Isozyme variation in taro (Colocasia esculenta (L.) Schott) from Asia and Oceania

Summary Isozyme variation was studied in 1,417 cultivars and wild forms of taro collected in Asia and Oceania. Seven polymorphic enzyme systems (MDH, IDH, PGI, 6-PGD, ME, SkDH, and ADH) revealed 143 isozyme phenotypes, or zymotypes, each uniquely characterized by the presence or absence of 56 electromorphs. Results showed greater isozyme variation in Asia than in Oceania, with Indonesia being the area of greatest diversity. No correlations were found between zymotypes and morphotypes or ploidy levels (as described by other investigators). Multivariate analyses of the isozyme data indicated that the majority of the Indonesian cultivars were different from the Philippine and Oceanian taro cultivars. Oceanian cultivars constituted a continuum of clusters and are thought to have originated from a narrow genetic base introduced from Indonesia. If taro breeding is to have any future in Oceania, it is important to exchange genotypes to broaden the base of existing breeding programmes.     

Colocasia esculenta (L.) Schott,Colocasia antiquorum Schott,how many species? 1. A preliminary investigation

Summary The taxonomy of edible Colocasia (Cocoyam) is confusing. The existence of one species, C. esculenta var. antiquorum or C. esculenta and C. antiquorum as two separate species is controversial. Nine high yielding Nigerian cultivars of cocoyam made up of members of the two taxa were grown under the same environmental conditions. As a preliminary investigation, 17 characters were monitored and recorded to help in the classification of the cultivars. Results showed that cocoyams can be grouped into two separate species. The qualities possessed by TCe 23, Nwine and Ukpon cultivars which include pink tuber skin, long or club shaped cormels and non-irritation in the throat when boiled and eaten, clearly distinguished them from those of Tce 15, 19, 27, 36, Ede-ofe and Kochuom.     

The relationship between geographic distribution and ploidy level of taro,Colocasia esculenta

Summary The distribution of diploid and triploid domesticated and wild taro was investigated. It was found that going from south to north the frequency of diploid accession decreased, while that of triploids increased.     

Geographical differentiation of Asian taro, Colacasia esculenta (L.) Schott, detected by RAPD and isozyme analyses

Geographical differentiation and phylogenetic relationships of Asian taros, Colocasia esculenta (L.) Schott, and related species were analyzed by random amplified polymorphic DNA (RAPD) and isozymes of 13 enzyme systems with special interest in the accessions from the Yunnan area of China, which supposedly has served the secondary center of taro diversification and dispersal into the temperate Far East Asia. The RAPD analysis was found to be better suited for detecting genetic differences within taros and among its related species. However, both RAPD and isozyme analyses estimated quite similar genetic relationships within taros and between related species. Genetic differentiation was evident in the taro accessions of Nepal, Yunnan and other Asian areas; but, phylogenetic relationships between the differentiated taro groups were not clearly determined. When taro cultivation was introduced to a new area, only a small fraction of genetic variability in heterogeneous taro populations was transferred possibly causing random differentiation among locally adapted taro populations. Some of the Yunnan and Japanese accessions were found to be direct descendants of the common triploid population. Further analysis on taros from the eastern China and Korea is necessary to clarify the Yunnan's role in taro diversification and dispersal. The significant local differentiation in Asian taros was clearly demonstrated by RAPD and isozyme analyses in this study, and the results of this study will serve as a base to establish evolutionary and genetic relationships among Asian taros. This revised version was published online in August 2006 with corrections to the Cover Date.     

Molecular characterization of taro (Colocasia esculenta) using RAPD markers

Forty-four taro (Colocasia esculenta), two tanier (Xanthosoma species) and one Colocasia gigantea accessions were evaluated for genetic diversity using random amplified polymorphic DNA (RAPD) primers. Seventy-three of 112 primers amplified PCR DNA products used to fingerprint the accessions. Thirty-two primers were considered highly informative because they amplified more than 5 bands or amplified one or more polymorphic bands that distinguished between accessions. RAPDs showed high genetic diversity in taro accessions from Indonesia, were capable in distinguishing between Hawaiian accessions, and could separate triploid from diploid accessions. UPGMA cluster analysis of genetic similarity estimates (Jaccard's coefficient), separated the accessions into 3 main groups with C. esculenta divided into 5 subgroups. These primers will be useful for future genetic analysis and provide taro breeders with a genetic basis for selection of parents for crop improvement. Polymorphic markers identified in the DNA fingerprinting study will be useful to screen a segregating population which is being generated in our laboratory aimed at developing a taro genetic linkage map. This revised version was published online in July 2006 with corrections to the Cover Date.     

