Stationary performance testing of stallions from the Dutch Warmblood riding horse population. 2. Estimated heritabilities of and correlations between successive judgements of performance traits

The length of test period of stationary performance testing (SPT) of stallions of the Dutch Warmblood riding horse population is evaluated. Heritability of successive judgements of traits and the phenotypic and genetic relations between successive judgements are estimated.Data from 1983–1988 are used, covering scores from 206 mostly 3-year-old stallions. Ten subjectively scored traits are considered: walk, trot, canter, riding ability, jumping ability, free jumping, cross country, character, stable behaviour, training report. Traits are successively scored at about 25, 50, 80 and 100 days in SPT. Missing scores are predicted on basis of the available scores using multiple partial regression coefficients. Validity of this method is checked in an independent data set for walk, trot and canter. The correlations between predicted and realized scores average 0.74, 0.77 and 0.79 when first, first and second, and first, second and third judgements are available, respectively.Variance and covariance components are estimated by restricted maximum likelihood (REML) procedures. Data from SPT are analysed using an animal model. Estimates of heritability are high and constant for gaits during the successive judgements. Except for stable behaviour estimates of heritability, the traits decrease slightly during the successive judgements. Estimates of the phenotypic and genetic correlations between successive judgements are high. It is concluded that length of SPT can be shortened and selection during SPT can be intensified.     

Analysis of competition performance in dressage and show jumping of Dutch Warmblood horses

Most Warmblood horse studbooks aim to improve the performance in dressage and show jumping. The Dutch Royal Warmblood Studbook (KWPN) includes the highest score achieved in competition by a horse to evaluate its genetic ability of performance. However, the records collected during competition are associated with some aspects that might affect the quality of the genetic evaluation based on these records. These aspects include the influence of rider, censoring and preselection of the data. The aim of this study was to quantify the impact of rider effect, censoring and preselection on the genetic analysis of competition data of dressage and show jumping of KWPN. Different models including rider effect were evaluated. To assess the impact of censoring, genetic parameters were estimated in data sets that differed in the degree of censoring. The effect of preselection on variance components was analysed by defining a binary trait (sport‐status) depending on whether the horse has a competition record or not. This trait was included in a bivariate model with the competition trait and used all horses registered by KWPN since 1984. Results showed that performance in competition for dressage and show jumping is a heritable trait (h² ~ 0.11–0.13) and that it is important to account for the effect of rider in the genetic analysis. Censoring had a small effect on the genetic parameter for highest performance achieved by the horse. A moderate heritability obtained for sport‐status indicates that preselection has a genetic basis, but the effect on genetic parameters was relatively small.     

Genetic relations of movement and free-jumping traits with dressage and show-jumping performance in competition of Dutch Warmblood horses

Genetic parameters for traits evaluated at the studbook entry inspection and genetic correlations with dressage and show-jumping performance in competition were estimated. Data comprised 36,649 Warmblood horses that entered the studbook between 1992 and 2002. The genetic analyses were performed using univariate and bivariate animal models. Heritabilities of the studbook entry traits were estimated in the range 0.15–0.40. The movement traits showed moderate to strong mutual genetic correlations, whereas the genetic correlations of movement traits with free-jumping traits were weak to moderate. The free-jumping traits showed strong to very strong mutual genetic correlations.

Competition results of 33,459 horses with performance in dressage and 30,474 horse with performance in show-jumping were linked to the studbook entry data to estimate the genetic relationship with performance in competition. Heritability estimates for dressage and show jumping were 0.14. Genetic correlations of the movement traits with dressage were moderate to strong, and with show-jumping weak to moderate. Genetic correlations of the free-jumping traits with dressage were weak to moderate and unfavourable. The free-jumping traits were genetically strong to very strong correlated to show-jumping. It was concluded that a selection of the traits evaluated at the studbook entry inspection will favourably contribute to estimation of breeding values for sport performance.     

