Classification of GA response,Rht genes and culm length in Japanese varieties and landraces of wheat

Summary The GA response, Rht genes and culm length of 133 Norin varieties, 6 breeding lines and 16 landraces of Japanese wheat were investigated. Out of 133 Norin varieties tested, 103 were GA-insensitive and 30 GA-responsive. The 6 breeding lines were all GA-insensitive. Out of 16 landraces tested, 10 were GA-insensitive and 6 GA-responsive. Among the 10 GA-insensitive landraces, only Daruma had a Rht1 genotype. The other 9 had a Rht2 genotype. None of the landraces tested carried both Rht1 and Rht2 or Rht3. Out of the 103 GA-insensitive Norin varieties, 22 carried only Rht1, another 79 carried only Rht2, and only Norin 10 and Kokeshikomugi carried both Rht1 and Rht2. No tested variety carried Rht3. Some Norin varieties carrying Rht2 showed tall culms comparable to that of the rht tester line Chinese Spring. These results suggest that these varieties had a nullifier or modifier gene(s) or height promoting genes in the background controlling the height-reducing effect of Rht2. Conversely, six GA-responsive Norin varieties were as short as Akakomugi which carries the GA-responsive Rht genes, Rht8 and Rht9. The also seemed to carry a GA-responsive Rht gene or genes, and moreover all but one may carry gene(s) other than the Akakomugi genes. The origin of Rht1 and Rht2 of Norin 10 was speculated on the GA-response and Rht genotypes of its related varieties and landraces.     

Identification of GA-insensitive Rht genes in Japanese modern varieties and landraces of wheat

Summary GA-insensitive Rht genes of 18 Japanese modern varieties and landraces were identified. Out of 12 modern varieties tested 6 carried only Rht1, and the other 6 carried only Rht2. No varieties carried both Rht1 and Rht2 or Rht3. The geographical distribution of the Rht genotypes in the Japanese modern varieties was clearly localized. All 6 landraces tested carried only Rht2.     

Yield, biomass and yield components in dwarf, semi-dwarf and tall isogenic lines of spring wheat under recommended and late sowing dates

Grain yield and some of its physiological determinants were analysed in a field study conducted over two growing seasons with standard-height (SH), semi-dwarf (SD) and dwarf (DD) isogenic lines of a spring wheat sown at recommended and delayed dates. The objective was to test whether the action of Rht1 and Rht2 alleles in improving grain yield depended upon sowing date. As expected, the dwarfing genes significantly reduced plant height in both sowings and growing seasons. There was a tendency for the SD line to produce more biomass than the SH and DD lines, although the differences were mostly not significant. Harvest index was linearly and negatively related to plant height. Consequently, the SD and SH line showed the highest and lowest grain yields in all environments. The optimum height for grain yield was estimated to be c. 70 cm, and this value was not affected by sowing date. Lines carrying Rht1 and/or Rht2 alleles always showed more grains/m² (owing to an increased number of grains per spike and spikes/m²) than the SH line. Conversely, average grain weight was negatively associated with the number of grains/m². Because the slope of this negative relationship was smaller (less negative) than that representing complete compensation, the relationship between grain yield and number of grains/m² was hyperbolic. Although these relationships are frequently regarded as a reflection of increased competition among grains when the number of grains/m² is increased owing to the use of semi-dwarf genes, two alternative hypotheses are analysed and discussed.     

In vitro culture variation of wheat and rye caused by genes affecting plant growth habit in vivo

Summary The influence of genes affecting the plant growth habit in wheat (Rht8 and Ppd1) and rye (ct1 and ct2) on tissue culture response was studied using immature embryos. Whereas the semi-dwarfing gene Rht8 seems to promote only a minor effect, the day-length sensitive allele ppd1 determined a major increase in callus growth and regeneration ability. With regards to their tissue culture efficiency, the four alleles studied could be ranked as follows: ppd1>Rht8>rht8>Ppd1.In contrast to wheat, the GA insensitive semi-dwarfing genes of rye (ct1 and ct2) appear not to influence in vitro response.     

