Reintroduction and establishment of the western barred bandicoot Perameles bougainville (Marsupialia: Peramelidae) at Shark Bay, Western Australia

The western barred bandicoot was reintroduced to the Australian mainland in 1995 after an absence of at least 60 years. The new population was derived from 14 animals, reintroduced to Heirisson Prong from Dorre Island in Shark Bay, Western Australia. Introduced predators (the European red fox and the feral cat) were controlled at the reintroduction site, but European rabbits were not. A large fenced area of natural vegetation within the reintroduction site was used as a secure refuge from mammalian predators. Bandicoots were released from this predator refuge to the 12 km² conservation site. Dispersal from the point of free release was minimal. The reintroduced population has persisted for 4 years and increased, with at least 175 bandicoots recruited to the population in this time. The recapture rate of marked bandicoots was low, suggesting that adult mortality was high. Reproductive output at Heirisson Prong appeared greater than that of the two surviving wild populations on Bernier and Dorre Islands. Litter size was similar, but there was an extended annual breeding season at the reintroduction site. Body condition of reintroduced and wild bandicoots were similar, although there was some indication that reintroduced males may have been in poorer condition than their island counterparts. The litter size of bandicoots increased with a decrease in rabbit abundance, however, bandicoots were able to reproduce, maintain condition, and sustain recruitment to allow the population to increase despite the presence of rabbits. Two fox incursions occurred during the 4-year period of establishment, and feral cats were present on occasion in low numbers. Feral cats may be responsible for a lower rate of population increase than that observed on predator-free Dorre Island. Ongoing predator control is essential for any mainland reintroduction of bandicoots.     

Genetic diversity and local population structure of fragmented populations of Trillium camschatcense (Trilliaceae)

Trillium camschatcense, a long-lived common woodland herb, has been experiencing intensive habitat fragmentation over the last century in eastern Hokkaido, Japan. We examined the genetic diversity and population genetic structure of 12 fragmented populations with different population sizes using allozyme electrophoresis. The percentage of polymorphic loci and mean number of alleles per locus were positively related to population size, probably due to the stochastic loss of rare alleles (frequency of q<0.1) in small populations. Populations with 350 flowering plants or fewer had lost almost all of their rare alleles. While the heterozygosity and inbreeding coefficient were not related to population size, some small populations showed relatively high inbreeding coefficients. In spite of the low genetic differentiation among overall populations (F_ST=0.130), local population structuring was recognized between the two geographically discontinuous population groups. Within groups, sufficient historical gene flow was inferred, whereas a low dispersal ability of this species and geographical separation could produce apparent differentiation between groups.     

Predation by New Zealand sea lions (Phocarctos hookeri) as a threat to the viability of yellow-eyed penguins (Megadyptes antipodes) at Otago Peninsula, New Zealand

This study presented evidence that creates a quandary for conservation management: predation by one threatened species, New Zealand sea lion (Phocarctos hookeri), threatens the viability of another threatened species, yellow-eyed penguin (Megadyptes antipodes), at Otago Peninsula, South Island, New Zealand. Otago Peninsula holds the largest population of yellow-eyed penguins on South Island and the only breeding population of New Zealand sea lions on the New Zealand mainland. New Zealand sea lions here represent the vanguard of re-colonisation within their prehistoric range, with nine females and 50-70 males resident in 2005. The initial indication of a potential problem was an attack on a yellow-eyed penguin by a New Zealand sea lion witnessed in 1996. The majority of 20 records for attacks were at two neighbouring sites, where they coincided with decreases in penguin nest numbers and adult annual survival. In contrast, penguin nest numbers increased at a third site, the main base for male sea lions at Otago Peninsula. Evidence from prey remains indicated that male sea lions did not eat yellow-eyed penguins but that females ate 20-30 annually, with one individual possibly responsible for most kills. Modelling indicated that the penguin population at any one site could not remain viable if it was the sole source of penguins killed. The dilemma is either to do nothing, and risk collapse of the Otago Peninsula population of yellow-eyed penguins, or to take action against known culprits, and risk failure in re-colonisation of the New Zealand mainland by New Zealand sea lions.     