Karyotypic and electrophoretic studies on taro and its origin

Summary Karyotypes and electrophoretic pattern of 15 strains of taro were studied. Strains collected from the northeast India hill state, Meghalaya were diploids and triploids whereas those from the plains of south India were diploids and of north India was a triploid. The diploids had 2n=28 and triploids showed 2n=42 chromosomes. The wild taro had the most asymmetrical karyotype. The protein content varied from 4.2 to 11.4 mg/g dry wt. The maximum protein content was found in a triploid strain 8 (11.4 mg/g dry wt) and minimum in the wild taro (4.2 mg/g dry wt). The number of protein bands was 7 in the wild taro (diploid) and 12 in one of the cultivated triploid strain. Meghalaya strains showed great variation with respect to leaf size and tuber shape and size. All the strains have diverged at morphological, karyotypic and genotypic levels. It is suggested that taro might have originated in the north-eastern India.     

Mitochondrial DNA variation in foxtail millet, Setaria italica (L.) P. Beauv.

Mitochondrial DNA (mtDNA) wascharacterized by RFLPs in 94 strains offoxtail millet, Setaria italica (L.)P. Beauv. Three RFLP patterns wereobserved by using rice atp6 as aprobe, and were designated as types I-III. Difference between types I and II seems tobe attributed to recombination between twoatp6 genes. In East and SoutheastAsia and Afghanistan, both of types I andII were found, while type I was predominantin India, Central Asia and Europe. InChina, type III was also found. Chinesestrains showed higher gene diversity thanthose from other regions. This resultcoincided the previous studies on isozymesand nuclear RFLPs.     

First genetic maps and QTL studies of yield traits of taro (Colocasia esculenta (L.) Schott)

The paper presents the first taro (Colocasia esculenta L. Schott) genetic maps. Taro is an important vegetatively propagated root crop species in most subtropical areas. It is an allogamous and protogynous species with a basic chromosome number of x = 14. Two F₁ progenies of 123 and 100 individuals obtained from crosses between local cultivars from Vanuatu (VU101 × VU104 and VU373 × VU314) were chosen for this study. Both genetic maps contained 169 markers, mainly AFLPs and 8 SSRs, and were characterised by a high density of markers and a short map length. The maps had 14 and 18 linkage groups (LG) respectively and were not completely saturated. Twenty-four markers were identified across the two progenies and a good co-linearity was observed for the majority of these markers. A QTL detection study was conducted on both progenies with 91 and 89 individuals respectively. Several putative QTLs were identified for corm yield and corm dimensions (which were highly correlated traits) whereas no QTL was detected for dry matter content. This result was relatively unexpected since dry matter content was a more highly heritable trait than corm yield or corm dimensions. A major dominant gene, responsible for the yellow colour of the corm flesh, was also identified. Further mapping studies on taro should include a larger number of SSR markers, larger progenies should be created and other important traits related to yield and eating quality should be included in the QTL analyses.     

HPTLC screening of taro hybrids (Colocasia esculenta (L.) Schott) with high flavonoids and antioxidants contents

Taro (Colocasia esculenta) is the tropical root crop species featuring the greatest flavonoids diversity. Their quantification is important for breeding programmes focusing on biofortification. This study aims at developing an HPTLC protocol to compare the flavonoids fingerprints of more than 1800 hybrids belonging to 24 full‐sib families and to select genotypes with high levels of antioxidants. Twenty different chemical markers were identified based on bands R_f and colour. Flavonoids differ among individuals both quantitatively and qualitatively. Marker ‘A’ yielded the strongest antioxidant response to DPPH, equivalent to the one with quercetin pure standard. Overall, 377 high flavonoids content (HFC) hybrids were selected from 14 different families. The mean corm weight of HFC hybrids always appeared higher than the mean corm weight of the family they belong to. This method allows unambiguous selection of HFC hybrids. It also contributes to taro genetic improvement for nutritional value and access to new markets and to strengthen corm tolerance to pests and diseases. It could be applied to other tropical root crop species.     

Mitochondrial DNA analysis reveals cytoplasmic variation within a single cultivar of perennial ryegrass (Lolium perenne L.)