The effect of major dwarfing genes on yield potential in spring wheats

Summary A composite convergent cross of 16 spring wheat parents produced a set of unselected progeny lines among which the major dwarfing genes, Rht1, Rht2 and Rht3, were distributed against a common random genetic background. Random subsets of these lines were grown under irrigation and optimal conditions in 4 experiments with replicated bordered plots in southern New South Wales in order to measure the dwarfing gene effect on yield potential. The dwarfing gene composition of each line was determined by test crossing and seedling responsiveness to gibberellic acid.Lodging was negligible in the two experiments in 1982. While present in the two in 1983, it was not strongly associated with yield. Grain yield levels were appropriately high (mean 5.9 t/ha). In all but 1 experiment the Rht1+Rht2 dwarf genotypes gave highest yields while the Rht3 group yielded on average 3% lower, Rht2 9% lower, Rht1 11% lower, and the non-dwarf or tall group yielded 24% lower. These yield differences were positively associated with harvest index, kernels per m² and kernels per spike, but negatively associated with mature plant height. Even within major dwarfing gene classes, grain yield was significantly and negatively associated with height.     

An assessment of the potential of 4DS.4DL-4s l L translocation lines as a means of eliminating tall off types in semi-dwarf wheat varieties

Summary Wheat varieties tend to be chromosomally unstable producing on average 2–3% of plants with abnormal chromosome numbers. A number of semi dwarf wheat varieties, carrying the gibberellic acid insensitive dwarfing genes Rht1 or Rht2, have been seen to produce distinct tall off types due to reduction in dosage of the chromosome carrying the dwarfing gene. The UK variety Brigand, carrying Rht2 on chromosome 4D, produced very distinct tall off types when this chromosome was reduced in dosage. The frequency of tall off types was sufficiently high to cause the variety to fail United Kingdom statutory uniformity tests. An attempt to prevent the loss of chromosome 4D was made by constructing translocation chromosomes involving the short arm of chromosome 4D, which carries Rht2, and the long arm of chromosome 4S ^l from Aegilops sharonensis, which carries a gene(s) conferring preferential transmission. The work in this paper describes the field evaluation of two lines carrying 4DS.4DL-4S ^l L translocations, and demonstrates their success in preventing spontaneously occurring monosomy of chromosome 4D in semi-dwarf wheats.     

Breeding for salinity resistance in mulberry (<Emphasis Type="Italic">Morus</Emphasis> spp.)

Late maturity α-amylase (LMA) is a genetic defect that is fairly widely spread in bread wheat (Triticum aestivum L.) germplasm, and recently detected in durum cultivars, which can result in unacceptably high α-amylase activity (low falling number) in ripe grain. LMA has also been observed at unexpectedly high frequency and severity in synthetic hexaploid wheats derived from the interspecific hybridisation of Triticum durum (AABB) and Aegilops tauschii (DD). Since synthetic hexaploids represent an important new source of resistances/tolerances to a range of biotic and abiotic stresses for wheat breeders, there is a pressing need to understand the mechanisms involved in LMA in synthetics and develop strategies for avoiding its adverse effects on grain quality. The objectives of this study were to firstly, compare the LMA phenotype of synthetics that varied for plant height, secondly, to characterise the LMA phenotype in groups of synthetics derived from the same durum parents and finally to determine whether LMA in primary synthetics is associated with the QTL previously reported in conventional bread wheat. More than 250 synthetic hexaploids, a range of durum cultivars and a doubled haploid population derived from Worrakatta (non-LMA) × AUS29663 (high LMA synthetic) were phenotyped and genotyped with markers reported to be linked to LMA in conventional bread wheat and markers diagnostic for the semi-dwarfing gene, Rht1. More than 85% of synthetics were prone to LMA, approximately 60% ranked as very high. Genetic control of LMA in synthetic hexaploids appeared to involve QTL located on 7B, and to a lesser extent 3B, similar to bread wheats. However, the LMA phenotype of many synthetic hexaploids appeared to be more extreme than could be explained by comparisons with bread wheat even taking into account the apparent absence of Rht1 in most genotypes. Other mechanisms, possibly triggered by the interaction between the AABB and DD genomes cannot be excluded. The presence of wild type rht1 in most synthetic hexaploids and their extreme height is difficult to reconcile with the semi-dwarf, Rht1, stature of many of the durums used in the interspecific hybridisation process. Mechanisms that could explain this observation remain unclear.     

Effects of dwarfing genes on yield and yield components under irrigated and rainfed conditions in wheat (Triticum aestivum L.)