Reduced effective population size in an overexploited population of the Nile crocodile (Crocodylus niloticus)

Unchecked exploitation of wildlife resources is one of the major factors influencing species persistence throughout the world today. A significant consequence of exploitation is the increasing rate at which genetic diversity is lost as populations decline. Recent studies suggest that life history traits affecting population growth, particularly in long-lived species, may act to moderate the impact of population decline on genetic variation and lead to remnant populations that appear genetically diverse despite having passed through substantial demographic bottlenecks. In this study we show that the retention of genetic variation in a partially recovered population of Nile crocodile is deceptive, as it masks the reality of a significant decline in the population’s effective size (N_e). Repeated episodes of unchecked hunting in the mid to late 20th century have today led to a five-fold decrease in the population’s N_e. Using current census data we estimate the contemporary N_e/N ratio as 0.05 and, in light of quotas that permit the ongoing removal of adults, simulated the likely effects of genetic drift on extant levels of variation. Results indicate that even if the current effective size is maintained, both allelic diversity and heterozygosity will decline. Our findings have complex implications for long-lived species; an emphasis on the retention of genetic variation alone, whilst disregarding the effects of population decline on effective size, may ultimately obscure the continued decline and extinction of exploited populations.     

The importance of understanding spatial population structure when evaluating the effects of silviculture on spotted salamanders (Ambystoma maculatum)

Current silvicultural practices in the northeastern United States create diverse vegetation patterns and microclimates that provide a mosaic of terrestrial habitats for amphibian species. We inferred patterns of habitat use by the spotted salamander, Ambystoma maculatum, by studying colonization of four newly created breeding pools each surrounded by four different forest treatments: a control, partial cut, clearcut with coarse woody debris (CWD) removed, and clearcut with CWD retained. Created pools were rapidly colonized, indicating that breeding salamanders readily bred in new pools they encountered. This suggests that in our study area pool-specific philopatry and site fidelity may not be high and that particular pools may not define local breeding populations. In the experimental silvicultural treatments, juvenile salamanders preferred the control forest to the clearcuts, whereas adult salamanders showed no significant preferences among the treatments. Although silvicultural practices such as clearcutting may reduce juvenile movement between pools, inter-pool movement by adults that are more tolerant of habitat change may ameliorate this effect in our study area. If juveniles are the primary life-history stage dispersing between local populations (i.e., moving between more isolated groups of pools), however, there is potential for clearcutting to reduce the connectivity between local populations.     

Sensitivity to cadmium of the standard test species Folsomia candida compared to two other species, Onychiurus yodai and Sinella umesaoi (Collembola)

Knowing whether test species used for single-species toxicity tests are representative of other species provides valuable information because contaminant effects are often extrapolated to the community level based on these tests. To evaluate how representative the sensitivity of the standard test collembolan species Folsomia candida is for Collembola, we devised toxicity tests using the collembolan species Onychiurus yodai and Sinella umesaoi, which exhibit life-forms different from F. candida. Sensitivity to cadmium (Cd) was compared between F. candida and the novel test species. The 50% effective concentrations for reproduction were 154.7, 72.2 and 40.9 mg Cd/kg dry soil for O. yodai, F. candida and S. umesaoi, respectively. Thus, the reproductive sensitivity of F. candida to Cd was between that of the other two species. Increasing reproductive sensitivity to Cd corresponded to increasing activity levels and a more surface-dwelling life-form. Our data may facilitate the generalisation of effect data for F. candida to other species.     

茂名大放鸡海域文昌鱼分布与种群特性研究

研究表明茂名大放鸡海域的文昌鱼主要分布在东经111°10′～111°17′,北纬21°19′～21°27′区域,分布面积达195．5km2,平均资源密度为51～86尾／m2,最高达到815尾／m2,文昌鱼分布密度中心概位在小放鸡西至西北侧附近;体长结构具明显的季节变动,秋冬季节是文昌鱼的主要补充季节;性腺成熟度和性别比例在不同季节和生长阶段具有明显的差异,春季性成熟个体占的比重最高达65％;随着体长的增加文昌鱼性腺成熟度也渐次增加,体长与性腺成熟度比例成三次曲面关系;其性比随着体长增长发生明显变化,体长为35～60mm时雌雄个体性比接近1,体长大干60mm时雌性个体数量明显小于雄性;文昌鱼全年的体长体重关系方程为W=0．0012L3.32;当体长达到50mm后文昌鱼资源群体尾数减少系数为0．55／cm。     

