandis</Emphasis> L.f) in its natural range using DNA microsatellite markers

Teak (Tectona grandis L.f.) is considered to be an extraordinarily durable building timber with a worldwide reputation. Its widespread use has entailed the over-exploitation of natural forests and a large reduction in natural diversity. Fifteen microsatellite markers were used to study the genetic variability and structure of 166 teak trees distributed over the whole natural area of teak. Analysis showed that in the teak natural area there were four main centers of genetic variability. Two clusters were in India and could be considered as main centers of genetic diversity in teak. The third cluster mainly consisting of populations in Thailand and Laos was genetically very distinct from the Indian populations but presented only half as much allelic variability. A fourth cluster from Central Laos showed even less genetic variability. The use of SSR markers for conservation of teak forest diversity is discussed.     

Influence of different forest conversion strategies on ground vegetation and tree regeneration in pine (<Emphasis Type="Italic">Pinus sylvestris</Emphasis> L.) stands: a case study in NE Germany

The conversion of anthropogenic into more natural, self-regenerating forests is one of the major objectives of forestry throughout Europe. In this study, we present investigations on permanent plots with different silvicultural treatment in NE German pine stands. Management of old-growth pine stands on acidic and nutrient-poor sandy sites differs in fencing, thinning, and planting of certain tree species. The investigations were carried out on the community, population, and individual level of the pine forest ecosystems. Thus, vegetation changes, size and height of tree populations, and height increment of tree individuals were observed over a time span of 6 years. Special attention was paid to short-lived tree species such as, e.g., Frangula alnus and Sorbus aucuparia, as well as to Fagus sylvatica as one of the most typical forest tree species of Central Europe. Vegetation changes are interpreted as a consequence of natural regeneration of formerly degraded forest sites, involving an increase in nutrient availability. High browsing pressure can be considered as a key factor for the inhibition of tree seedlings and growth of saplings. Some Sorbus aucuparia individuals, however, succeeded in growing out of the browsing height also in unfenced stands. Few found specimens of Fagus sylvatica proved that this species is able to establish spontaneously on these relatively dry, acidic sites under continental climate influence. Such natural regeneration processes, also including spontaneous rejuvenation of trees, can be integrated into silviculture as passive forest conversion management. An active management like thinning of stands, planting of trees, and fencing can accelerate forest conversion with regard to height growth and species number of trees.     

Genetic diversity of Lithocarpus harlandii populations in three forest communities with different succession stages

By using random amplified polymorphic DNA (RAPD) technique, this paper studied the genetic diversity and genetic differentiation of Lithocarpus harlandii populations in three forest communities (coniferous forest, coniferous and broad-leaved mixed forest, and evergreen broad-leaved forest) with different succession stages in Tiantai Mountain in Zhejiang Province. The results showed that a total of 173 repetitive loci were produced in 60 individuals of L. harlandii by 12 random primers, among which, 152 loci were polymorphic, and the total percentage of polymorphic loci was 87.86%. The average percentage of polymorphic loci of the populations was 65.32%, and their total genetic diversity estimated by Shannon information index was 0.4529, with an average of 0.3458, while that judged from Nei’s index was 0.3004, with an average of 0.2320. The percentage of polymorphic loci, Shannon information index, and Nei’s index of the populations were in the sequence of coniferous forest community > coniferous and broad-leaved mixed forest community > evergreen broad-leaved forest community. Analysis of molecular variance (AMOVA) showed that 72.85% of genetic variance was found within the populations, and 27.15% of genetic variance resided among the populations. The coefficient of gene diferentiation was 0.2277, and the gene flow was 1.6949. The genetic structure of L. harlandii was influenced not only by the biological characteristics of this species, but also by the microenvironment of different communities. The mean of genetic identity among three populations of L. harlandii was 0.8662, and the mean of their genetic distance was 0.1442. The genetic similarity between coniferous and broad-leaved mixed forest community and evergreen broad-leaved forest community was the highest, while that between evergreen broad-leaved forest community and coniferous forest community was the lowest. The unweighted pair group method with arithmeticmean (UPGMA) cluster analysis based on Nei’s genetic distance showed that conierous and broad-leaved mixed forest community first gathered with evergreen broad-leaved forest community, and then with coniferous forest community. __________ Translated from Chinese Journal of Ecology, 2007, 26(4): 509–514 [译自: 生态学杂志]     