Summary Near-isogenic tall (no dwarfing gene), semidwarf (Rht1 or Rht2) and dwarf (Rht1 + Rht2 or Rht3) spring wheat lines were evaluated for yield and yield components under irrigated and rainfed conditions. Under irrigated conditions, the dwarf and the semidwarf lines exhibited a significant yield advantage over the tall lines. Under rainfed conditions, the semidwarf lines outyielded the tall as well as the dwarf lines. Percent yield reduction in response to drought stress was highest with the dwarfs and lowest with the tall lines. Dry matter production of the tall lines and that of the semidwarf lines did not differ significantly and both produced significantly more dry matter than the dwarf lines under irrigated as well as rainfed conditions. Plant height and kernel weight decreased with increasing degree of dwarfness while number of kernels per spikelet, harvest index and days to heading increased under both moisture regimes. The dwarfing genes did not have any significant influence on number of tillers/m² and spikelets per spike in either moisture regime.     

Grain yield and other traits of tall and dwarf isolines of modern bread and durum wheats

Near-isogenic Rht lines of ten modern bread wheat (Triticumaestivum L.) and six durum wheat (T. turgidum L.) cultivars weredeveloped and evaluated in replicated trials under three soil moisturetreatments for two years in northwestern Mexico. The three soil moisturetreatments were created by providing one, two or six irrigations during eachcrop season. Grain yield and other traits were measured for each line ineach trial. Mean grain yields of short and tall T. aestivum or T.turgidum isolines were similar in the lowest yielding environment whenmean grain yields (0% grain moisture) of T. aestivum and T.turgidum were 2,232 and 1,870 kg ha^-1, respectively. Mean grainyield of dwarf T. aestivum was significantly higher than that of tallgenotypes in another five trials with moderate to high yields. Theperformance of dwarf and tall T. turgidum isolines was unpredictablein moderate yielding trials, and the dwarf isolines yielded significantly morein trials that received six irrigations. Given that the tall isolines producedsignificantly more straw than their shorter counterparts, cultivation of tallwheats may be beneficial in semiarid environments where farmers' yields areclose to 2.5 t ha^-1 or lower, and straw has value.     

A new source of cytoplasmic male sterility in sunflower

Summary Interspecific substitutions of the nucleus of Helianthus annuus (2n=34) cv. Saturn into the cytoplasm of H. petiolaris (2n=34) by successive backcrossing, resulted in progenies with indehiscent anthers containing white, rather than normal yellow, pollen. Further backcrossing by cv. Saturn failed to restore pollen shed, suggesting that the male sterility was cytoplasmic. In vivo germination tests of pollen from 23 such plants from eight BC₅ lines, indicated complete pollen sterility for 14 plants, but normal seed set, suggesting that female fertility was not affected. Meiosis in all plants examined was normal.Crosses between seven sources of pollen-fertility restorer, one collection of wild H. annuus, and an existing source of cytoplasmic male sterility, resulted in a high frequency of plants with normal pollen shed in all F₁ progenies. However, no normal pollen shed was evident in F₁ progenies for similar crosses between BC₅ male-steriles and three of the seven restorer sources, nor for the single wild H. annuus evaluated. The foregoing suggests that the backcross substitution lines are a new source of cytoplasmic male sterility. The inheritance of restoration of pollen shed was complex and not fully elucidated. Some data suggested that two independent, complementary, dominant genes were required, but others indicated two to three independent, dominant genes.     

Reduced height (Rht) and photoperiod insensitivity (Ppd) allele associations with establishment and early growth of wheat in contrasting production systems