斜纹夜蛾自然种群数量动态预测研究

根据斜纹夜蛾发育历期与温度的数学关系、卵和幼虫田间自然存活率及田间逐日产卵量参数,研究建立了斜纹夜蛾种群数量动态预测的变维矩阵模型。并运用该模型预测南昌市郊区甘蓝田斜纹夜蛾自然种群数量动态,其预测结果与实际观测结果基本相符。     

From genetic diversity and structure to conservation: Genetic signature of recent population declines in three mouse lemur species (Microcebus spp.)

The exceptional biodiversity of Madagascar is threatened by anthropogenic landscape changes that took place during the 2000 years of human colonization. This study focuses on the influence of geographic distance and forest fragmentation on genetic diversity and population differentiation of three rare, nocturnal, arboreal lemur species in northwestern Madagascar. Historic declines in population sizes as a consequence of forest fragmentation are quantified and dated. Eighteen sites were visited, and a total of 205 Microcebus ravelobensis, 45 M. bongolavensis and 78 M. danfossi were genotyped with eight microsatellite loci. Genetic differentiation among the sites, as measured by F_ST, ranged from 0.01 to 0.19. These values were significant in almost all cases and indicated genetic structure in the samples. Isolation-by-distance was detected in one species and a STRUCTURE analysis indicated that fragmentation further promoted genetic differentiation. Bayesian methods revealed that populations from all three species underwent a major demographic collapse of around two orders of magnitude. This decrease probably began after the arrival of humans, most likely within the last 500 years. This result suggests that anthropogenic changes may have been limited during the first 1500 years of human colonization in all three ranges. Two of the study species (M. danfossi, M. bongolavensis) lack effectively protected areas in their ranges. Consequently, quick conservation actions are now needed in order to secure the remaining genetic diversity of these species.     

Reproductive constraints for the long-term persistence of fragmented Acacia dealbata (Mimosaceae) populations in southeast Australia

Fragmented and degraded vegetation characterises agricultural landscapes across southern Australian. Remnant vegetation within these regions performs a number of vital ecological and hydrological roles, but little is known about whether or how fragmentation is affecting the long-term persistence of these critical landscape elements. Acacias are a significant component of many remnant vegetation communities across Australia, forming numerous integral faunal and floral relationships. Here, reproductive output of 11 fragmented Acacia dealbata (Mimosaceae) populations from across the southern tablelands of New South Wales was assessed over 2 years to identify reproductive constraints associated with increasing vegetation fragmentation. Fertilization success is the major reproductive constraint, particularly in small populations, and probably reflects a self-incompatible reproductive strategy. During 2002 larger and more dense populations produced more legumes (p = 0.014 and <0.001, respectively) while in 2003 these two variables were associated with increased fertilization success (p = 0.004 and 0.017, respectively). There was also some suggestion that populations with fewer exotic species also experienced increased fertilization success (p = 0.055). Assessment of plant performance within populations suggests that consistent reproductive output of particular individuals within small populations may limit reproductive compatibility within these populations over time. The long-term persistence of many small A. dealbata populations may be jeopardised by low seed set, and limited recruitment and aging stands. Immediate steps are now required to ensure that these populations continue contributing to landscape function by augmenting populations, improving connectivity, and allowing disturbance events that will stimulate recruitment.     

The genetic structure of coastal giant salamanders (Dicamptodon tenebrosus) in a managed forest

The salamander, Dicamptodon tenebrosus, is threatened by habitat loss and fragmentation associated with forest harvest activities. We used three microsatellite loci and 38 amplified fragment length polymorphisms (AFLPs) to quantify population structure and indirectly evaluate the impacts of forest harvesting on this species. We sampled two old growth sites, three second growth sites and three recently clearcut sites in British Columbia, Canada. Microsatellite allelic richness and the percentage of polymorphic AFLPs were positively correlated with the age of forest stands. Similarly, heterozygosity estimated from both marker types was positively correlated with stand age. Population subdivision (F_st) estimated among forested sites using microsatellite and AFLP markers was 0.033 and 0.095, respectively. Lower genetic variation and heterozygosity in recent clearcuts suggest that clearcut logging may be associated with local population declines. Our genetic findings are consistent with previous studies that report lower salamander densities in recently clearcut sites.     