Genetic diversity of Quercus glandulifera var. brevipetiolata populations in three forest communities with different succession stages

In order to understand the relationship between population succession and its genetic behavior, random amplified polymorphic DNA (RAPD) technique was used to analyze the genetic diversity of Quercu glandulifera var. brevipetiolata populations in three forest communities with different succession stages (coniferous forest, coniferous and broad-leaved mixed forest, evergreen broad-leaved forest). The results showed that 145 repetitive loci were produced in 60 individuals of Q. glandulifera using 11 primers, among which 120 loci were polymorphic, and the total percentage of polymorphic loci was 82.76% with an average of 64.14%. Estimated by the Shannon information index, the total genetic diversity of the three populations was 0.4747, with an average of 0.3642, while it was 0.3234, with an average of 0.2484, judged from the Nei index. Judged from percentage of polymorphic loci, Shannon inform at ion index and Nei index, the genetic diversity followed a decreasing order: coniferous forest > broad-leaved mixed forest > evergreen broad-leaved forest. Analysis of molecular variance (AMOVA) showed that 69.73% of the genetic variance existed within populations and 30.27% of the genetic variance existed among populations. The coefficient of gene differentiation (GST) was 0.2319 and the gene flow (N _m) was 1.6539. The mean of genetic identity among populations of Q. glandulifera was 0.8501 and the mean of genetic distance was 0.1626. The genetic identity between the Q. glandulifera population in the coniferous forest and that in the coniferous and broadleaved mixed forest was the highest. UPGMA cluster analysis based on Nei’s genetic distance showed that the population in the coniferous forest gathered with that in the coniferous and broad-leaved mixed forest firstly, then with that in the evergreen broad-leaved forest. The genetic structure of Q. glandulifera was not only characteristic of the biological characteristics of this species, but was also influenced by the microenvironment in different communities. __________ Translated from Journal of Northwest Forestry University, 2008, 23(1): 18–22 [译自: 西北林学院学报]     

Production and phenology of the fruit shrub Eugenia stipitata in agroforestry systems in Costa Rica

Arazá (Eugenia stipitata), a fruit shrub originating from Western Amazonia, was evaluated growing in association with timber shade trees (Acacia mangium or Cordia alliodora) or with plantain (Musa sp.) as a potential commercial species for the tropical moist lowlands of Talamanca, Costa Rica. Height and crown width of the four-year-old shrubs varied between 2.7–2.8 m and 2.9–3.1 m, respectively. Flowering was positively correlated with initial fruit formation 1 month later and initial fruit formation with fully developed fruits a subsequent month after that. Three to four-year-old plants produced 20.0, 20.0, and 24.5 t ha⁻¹ yr⁻¹ (fresh fruits) in associations with A. mangium, C. alliodora and plantain, respectively, with higher production in rainy months. Fruit production in later years under C. alliodora (six to eight-year-old shrubs) was 26.5 t ha⁻¹ yr⁻¹. Where markets exist for E. stipitata fruit, the association can be recommended for tropical humid lowlands of Central America.     