Genetic correlations between performance traits and radiographic findings in the limbs of German Warmblood riding horses

Results of mare performance tests in the field (MPT-F) of 10,949 mares, mare performance tests at station (MPT-S) of 1,712 mares, and inspections of horses intended for sale at riding horse auctions (AU) of 4,772 horses were used to investigate genetic correlations between corresponding performance traits. Mare performance tests were held in 1995 to 2004 and auction inspections in 1999 to 2004. Scores on a scale from 0 to 10 were given for gaits under rider (walk, trot, canter), rideability (evaluated by judging commission and test rider), free-jumping (ability, style, total), and character. Radiography results of 5,102 Hanoverian Warmblood horses were used to investigate genetic correlations between performance traits and particular radiographic findings. The radiographic findings included osseous fragments in fetlock and hock joints, deforming arthropathy in hock joints, and distinct radiographic findings in the navicular bones, which were analyzed as binary traits, and radiographic appearance of the navicular bones, which was analyzed as a quasi-linear trait. Genetic parameters were estimated multivariately in linear animal models with REML using information on the horses radiographed and their contemporaries (n = 18,609). Heritability of performance traits ranged between 0.14 and 0.61, and heritability of radiographic findings between 0.14 and 0.33. Additive genetic correlations between corresponding performance traits were close to unity for MPT-F and MPT-S, ranged from 0.81 to 0.90 for MPT-F and AU, and were 0.75 to 0.92 for MPT-S and AU. Genetic correlations between performance and radiography results were mostly close to zero. Indications of negative additive genetic correlations were observed for deforming arthropathy in hock joints and canter, rideability evaluated by test rider, jumping traits and character, and osseous fragments in hock joints and character. Selection of horses for radiological health of their limbs will assist further genetic improvement of the performance of young Warm-blood riding horses.     

Estimation of genetic parameters and prediction of breeding values for multivariate threshold and continuous data in a simulated horse population using Gibbs sampling and residual maximum likelihood

Simulated horse data were used to compare multivariate estimation of genetic parameters and prediction of breeding values (BV) for categorical, continuous and molecular genetic data using linear animal models via residual maximum likelihood (REML) and best linear unbiased prediction (BLUP) and mixed linear-threshold animal models via Gibbs sampling (GS). Simulation included additive genetic values, residuals and fixed effects for one continuous trait, liabilities of four binary traits, and quantitative trait locus (QTL) effects and genetic markers with different recombination rates and polymorphism information content for one of the liabilities. Analysed data sets differed in the number of animals with trait records and availability of genetic marker information. Consideration of genetic marker information in the model resulted in marked overestimation of the heritability of the QTL trait. If information on 10,000 or 5,000 animals was used, bias of heritabilities and additive genetic correlations was mostly smaller, correlation between true and predicted BV was always higher and identification of genetically superior and inferior animals was - with regard to the moderately heritable traits, in many cases - more reliable with GS than with REML/BLUP. If information on only 1,000 animals was used, neither GS nor REML/BLUP produced genetic parameter estimates with relative bias 50% for all traits. Selection decisions for binary traits should rather be based on GS than on REML/BLUP breeding values.     

Pedigree analysis in the Austrian Noriker draught horse: genetic diversity and the impact of breeding for coat colour on population structure

The pedigree of the current Austrian Noriker draught horse population comprising 2808 horses was traced back to the animals considered as founders of this breed. In total, the number of founders was 1991, the maximum pedigree length was 31 generations, with an average of 12.3 complete generations. Population structure in this autochthonous Austrian draught horse breed is defined by seven breeding regions (Carinthia, Lower Austria, Salzburg, Styria, Tyrol, Upper Austria and Vorarlberg) or through six coat colour groups (Bay, Black, Chestnut, Roan, Leopard, Tobiano). Average inbreeding coefficients within the breeding regions ranged from 4.5% to 5.5%; for the colour groups, the coefficients varied from 3.5% to 5.9%. Other measures of genetic variability like the effective number of founders, ancestors and founder genomes revealed a slightly different genetic background of the subpopulations. Average coancestries between and within breeding areas showed that the Salzburg population may be considered as the nucleus or original stock whereas all other subpopulations showed high relationship to horses from Salzburg. The target of draught horse breeding in the 21st century does not meet the breeding concept of maximizing genetic gains any more. Stabilizing selection takes place. In this study, we show that demographic factors as well as structure given by different coat colours helped to maintain genetic diversity in this endangered horse breed.     