Near isogenic lines (NILs) varying for genes for reduced height (Rht) and photoperiod insensitivity (Ppd-D1a) in a cv. Mercia background (rht (tall), Rht-B1b, Rht-D1b, Rht-B1c, Rht8c + Ppd-D1a, Rht-D1c, Rht12) were compared at one field site but within contrasting (‘organic’ vs. ‘conventional’) rotational and agronomic contexts, in each of 3 years. In the final year, further NILs (rht (tall), Rht-B1b, Rht-D1b, Rht-B1c, Rht-B1b + Rht-D1b, Rht-D1b + Rht-B1c) in both Maris Huntsman and Maris Widgeon backgrounds were added together with 64 lines of a doubled haploid (DH) population [Savannah (Rht-D1b) × Renesansa (Rht-8c + Ppd-D1a)]. Assessments included laboratory tests of germination and coleoptile length, and various field measurements of crop growth between emergence and pre jointing [plant population, tillering, leaf length, ground cover (GC), interception of photosynthetically active radiation (PAR), crop dry matter (DM) and nitrogen accumulation (N), far red: red reflectance ratio (FR:R), crop height, and weed dry matter]. All of the dwarfing alleles except Rht12 in the Mercia background and Rht8c in the DHs were associated with reduced coleoptile length. Most of the dwarfing alleles (depending on background) reduced seed viability. Severe dwarfing alleles (Rht-B1c, Rht-D1c and Rht12) were routinely associated with fewer plant numbers and reduced early crop growth (GC, PAR, DM, N, FR:R), and in 1 year, increased weed DM. In the Mercia background and the DHs the semi-dwarfing allele Rht-D1b was also sometimes associated with reductions in early crop growth; no such negative effects were associated with the marker for Rht8c. When significant interactions between cropping system and genotype did occur it was because differences between lines were more exaggerated in the organic system than in the conventional system. Ppd-D1a was associated positively with plant numbers surviving the winter and early crop growth (GC, FR:R, DM, N, PAR, height), and was the most significant locus in a QTL analysis. We conclude that, within these environmental and system contexts, genes moderating development are likely to be more important in influencing early resource capture than using Rht8c as an alternative semi-dwarfing gene to Rht-D1b.     

Aneuploidy in semi dwarf wheat varieties

Summary Tall varietal impurities occurring in a number of new semi-dwarf winters wheats carrying the Norin 10 dwarfing genes Rht1 or Rht2 are causing problems at seed certification. Cytological analysis of such impurities from three varieties shows they are aneuploids and are mainly monosomic (2n=41) for chromosomes carrying semi-dwarfing genes. Because Rht1 and Rht2 act as suppressors of height, their reduced dosage as in monosomics, produces plants considerably taller than in the euploid condition.     

NORIN 10 semi-dwarfism in tetraploid wheat and associated effects on yield

Summary A genetic study of a range of NORIN 10 based semi-dwarf durum wheats showed that only Gai/Rht 1, located on chromosome 4A, was present. No varieties carrying a second Gai/Rht allele were identified and deliberate attempts to introduce Gai/Rht2 into tetraploid wheats have so far been unsuccessful.In a spaced plant trial of homozygous random F₃ lines from two tall x semi-dwarf crosses, the semi-dwarfs has lower ear yields, due mainly to reduced kernel weight, but had higher tiller numbers than the tall genotypes. Although there was no difference in overall plant yield between talls and semi-dwarfs, an analysis of character associations within the semi-dwarf F₃'s showed positive height-yield and height-kernel weight correlations indicating that selection for tall dwarfs may be a useful breeding strategy in tetraploid wheats.     

Distribution of the Rht-B1b, Rht-D1b and Rht8 reduced height genes in autumn-sown Chinese wheats detected by molecular markers

Reduction of plant height has played a significant role in improving wheat production and knowledge of dwarfing genes in Chinese wheat will be very important for developing high yielding cultivars. Molecular markers were used to detect the presence of genes Rht-B1b (Rht1), Rht-D1b (Rht2) and Rht8 in 220 wheat genotypes from autumn-sown wheat regions in China. They include landmark landraces, leading cultivars and core parents involved in wheat breeding from the 1950s to the present. Results indicated that Rht-D1b and Rht8 dominate with frequencies of 45.5% and 46.8%, respectively, followed by Rht-B1b with a frequency of 24.5%. The frequencies of Rht-B1b and Rht-D1b increased, from 8.6 to 32.2% and 36.2 to 53.4%, respectively, whereas the frequency of Rht8 has remained constant over time, when compared with cultivars released before and after 1990. This indicates that both the Rht-B1b and Rht-D1b were successfully used in wheat production in Chinese environments. Our study shows that Rht-B1b and Rht-D1b can be used in the post-anthesis heat stressed environments. Rht-B1b in Chinese wheats is derived from two sources, viz., Norin 10 and the Italian introduction St2422/464 (Rht-B1b and Rht8). The identity of Rht-B1b in these two sources still needs to be confirmed. Suwon 86 carrying both Rht-B1b and Rht-D1b, and Chinese cultivars, Huixianhong and Yaobaomai, are the primary sources of Rht-D1b in Chinese wheats. It is likely that Rht-D1b in Youbaomai derives from an unknown introduction. Italian introductions such as Funo and Abbondanza, and Lovrin 10 with the 1B/1R translocation, and Chinese landraces are the three major sources of Rht8. This information will be very valuable for wheat breeding in China, and internationally.     