Summary The extent of mitochondrial DNA restriction fragment length polymorphisms among individual plant samples of perennial ryegrass was determined. A total of 72 plants from three cultivars Yorktown II, S23 and Riikka were surveyed using three restriction enzymes (BamHI,EcoRI andHindIII) and three mitochondrial gene probes (coxI, coxIII andnad9). Polymorphisms were noted within each of the two cultivars Yorktown II and S23, whereas in Riikka no variation was detected. It seems most likely that the mitochondrial genome diversity within the same cultivar has resulted from non-homogeneous ancestor cytoplasms. The hybridization-based assay employed is simple to perform, gives unambiguous results, and may thus be used in mass screening of perennial ryegrass populations for breeding purpose.     

Genetic variability in foxtail millet, Setaria italica (L.) P. Beauv. - RFLP using a heterologous rDNA probe

Ribosomal DNA was surveyed in a world collection (43 lines) of Setaria italica for variation in repeat unit length and restriction enzyme site variability using a non-radioactive wheat rDNA probe. Only two lengths of repeat units of about 7.9 or 7.6 kb were observed. The fact that these two repeat unit lengths were not randomly dispersed throughout the world collection suggests the existence of three genetic groups. The central European lines and most western European accessions have only the 7.6 kb repeat unit and most Asiatic lines have a 7.9 kb repeat unit. Lines originating from the north or the south of Asia showed different numbers of Bam HI fragments. The fact that the difference between the Asiatic and European pool is not continuous (7.9 or 7.6 kb) excludes the hypothesis of domestication being based on the spread of an initial population over Eurasia.     

Pollen storage in cocoyam (Xanthosoma sagittifolium (L.) Schott)

Summary The effect of different storage conditions on cocoyam pollen viability was investigated. Two levels of temperature (0° and 5°C) and four levels of relative humidity (0, 10, 20 and 30 percent) represented the storage environments.Viable cocoyam pollen could be obtained after 28 days in storage. The best storage condition was 5°C and 30% relative humidity.     

B_9、PP_(333)和ABA对芋头种质离体保存的影响研究

为延长芋头试管苗的保存时间,提高试管苗的成活率,以槟榔芋丛芽为试验材料,采用3种不同浓度的生长延缓剂和不同的温度和光照培养条件对芋头试管苗成活率的影响进行研究。结果表明,在常温(25±2)℃光照培养条件下,PP333、ABA和B9的最佳处理浓度分别为2.0、2.0、1.0 mg/L;在低温(5±1)℃光照培养条件下,PP333、ABA和B9的最佳处理浓度分别为1.0、1.0、0.5 mg/L;在低温(5±1)℃暗培养条件下,PP333、ABA和B9的最佳处理浓度为1.0、1.0、0.5 mg/L。与常温光照培养相比,低温光照培养的芋头试管苗成活率更高,生长延缓剂的最佳处理浓度也相对更低。与低温光照培养相比,低温暗培养的芋头试管苗的存活率相对更高,两者的处理浓度相同,但低温暗培养提高了芋头试管苗的存活率。通过离体保存的试管苗恢复生长后,长势旺盛,与对照株无明显差异,3种植物生长延缓剂均能有效提高芋头试管苗的成活率。     

Intra species variation in Atylosia scarabaeoides (L.) Benth., a wild relative of pigeonpea (Cajanus cajan (L.) Millsp.)

Summary Atylosia scarabaeoides (L.) Benth., a wild relative of pigeonpea, possesses several useful genes which can be utilized for pigeonpea improvement. In the present study, 33 accessions of A. scarabaeoides were evaluated at ICRISAT Center during the 1987 rainy season for variation in some useful traits to identify parents for inter-generic hybridization. A large variation was observed for leaf components, seed size, pod length, seeds/pod, days to flowering, seed protein, sulphur amino acids, resistance to cyst nematode, phytophthora blight, sterility mosaic, fusarium wilt, pod borer, pod fly, and pod wasp. Only four accessions were found to have more than 28% protein content. Methionine and cystine contents were marginally higher than in pigeonpea but the variation was not large enough to utilize them in the breeding program. In A. scarabaeoides. accessions resistant to fusarium wilt, phytophthora blight, sterility mosaic, and cyst nematode were detected. Compared to pigeonpea, the A. scarabaeoides accessions were less susceptible to lepidopteran borer and were immune to pod fly damage. Accessions ICPW 89 and ICPW 111 in short- (100–120 days), and ICPW 94 and ICPW 118 in medium-duration (140–180 days) were identified as potential parents for use in inter-generic hybridization.ICRISAT Journal Article No. 967     

