Phospholipid fatty acid profiles as indicators for the microbial community structure in soils along a climatic transect in the Judean Desert

 Analyses of phospholipid fatty acids (PLFAs) were used to assess variations in soil microbial biodiversity, community structure and biomass, and consequently, the soil microbial successions in time along the climate gradient of the Judean Desert. Principal component analysis of the PLFA data revealed that the degree of time- and space-related variations in PLFA composition and microbial community structure was high among the desert habitats. Significant shifts of specific groups of fatty acids caused by climatic variations were observed. The biomass represented by the total amounts of PLFAs indicated that the greater the average amount of precipitation, the higher the biomass. The results indicate that at least three different microorganism strategies were probably followed: (1) in soils with a high biomass during the rainy period, a significant biomass decrease occurred during the dry period, mainly due to an extraordinary decrease of Gram-negative bacteria as indicated by the decrease of typical monounsaturated fatty acids and hydroxy-substituted phospholipid fatty acids in semi-arid climates; (2) in soils with low biomass content during the rainy period, a significant increase of biomass during the dry period occurred, due mainly to the increase of eukaryotes, Gram-positive, and Gram-negative bacteria characterized by polyunsaturated, branched chain and some of the monounsaturated fatty acids, respectively; and (3) relatively low and constant biomass during the entire observation period in the more arid zones of the Judean Desert. Received: 12 January 1998     

Testate amoebae (protista) of an elevational gradient in the tropical mountain rain forest of Ecuador

We investigated the species composition of testate amoebae at three altitudes (1000, 2000 and 3000 m) and two horizons (L and F/H/Ah) of a tropical mountain rain forest in southern Ecuador. A total of 135 species and intraspecific taxa of testate amoebae were found (36 samples). Rarefaction plots suggest that only few more species are to be expected. Species number in the L horizon was at a maximum at 2000 m (109 species) and similar at 1000 and 3000 m (75 and 71 species, respectively). Species numbers in the F/H/Ah horizon were 29, 67 and 48 at 1000, 2000 and 3000 m, respectively. The density of testate amoebae in the L horizon increased significantly in the order 1000<3000<2000 m with 3147±129, 9198±144 and 12,497±1317 ind. g⁻¹ dry matter and in the F/H/Ah horizon with 176±25, 3118±97 and 4986±102 ind. g⁻¹ dry matter, respectively. The significant Horizon×Elevation interaction reflects the exceptionally low abundance of testate amoebae in the Ah horizon at 1000 m. The results suggest that species richness of testate amoebae does not decrease continuously with elevation; rather, it peaks at an intermediate elevation. Further, the data suggest that diversity, but not density of testate amoebae in tropical forests exceeds that in temperate forests. Morphological features of testate amoebae reflected semiaquatic habitat conditions. The great majority of testate amoebae species of the studied tropical mountain rain forests are geographically widespread, including temperate regions; however 9 of the species (i.e. 6.7%) are considered tropical, some of these species likely represent Gondwana relicts.     

Changes in the microbial activity of an arid soil amended with urban organic wastes

Changes produced in the biological characteristics of an arid soil by the addition of various urban wastes (municipal solid waste, sewage sludge and compost) at different doses, were evaluated during a 360-day incubation experiment. The addition of organic materials to the soil increased the values of biomass carbon, basal respiration, biomass C/total organic C ratio and metabolic quotient (qCO₂), indicating the activation of soil microorganisms. These biological parameters showed a decreasing tendency with time. Nevertheless, their values in amended soils were higher than in control soil, which clearly indicates the improvement of soil biological quality brought about by the organic amendment. This favorable effect on soil biological activity was more noticeable with the addition of fresh wastes (municipal solid waste or sewage sludge) than with compost. In turn, this effect was more permanent when the soil was amended with municipal solid waste than when it was amended with sewage sludge. Received: 28 May 1996     

Soil microbial community characteristics along an elevation gradient in the Laguna Mountains of Southern California

We sampled soil at four sites in the Laguna Mountains in the western Sonoran Desert to test the effects of site and sample location (between or beneath plants) on fatty acid methyl ester (FAME) and carbon substrate ulilization (Biolog) profiles. The four sites differed in elevation, soil type, plant community composition, and plant percent cover. Soil pH decreased and plant density increased with elevation. Fertile islands, defined as areas beneath plants with greater soil resources than bare areas, are present at all sites, but are most pronounced at lower elevations. Consistent with this pattern, fertile islands had the greatest influence on FAME and Biolog profiles at lower elevations. Based on the use of FAME biomarker and principal components analyses, we found that soil microbial communities between plants at the lowest elevation had proportionally more Gram-negative bacteria than all other soils. At the higher elevation sites there were few differences in FAME profiles of soils sampled between vs. beneath plants. Differences in FAME profiles under plants among the four sites were small, suggesting that the plant influence per se is more important than plant type in controlling FAME profiles. Since microbial biomass carbon was correlated with FAME number (r=0.85,P<0.0001) and with FAME named (r=0.88,P<0.0001) and total areas (r=0.84,P<0.0001), we standardized the FAME data to ensure that differences in FAME profiles among samples were not the result of differences in microbial biomass. Differences in microbial substrate utilization profiles among sampling locations were greatest between samples taken under vs. between plants at the two lower elevation sites. Microbial substrate utilization profiles, therefore, also seem to be influenced more by the presence of plants than by specific plant type.     

Changes in the community composition and trophic structure of microarthropods in sporocarps of the wood decaying fungus Fomitopsis pinicola along an altitudinal gradient

Soil microarthropods colonize a wide range of habitats including microhabitats such as earthworm burrows, ant nests, tree trunks, moss mats and wood decaying fungi. While many of these microhabitats have been investigated intensively, the role of wood decaying fungi as a habitat and food resource for microarthropods found little attention. We investigated the density, community structure, reproductive mode and trophic structure of microarthropods, in particular oribatid mites, in the wood decaying fungus Fomitopsis pinicola (Schwarts: Fr) Karst. along an altitudinal gradient in Germany spanning from 350 m to 1160 m. Microarthropods were extracted from sporocarps, and stable isotope ratios (¹⁵N/¹⁴N; ¹³C/¹²C) of the fungus and the microarthropods were measured. Densities of most microarthropod taxa were highest at lower altitudes and decreased with increasing altitude. Oribatid mites were the dominant animal taxon. Their community structure gradually changed with altitude. Stable isotope ratios indicated that oribatid mite and other arthropod species occupy distinct trophic niches but most do not feed on F. pinicola. Notably, species of the same genus, e.g. Carabodes, occupied different trophic niches. Most oribatid mite species in F. pinicola reproduced sexually which is similar to the bark of trees but in contrast to the soil where most species reproduce via parthenogenesis. The findings indicate that (1) at high altitudes microarthropod density in fungal fruiting bodies is limited by low temperatures reducing animal metabolism and reproduction, and this also affects oribatid mite community structure, (2) despite the uniform habitat trophic niches of oribatid mite species differ and this also applies to morphologically similar species of the same genus, and (3) feeding on F. pinicola or associated resources facilitates the dominance of sexual reproducing species.