Spatial analysis of habitat quality in a fragmented population of little bustard (Tetrax tetrax): Implications for conservation

Little bustard populations have suffered reduction and isolation as a consequence of landscape transformations resulting from changes in traditional agricultural systems. Consequently, the species survives within reduced and fragmentary habitats, like islands isolated in a modified matrix. In this paper, we analyze the spatial variations in male density and habitat quality in a fragmented population located at the limit of the species’ Iberian range, which is affected by agricultural intensification, using a regional modelling approach. Habitat quality (quantified according to the species perception) and bird density decreased along the intensification gradient. However, in the most intensive agricultural zone, the quality of habitats selected by little bustard males increased, while density decreased, against the expected. In possible explanation, we suggest: (1) density is not necessarily a good indicator of habitat quality, (2) population could be under-saturated in this zone, (3) interannual variations in species distribution, or (4) other relevant variables related to the agricultural intensification process not included in this analysis, such as small-scale disturbances. Analysis of population distribution pattern showed a spatial configuration in which the most densely populated squares were located at the core of the biggest population patches, in contact with mid-density squares, and all surrounded by low-density squares. Fragmentation negatively affected habitat quality and male density. Largest population patches, containing higher density values, were located at the beginning of the intensification gradient. Preservation of little bustard densities is related to an adequate management of the farming system. Habitat fragmentation requires an urgent conservation strategy to prevent local and regional scale habitat deterioration, by reducing patch isolation to maintain genetic diversification and functional connectivity.     

Dynamics of a declining amphibian metapopulation: Survival, dispersal and the impact of climate

Climate can interact with population dynamics in complex ways. In this study we describe how climatic factors influenced the dynamics of an amphibian metapopulation over 12 years through interactions with survival, recruitment and dispersal. Low annual survival of great crested newts (Triturus cristatus) was related to mild winters and heavy rainfall, which impacted the metapopulation at the regional level. Consequently, survival varied between years but not between subpopulations. Despite this regional effect, the four subpopulations were largely asynchronous in their dynamics. Three out of the four subpopulations suffered reproductive failure in most years, and recruitment to the metapopulation relied on one source. Variation in recruitment and juvenile dispersal was therefore probably driving asynchrony in population dynamics. At least one subpopulation went extinct over the 12 year period. These trends are consistent with simulations of the system, which predicted that two subpopulations had an extinction risk of >50% if adult survival fell below 30% in combination with low juvenile survival. Intermittent recruitment may therefore only result in population persistence if compensated for by relatively high adult survival. Mild winters may consequently reduce the viability of amphibian metapopulations. In the face of climate change, conservation actions may be needed at the local scale to compensate for reduced adult survival. These would need to include management to enhance recruitment, connectivity and dispersal.     

Genetic structure, population dynamics, and conservation of Black caiman (Melanosuchus niger)

Microsatellite DNA polymorphisms were screened in seven populations of the largest Neotropical predator, the Black caiman Melanosuchus niger (n = 169), originating from Brazil, French Guiana and Ecuador. Eight loci were used, for a total of 62 alleles. The Ecuadorian population had the lowest number of alleles, heterozygosity and gene diversity; populations of the Guianas region exhibited intermediate diversities; highest values were recorded in the two populations of the Amazon and Rio Negro. During the last century Melanosuchus populations have been reduced to 1-10% of their initial levels because of hunting pressure, but no strong loss of genetic diversity was observed. Both the inter-locus g-test and the Pk distribution suggested no recent important recovery and/or expansion of current populations. On a global scale, the inter-population variation of alleles indicated strong differentiation (F_ST = 0.137).Populations were significantly isolated from each other, with rather limited gene flow; however, these gene flow levels are sufficiently high for recolonization processes to effectively act at regional scales. In French Guiana, genetic structuring is observed between populations of two geographically close but ecologically distinct habitats, an estuary and a swamp. Similar divergence is observed in Brazil between geographically proximate “black water” and “white water” populations. As a consequence, the conservation strategy of the Black caiman should include adequate ecosystem management, with strong attention to preservation of habitat integrity. Distribution of genetic diversity suggests that current populations originated from the central Amazonian region. Dispersal of the species may thus have been deeply influenced by major climatic changes during the Holocene/Pleistocene period, when the Amazonian hydrographic networks were altered. Major ecological changes such as glaciations, marine transgressions and a hypothesized presence of an Amazonian Lake could have resulted in extension of Black caiman habitats followed by isolation.     

