Nocturnality in dinosaurs inferred from scleral ring and orbit morphology

Variation in daily activity patterns facilitates temporal partitioning of habitat and resources among species. Knowledge of temporal niche partitioning in paleobiological systems has been limited by the difficulty of obtaining reliable information about activity patterns from fossils. On the basis of an analysis of scleral ring and orbit morphology in 33 archosaurs, including dinosaurs and pterosaurs, we show that the eyes of Mesozoic archosaurs were adapted to all major types of diel activity (that is, nocturnal, diurnal, and cathemeral) and provide concrete evidence of temporal niche partitioning in the Mesozoic. Similar to extant amniotes, flyers were predominantly diurnal; terrestrial predators, at least partially, nocturnal; and large herbivores, cathemeral. These similarities suggest that ecology drives the evolution of diel activity patterns.     

Comment on "Genetically determined differences in learning from errors"

Klein et al. (Reports, 7 December 2007, p. 1642) used individuals with a polymorphism adjacent to the dopamine receptor 2 gene as naturally occurring models for reduced brain dopamine receptor density in a probabilistic learning task. We raise the concern that this polymorphism resides in the gene for the kinase ANKK1, where it causes a nonconservative amino acid exchange.     

Comment on "Wetland sedimentation from hurricanes Katrina and Rita"

Turner et al. (Reports, 20 October 2006, p. 449) measured sedimentation from Hurricanes Katrina and Rita in coastal Louisiana and inferred that storm deposition overwhelms direct Mississippi River sediment input. However, their annualized hurricane deposition rate is overestimated, whereas riverine deposition is underestimated by at least an order of magnitude. Their numbers do not provide a credible basis for decisions about coastal restoration.     

Comment on "Reconstructing past climate from noisy data"

von Storch et al. (Reports, 22 October 2004, p. 679) criticized the ability of the "hockey stick" climate field reconstruction method to yield realistic estimates of past variation in Northern Hemisphere temperature. However, their conclusion was based on incorrect implementation of the reconstruction procedure. Calibration was performed using detrended data, thus artificially removing a large fraction of the physical response to radiative forcing.     

Comment on "Carbon-negative biofuels from low-input high-diversity grassland biomass"

Tilman et al. (Reports, 8 December 2006, p. 1598) argued that low-input high-diversity grasslands can provide a substantial proportion of global energy needs. We contend that their conclusions are not substantiated by their experimental protocol. The authors understated the management inputs required to establish prairies, extrapolated globally from site-specific results, and presented potentially misleading energy accounting.     

Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"

Asara et al. (Reports, 13 April 2007, p. 280) reported sequencing of Tyrannosaurus rex proteins and used them to establish the evolutionary relationships between birds and dinosaurs. We argue that the reported T. rex peptides may represent statistical artifacts and call for complete data release to enable experimental and computational verification of their findings.     

Comment on "Whole-genome shotgun sequencing of mitochondria from ancient hair shafts"

Gilbert et al. (Reports, 28 September 2007, p. 1927) reported that "hair shafts surpass comparably stored bone as an aDNA source [...] in regard to preservation and concentration of mtDNA." When experimental parameters are carefully controlled for, including adequate sampling, quantitative polymerase chain reaction analysis, and modeling the decay of DNA, the general importance of this claim is not supported.     

Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"

We used authentication tests developed for ancient DNA to evaluate claims by Asara et al. (Reports, 13 April 2007, p. 280) of collagen peptide sequences recovered from mastodon and Tyrannosaurus rex fossils. Although the mastodon samples pass these tests, absence of amino acid composition data, lack of evidence for peptide deamidation, and association of alpha1(I) collagen sequences with amphibians rather than birds suggest that T. rex does not.     

Comment on "Determining chondritic impactor size from the marine osmium isotope record"

Paquay et al. (Reports, 11 April 2008, p. 214) reported that osmium isotope ratios in marine sediments can be used to determine the size of a chondritic impactor. Their assumptions on the fate of an impacting projectile may need to be reassessed, however, because only a small, unpredictable fraction of the impactor ends up dissolved in seawater.     

Comment on "Drought-induced reduction in global terrestrial net primary production from 2000 through 2009"

Zhao and Running (Reports, 20 August 2010, p. 940) reported a reduction in global terrestrial net primary production (NPP) from 2000 through 2009. We argue that the small trends, regional patterns, and interannual variations that they describe are artifacts of their NPP model. Satellite observations of vegetation activity show no statistically significant changes in more than 85% of the vegetated lands south of 70°N during the same 2000 to 2009 period.     

Comment on "Ancient DNA from the first European farmers in 7500-year-old Neolithic sites"

On the basis of analysis of ancient DNA from early European farmers, Haak et al. (Reports, 11 November 2005, p. 1016) argued for the Paleolithic ancestry of modern Europeans. We stress that the study is more limited in scope than the authors claim, in part because not all of the skeletal samples date to the time of the Neolithic transition in a given area of Europe.     

Comment on "Decagonal and quasi-crystalline tilings in medieval Islamic architecture"

Lu and Steinhardt (Reports, 23 February 2007, p. 1106) claimed the discovery of a large, potentially quasi-crystalline Islamic tiling in the Darb-i Imam shrine but regard the earlier Maragha tiling, previously described as quasiperiodic, as a small isolated motif. We demonstrate that the Darb-i Imam pattern is periodic and that the quasi-crystalline discs superimposed on its lattice are derivatives of the Maragha pattern.     

Comment on "Global trends in wind speed and wave height"

Young et al. (Reports, 22 April 2011, p. 451) reported trends in global mean wind speed much larger than found by other investigators. Their report fails to reference these other investigations and does not discuss the consequences that such large wind trends would have on global evaporation and precipitation. The difference between their altimeter and buoy trends suggests a relatively large trend error.     

Comment on "Detecting awareness in the vegetative state"

Owen et al. (Brevia, 8 September 2006, p. 1402) claimed that a patient's brain activity revealed that she was consciously responding to commands despite being in a vegetative state. However, several alternative explanations were not eliminated. Specifically, the activity could reflect unconscious reactions to the last word in the command, not conscious decisions to respond. A refined experimental design could clarify these issues.