Reduced height genes and their importance in winter wheat cultivars grown in southern Russia

Reduced height genes are the genetic basis of the “green revolution”. Two agronomically important gibberellic acid (GA)-insensitive genes, Rht-B1b (Rht1) and Rht-D1b (Rht2), localised on chromosomes 4BS and 4DS, respectively, and the GA-responsive gene Rht8, localised on chromosome 2DS, were introduced into many cultivars worldwide. An alternative GA-insensitive gene Rht-B1e (=Rht11) was introduced into Russian wheat cultivars. In this study, we investigated the importance of Rht-B1b, Rht-B1e, Rht-D1b and Rht8 in south Russian bread wheat cultivars. The cultivars were divided into five groups: (1) Rht8c; (2) Rht-B1b; (3) Rht-B1b, Rht8; (4) Rht-B1e, Rht8; and (5) Rht-D1b, Rht8. In the Krasnodar region of south Russia 3,222,321 ha were evaluated for estimating the commercial value of each of these genes in 2009–2011. The results showed that coupling Rht-B1e with Rht8 or Rht-B1b with Rht8 was more successful compared with the effects of other genes or their combinations. The average yield of cultivars carrying Rht-B1e exceeded the average yield of cultivars from the other groups. Our study demonstrates that Rht-B1e can be recommended for use in breeding programs and the presence of a molecular marker for this allele simplifies its transfer to elite wheat germplasm.     

Molecular mapping of S-c, an F1 pollen sterility gene in cultivated rice

Hybrids between indica and japonica rice varieties usually show partial sterility, and are a major limiting factor in the utilization of heterosis at subspecific level. When studying male-gamete (pollen) abortion, a possibly important cause for sterility, six loci (S-a, S-b, S-c, S-d, S-e and S-f) for F₁ pollen sterility were identified. Here we report genetic and linkage analysis of S-c locus using molecular markers in a cross between Taichung 65, a japonica variety carrying allele S-c ^j, and its isogenic line TISL5, carrying alleleS-c ^j. Our results show that pollen sterility occurring in the hybrids is controlled by one locus. We used 208 RFLP markers, as well as 500 RAPD primers, to survey the polymorphism between Taichung 65 and TISL5. Six RFLP markers located on a small region of chromosome 3, detected different RFLP patterns. Co-segregation analysis of fertility and RFLP patterns with 123 F₂ plants confirmed that the markers RG227, RG391, R1420 were completely linked with the S-c locus. The genetic distances between the markers C730, RG166 and RG369 and the S-c locus were 0.5 cM, 3.4 cM, and 3.4 cM respectively. Distorted F₂ ratios were also observed for these 4 RFLP markers in the cross. This result suggests that the `one locus sporo-gametophytic' model could explain F₁ hybrid pollen sterility in cultivated rice. RG227, the completely linked marker, has been converted to STS marker for marker-assisted selection. This revised version was published online in August 2006 with corrections to the Cover Date.     

Wheat Rht‐B1 Dwarfs Exhibit Better Photosynthetic Response to Water Deficit at Seedling Stage Compared to the Wild Type

Wheat reduced height (Rht) genes encode modified DELLA proteins, which are gibberellin insensitive, accumulate under stress, restrain growth and affect plant stress response. The seedling reaction to soil water deficit regarding leaf gas exchange and chlorophyll fluorescence was compared in near‐isogenic lines carrying the alleles Rht‐B1a (tall), Rht‐B1b (semi‐dwarfing) and Rht‐B1c (dwarfing) and was related to leaf water content and anatomy. Under drought, Rht‐B1c line was characterized by less decreased CO₂ assimilation, delayed non‐stomatal limitation of photosynthesis and higher instantaneous water use efficiency. The functional state of its photosynthetic apparatus was better preserved as evidenced by the less decreased actual quantum yield (Φ_PSII) and potential maximum quantum yield (F_v/F_m) of PSII, and the less increased quantum yield of non‐regulated energy dissipation (Φ_NO). Rht‐B1b line also tended to perform better than Rht‐B1a, but differences were less pronounced. Although the leaves of both dwarf lines were smaller, thicker and more pubescent, their water content was not higher in comparison with the tall line. Nevertheless, in Rht‐B1c, leaf thickness was less decreased and mesophyll cells were less shrunk under drought. The more effective performance of the photosynthetic machinery of dwarf lines under water deficit could be explained by a combination of morpho‐anatomical and metabolic characteristics.     