Evaluation of native tree species for the rehabilitation of deforested areas in a Mexican cloud forest

Four native tree species (Liquidambar styraciflua, Juglans pyriformis, Podocarpus matudae, and Carpinus caroliniana) were evaluated for their suitability in rehabilitating degraded areas of Mexican cloud forest. Plant survival and growth in height and diameter were determined in three mixed-experimental plantations with different land use histories; their performance was compared with two on-farm plantations started by landowners for forest restoration. Nearby forest fragments were controls for soil compaction. An experimental plantation with remnant trees had the highest plant survival (82%), height, basal diameter and relative growth rate. The plantation with the steepest slope had high plant survival (63%) and growth. The plantation characterized by dominance of grasses and compacted soils had the lowest survival (22%) and growth. On-farm plantations had good establishment of planted trees (5–10 species planted), and facilitated the recruitment of 9–11 woody species. Carpinus and Liquidambar appear to be suitable species for reforestation in all these areas. Podocarpus grew relatively slowly, although it performed well in two experimental sites. Juglans had high survival (76%) under the stressful conditions of the most adverse site, and therefore may be useful for rehabilitation of degraded sites. Differences among species and sites strongly suggest that species success depends on plantation site quality.     

Allelopathy in agroforestry systems: the effects of leaf extracts ofCupressus lusitanica and threeEucalyptus spp. on four Ethiopian crops

The potential allelopathic effect ofCupressus lusitanica, Eucalyptus globulus, E. camaldulensis andE. saligna on seed germination, radicle and seedling growth was investigated with four crops:Cicer arietinum (chickpea),Zea mays (maize),Pisum sativum (pea) andEragrostis tef (teff). Aqueous leaf extracts of all the tree species significantly reduced both germination and radicle growth of the majority of the crops mostly starting from concentrations of 1% or 2.5%. The shoot and root dry weight increase of the crops was significantly reduced after 10 weeks treatment with leaf extracts. Among the four crops, chickpea and teff were most susceptible with respect to germination, and teff with respect to growth. From the overall data the leaf extracts of the four tree species can be arranged according to increasing allelopathic potential:C. lusitanica, E. globulus, E. saligna andE. camaldulensis. It is suggested that the planting ofE. camaldulensis andE. saligna in integrated land use systems should be minimized, whereas the use ofC. lusitanica andE. globulus seems less environmentally damaging in this respect.     

Analyses of the genetic diversity of matsutake isolates collected from different ecological environments in Asia

Matsutake mushrooms are able to grow in two kinds of ecological environments: coniferous forests and broadleaf forests. Japanese matsutake is a form of the matsutake mushroom that mainly appears in coniferous forests in the mid-latitude regions of Asia. In contrast, matsutake from Yunnan and Sichuan Provinces of China grows in broadleaf forests in low-latitude regions. The taxonomic relationship and the genetic distance between these two types of matsutake remain unclear. Here, we compared the random amplification of polymorphic DNA (RAPD) data and the sequences of the internal transcribed spacer (ITS) region and of variable domains V4, V6, and V9 of mitochondrial small subunit ribosomal DNA (mt SSU rDNA) to determine the genetic differences of Tricholoma matsutake strains collected from different ecological and geographic environments in Asia. We found few differences in the sequences of the variable domains, implying that all matsutake strains are the same biological species regardless of their host specificity and geographical differences. This conclusion is also supported by the sequences of the ITS region. On the other hand, RAPD analysis revealed that the matsutake mushrooms collected from different ecological environments have genetic differences and represent distinct varieties.     

Impact of selective logging on genetic diversity of two tropical tree species with contrasting breeding systems using direct comparison and simulation methods