Horse breeding: genetic tests for the coat colors chestnut,bay and black. Results from a preliminary study in the Swiss Freiberger horse breed

Coat color played an important role during domestication and formation of breeds. Livestock breeders often had special preferences for particular color phenotypes because they believed them to be associated with performance or fitness traits. Socio-cultural reasons might have had an influence on color selection as well. Recently genetic tests on DNA level got available to genotype in any individual horse for basic horse coat colors (chestnut, bay, black). In particular, hidden carriers of the recessive chestnut and black allele are recognizable with these tests. A sample of 162 Franches-Montagnes horses from Switzerland was genotyped for the alleles for chestnut and black. The analysis of allele frequencies revealed a high prevalence of the chestnut allele and a low frequency of the black allele in this population. Rare colors are in demand on the market. The statistical analysis of 1369 offspring from five stallions indicate, that darker shades of basic color phenotypes (dark chestnut, dark bay) follow a recessive mode of inheritance in the Franches-Montagnes horse breed.     

荻和南荻杂交种F1群体主要农艺性状的杂种优势、遗传及相关性分析

利用主要农艺性状上具有显著差异的荻和南荻为亲本,杂交得到种间杂交种F₁群体(232个单株)为试验材料,对荻和南荻杂交种茎节数、叶片长、叶宽、主茎长、花茎长、花序长、株高、基部茎径、平均单分蘖干重、最大分蘖干重、分蘖数和单株重等12个主要农艺性状的杂种优势进行了度量,采用主基因+多基因混合遗传模型对F₁杂交群体的12个主要农艺性状进行遗传和相关性分析。结果表明,在F₁分离群体中12个主要农艺性状呈连续的、单峰、偏态分布,说明这些性状为多基因控制的数量性状。除基部茎径外的其他11个农艺性状都有较大的中亲优势,其中单株重、平均单分蘖干重、花序长、主茎长、株高、最大分蘖干重具有显著的超高亲优势,说明杂种优势可以作为荻和南荻育种的主要方法。混合遗传分析表明,花茎长、最大茎重能检测到1对主基因,叶片宽、主茎长、株高、分蘖数、单茎均重、单株重能检测到2对主基因的存在,主基因遗传率大小顺序为叶片宽(87.76%)>单株重(81.48%)>单茎均重(65.12%)>分蘖数(59.20%)>主茎长(49.87%)>株高(48.01%)>花茎长(47.75%)>分蘖最大茎重(37.19%)。产量相关性状中的单株重、单茎均重和分蘖数具有较高的主基因遗传率,适合于早期世代选择。这12个农艺性状间存在一定的相关性,多数性状间的相关性为极显著的正相关,其中单株重与分蘖数、单茎均重、主茎长和株高的相关系数最大,在育种实践中可以利用相关性状进行间接选择。     

Genetic evaluation of length of productive life in the Spanish Holstein-Friesian population. Model validation and genetic parameters estimation

Functional longevity (FL), measured as length of productive life (LPL) adjusted by production level, has been regarded as an important trait to measure the global functional aptitude of a cow, particularly when direct measures of the functional traits (health and reproductive performance) are not available. The objective of this study was to analyze the trait FL making use of survival analysis techniques in order to propose a model for the genetic evaluation of this trait in the Spanish Holstein Friesian population. The data set consisted of 133,629 registered cows of three regions; Andalusia, Basque Country and Catalonia. The hazard function was described as the product of a baseline hazard function and the time-independent effects of age at first calving, lactation number-stage of lactation, annual change in herd size, milk, fat and protein yield. Sire and maternal grandsire and herd-year-season of calving were considered as random effects. Percentage of right-censored data ranged from 41.9% to 52.7% for the analysed data sets. All the effects analyzed were significant (P < 0.0001) and had a great influence on the risk of culling of a cow, except for the age at first calving which showed a relatively small effect. Higher risk for factors such as age at first calving, change in herd size and relative level of milk production was associated with the more extreme classes. The consistency of the results among regional samples which represent diverse production systems in the population indicated that the proposed model could be applied at the national level. The relatively low heritability (0.048 to 0.074) suggests that genetic improvement of LPL could be effective if the direct evaluation is combined with indirect measures of LPL.