RAPD-based genetic diversity study of fifty cassava (Manihot esculenta Crantz) genotypes

Fifty cassava clones were studied using RAPD technique. They included landraces from the Wenchi, Nkoranza, Dormaa Ahenkoro and Asonafo districts of the Brong Ahafo region of Ghana and three improved varieties. Genetic diversity of these genotypes was studied using four primers, OPK-01, OPR-02, OPR-09 and OPJ-14. A total of 41 different bands were detected. Levels of polymorphic fragments detected by the four primers ranged from 90% to 100%. By pooling bands from individual accessions together, mean number of fragments per accession per primer ranged from 5.50±1.04 for the Improved cultivars to 7.00±0.71 for populations of landraces from Dormaa. Mean frequencies of fragments not detected by the primers for the accessions were 0.524±0.12, 0.460±0.12, 0.561±0.12 and 0.523±0.12 for landraces from Wenchi, Nkoranza, Dormaa Ahenkro, Asonafo and the Improved varieties, respectively. The grand mean frequency of individuals showing fragments not present in populations was 0.522±0.10. Genetic diversity estimates ranged from 0.290 to 0.425 (mean 0.352±0.05) for primer OPK-01, 0.001 to 0.381 (mean 0.309±0.06) for primer OPR-02, 0.335 to 0.344 (mean 0.283±0.04) for primer OPR-09 and 0.152 to 0.352 (mean 0.261±0.07) for primer OPJ-14. Within the accessions mean gene diversity estimates were 0.316±0.03, 0.293±0.09, 0.331±0.02, 0.322±0.07 and 0.247±0.03 for accessions from Wenchi, Nkoranza, Dormaa Ahenkro, Asonafo districts and the Improved varieties, respectively. Interpopulational genetic divergence ranged from 0.069 to 0.203 (mean 0.119±0.04). Rate of nucleotide substitution among the landraces was 9.8 per cent per site per year, while that for the Improved varieties was 15 per cent. This revised version was published online in August 2006 with corrections to the Cover Date.     

Heredity of seventeen isozyme loci in cassava (Manihot esculenta Crantz)

Summary Starch gel electrophoresis was used to assess isozyme polymorphism in two Manihot species. Crude extracts were obtained from leaves and pollen. Ten enzymes were examined for their polymorphism in a germplasm collection of 365 cultivated plus 109 wild accessions, mainly from Africa. The inheritance of these enzymes was examined using 13 intra and interspecific progenies. Seventeen polymorphic loci were found for the ten enzyme systems, with 59 alleles. All the markers showed disomic heredity and three linkage groups were identified.     

Origin,classification, variation and distribution of lima bean (Phaseolus lunatus L.) in the light of Cuban material

Summary Recent collecting activities have shown that Cuba is rich in plant genetic resources of lima beans. Seed characters of 173 Cuban accessions were measured. Principal component analysis and discriminant factor analysis were used to compare the accessions, which could be classified into seven groups: wild, weed, Potato, Potato-Sieva, Sieva, Sieva-Big Lima, Big Lima. The Sieva type is the principal group of Cuba. It has arrived to Cuba in pre-Columbian times via the Antilles arc. After the Conquest the Potato type was introduced from Central America. Introgressive hybridization with the Sieva group led to the intermediate Potato-Sieva type, whereas the Sieva-Big Lima type resulted from selection toward larger seeds within the Sieva group. The Big Lima type was introduced relatively late. Cuba occupies a key position in the distribution of Lima beans within the Americas and also to the Old World.     

Analysis of geographical and breeding-related distribution of hybrid necrosis genes in bread wheat (Triticum aestivum L.)

Using the Information and Analytical System of Wheat Genetic Resources GRIS 3.2, the peculiarities of distribution of hybrid necrosis genes in bread wheat in different regions of the world were analyzed. Considerable variation in frequencies of the Ne1 and Ne2 genes in regions with different moisture and heat supply was revealed. A significant effect of breeding on frequency dynamics of different genotypes Ne1ne2, ne1Ne2 and ne1ne2 was confirmed. This revised version was published online in July 2006 with corrections to the Cover Date.