The impact of selective logging on genetic diversity of two tropical tree species with contrasting breeding systems was examined using direct comparison and simulation methods. Shorea leprosula is a diploid and predominantly outcrossed species, whereas Shorea ovalis ssp. sericea is an autotetraploid species with apomictic mode of reproduction. Direct comparison of adjacent natural and logged-over stands showed reduction of genetic diversity of S. leprosula, but not of S. ovalis ssp. sericea. These results clearly demonstrated that a single logging event would cause the genetic erosion of S. leprosula. However, the apomictic mechanisms and the effects of tetrasomic inheritance of S. ovalis ssp. sericea might be a way of maintaining the level of genetic diversity. These results clearly implied that outcrossing species might be more susceptible to the negative impact of logging on genetic diversity than apomictic species. Simulation studies were conducted using three approaches: (1) simulated-removal of individuals based on diameter size classes; (2) simulated-removal of individuals at random; and (3) simulated-removal of individuals in clump. The simulation study based on the first approach showed that the loss of genetic diversity was higher for the Malayan Uniform System (MUS) compared with the Selective Management System (SMS). This might suggest that SMS is more orientated towards the conservation of genetic diversity. In addition, the simulation study showed that to conserve 100% of the total number of alleles, the tolerable cutting limits of S. leprosula in the 50-ha plot of Pasoh FR should be >85 cm diameter at breast height (dbh). Comparison of simulation studies based on the second and third approaches showed that the loss of genetic diversity was more rigorous if logging activities were anticipated through extraction of trees in clump rather than to extract trees at random. Implications of the studies for conserving and managing the tropical forests are discussed.     

Small-scale genetic diversity in oneseed hawthorn (<Emphasis Type="Italic">Crataegus monogyna</Emphasis> Jacq.)

We have examined the pattern of random amplified polymorphic DNA (RAPD) variation among six populations of Crataegus monogyna from northern Italy, extending over an area of about 20,000 km². The aim was to evaluate local differentiation in relation to geographical distance. Of the 73 loci analysed, 65 were polymorphic, and there were no bands at complete fixation at the population level. The mean genetic diversity was 0.291, with the values for individual populations ranging between 0.252 and 0.333. According to the analysis of molecular variance most of the genetic variation was found within populations (about 80%), with a significant proportion being attributable to genetic differences between populations. No evidence for isolation by distance was found in the set of populations sampled. The efficacy of RAPD markers in analysing genetic variation, and the contribution of the results in terms of the preservation of biodiversity and defining the most appropriate strategies for collecting forest reproductive material, are discussed.     

Adoption potential of selected organic resources for improving soil fertility in the central highlands of Kenya

Soil fertility decline is the major cause of declining crop yields in the central highlands of Kenya and elsewhere within the African continent. This paper reports a study conducted to assess adoption potential of two leguminous trees, two herbaceous legumes, cattle manure, and Tithonia diversifolia either solely applied or combined with inorganic fertilizer, for replenishing soil fertility in the central highlands of Kenya. The study examined biophysical performance, profitability, feasibility and acceptability, and farmers experiences in managing and testing the inputs. The study was based on a series of studies incorporating both sociological and experimental approaches for two and a half years. Results of on farm trials showed that manure + fertilizer and tithonia + fertilizer treatments increased yields by more than 100% above the control. These treatments were the most profitable having highest net benefits and benefit cost ratios. They were also the most commonly preferred by farmers who used them on larger plots compared to the other inputs. In conclusion, cattle manure and tithonia were found to be the organic materials with the highest adoption potential for soil fertility improvement in this area. Calliandra calothyrsus and Leucaena trichandra, on the other hand, have potential for use as animal fodder. The herbaceous legumes had the least adoption potential due to poor performance recorded on the farms that possibly led to low preference by the farmers. However, issues of sustainable seed production could have played a role. This study recommends some policy issues for enhancing adoption and research issues focusing on exploring strategies for increasing biomass production and use efficiency on farms. Andre Bationo was formerly working for Tropical Soil Biology and Fertility Institute of CIAT (TSBF-CIAT) as the African network Coordinator.     

Reconstitution of a lost forest tree population: A case study of Norway spruce (Picea abies [L.] Karst.)

A population of Norway spruce (Picea abies (L.) Karst.) from southern Poland, named Kolonowskie 0293, exhibited a very high breeding value among 1100 European populations tested in the IUFRO 1964/1968 provenance experiment. However, the original mother stand of that population no longer exists. Owing to international cooperative efforts, a reconstituted clonal seed orchard of that population was successfully established to protect the gene pool of the Kolonowskie 0293 population.