Barriers to hybridization of Solanum bulbocastanum Dun. and S. Verrucosum Schlechtd. and structural hybridity in their F1 plants

Summary Results of reciprocal crosses between Solanum verrucosum (2n=2x=24) and S. bulbocastanum (2n=2x=24) are described in terms of pollen tube behaviour in styles, of berry and seed set, of fertility and of meiotic behaviour of the F₁ hybrids. Pollen tube growth of S. verrucosum is strongly inhibited in styles of S. bulbocastanum, whereas no inhibition is observed in the reciprocal cross. Therefore S. bulbocastanum x S. verrucosum fails to set berries or seeds, whereas the reciprocal cross produces both berries (54.4% berry set) and seeds (0.3 per berry). Only 14.6% of the seeds germinate. Both the diploid and corresponding tetraploid hybrid plants are vigorous, flower abundantly, have a rather regular meiosis (mainly rod bivalents), but show a high degree of cytoplasmic-genic male sterility. Crossability of the diploid hybrid plants is nil when used as pollen parents and near to zero when used as pistillate parents. The barriers to hybridization of the parent species (unilateral inhibition of pollen tube growth, somatoplastic sterility, cytoplasmic-genic male sterility and structural differences of the parental chromosomes) are discussed and methods are suggested to overcome these barriers.     

Cytomorphological studies in an intergeneric hybrid between Gossypium hirsutum L. (2n=52) and Hibiscus panduraeformis Burm.

Summary An intergeneric hybrid (2n=38) between Gossypium hirsutum L. (2n=52) × Hibiscus panduraeformis Burm. (2n=24) was obtained by pollinating about 2000 flower buds of G. hirsutum var. Gregg Male Sterile with pollen from H. panduraeformis. The F₁ hybrid was intermediate in plant habit, but possessed gossypol glands and nectaries on the leaves, bolls containing seeds with fuzz and lint as dominant characters of G. hirsutum. Flowers with yellow corolla and anthers; purple petal spot, profuse growth of epidermal hairs on all plant parts including the boll sutures, and jassid tolerance were dominant characters of H. panduraeformis. The partial fertility of the F₁ indicated the possibilities of combining jassid and drought tolerance of H. panduraeformis with the desired economic characters of G. hirsutum for rainfed cultivation.The F₁ hybrid showed various meiotic irreguarities and about 40% pollen sterility. Formation of the normal bivalents occurred quite frequently suggesting a close relationship between the parental species. The sterility observed in the hybrid may be due to small structural differences between the chromosomes of the two genera and meiotic abnormalities.     

Molecular Mapping of a Pollen Killer Gene S29(t) in Oryza Glaberrima and Co-Linear Analysis with S22 in O. Glumaepatula

Two species in genus Oryza, O. glaberrima and O. glumaepatula, are valuable and potential sources of useful genes of interest for rice improvement. However, the hybrid sterility between O. sativa and these two species is a main reproduction barrier when transferring the favorable traits/genes to mbox{O. sativa.} To overcome it, the nature of hybrid sterility should be understood further. The objective in the report is to map a new hybrid sterility gene as a Mendelian factor from O. glaberrima and analyze the co-linear of hybrid sterility S loci mbox{between} mbox{O. glaberrima} and mbox{O. glumaepatula} via comparative mapping approach. A BC₂F₂ population, derived from a single semi-sterility plant of BC₂F₁ of WAB56-104/ WAB450-11-1-2-P41-HB (WAB450-6) //WAB56-104///WAB56-104 was employed to map this pollen killer in O. glaberrima since WAB450-6 is a progeny of interspecific hybrid between O. sativa and O. glaberrima. A new pollen killer locus, S29(t) in O. glaberrima, was identified and mapped to interval between SSR marker RM7033 (1.1 cM) and RM7562 (1.3 cM) on rice chromosome 2. Comparative mapping indicated that S29(t) closely corresponded to S22 which is also a pollen killer gene in O. glumaepatula and is tightly linked with RFLP marker S910 on the short arm of rice chromosome 2. The good co-linear between S29(t) and S22 implied that there might exist common (orthologous) hybrid sterility loci controlled the reproduction barrier among AA genome species of genus Oryza, which will contribute significantly to our understanding of speciation and operation of hybrid sterility between O. sativa and its AA genome relatives.