Extreme population divergence and conservation implications for the rare endangered Atlantic Forest sloth, Bradypus torquatus (Pilosa: Bradypodidae)

The maned sloth (Bradypus torquatus) is an endangered species endemic to the Atlantic Forest of eastern Brazil. This biome has been reduced to 7% of its original extent and the remaining forests are highly fragmented. We analyzed 70 samples from the largest remnant populations in the states of Bahia, Espírito Santo and Rio de Janeiro to characterize their geographic structure and to produce estimates of genetic diversity. The analysis indicated that the remnant populations are reproductively isolated and extremely divergent. The populations present a very discontinuous distribution, with divergent genetic clusters specific to different geographical regions, probably caused by allopatric fragmentation. This pattern is likely related to Pleistocenic climatic and vegetation changes, and indicates the presence of at least two independent evolutionary units. The analyses also indicate that populations separated by more than 100 km should be considered different management units. Thus, devastation of the Atlantic Forest leads to an unrecoverable loss of genetic diversity in this species. These conclusions should direct conservation actions aimed at preserving the distinctiveness of each evolutionary unit, as well as to preserve the demographic isolation of different management units.     

Microsatellite analysis of genetic population structure of the endangered cyprinid Anaecypris hispanica in Portugal: implications for conservation

The endangered fish species Anaecypris hispanica is restricted to eight disjunct populations in the Portuguese Guadiana drainage. The genetic structure of these populations was studied in order to determine levels of genetic variation within and among populations and suggest implications for conservation of the species. Based on five microsatellite loci, the null hypothesis of population homogeneity was tested. Tests for genetic differentiation revealed highly significant differences for pairwise comparisons between all populations, and substantial overall population subdivision (F_ST=0.112). All sampled populations contained unique alleles. Our findings indicate marked genetic structuring and emphasise limited dispersal ability. The high levels of genetic diversity detected within and among A. hispanica populations suggest, however, that the observed fragmentation and reduction in population size of some populations during the last two decades, has impacted little on levels of genetic variability. Data imply that most A. hispanica populations should be managed as distinct units and that each has a high conservation value containing unique genetic variation. It is argued that geographic patterns of genetic structuring indicate the existence of eight management units.     

Genetic differences between the two remaining wild populations of the endangered Indian rhinoceros (Rhinoceros unicornis)

The management of rare and endangered species in the wild and in captivity requires an understanding of the characterization of the genetic units within each species and their relationships to each other. The Indian rhinoceros (Rhinoceros unicornis) is an endangered species with a current population size of c. 2800 individuals. We analyzed 26 individuals of known origin kept in captivity and 21 wild ranging individuals of the two remnant large wild populations in Assam (India) and Nepal employing mitochondrial and microsatellite markers to determine whether the two geographically isolated populations show distinct patterns of genetic diversity, and whether the genetic diversity of the populations is influenced by past demographic bottlenecks. We identified 10 different mitochondrial D-loop haplotypes, of which 4 were specific to the Assam population (10 sequences examined) and 6 specific to the Nepal population (19 sequences). Similarly, the microsatellite analysis demonstrated a strong genetic differentiation between the Assam and Nepal populations and allowed to assign each individual to its origin with high confidence. Furthermore, our analyses revealed the occurrence of a bottleneck in the Assam population long before the reported bottleneck in 1908, and it revealed that the Nepal population is a recent (probably post-glacial) colonization. In summary, the extent of genetic divergence between the two remnant R. unicornis populations suggests separate conservation programs (even for captive individuals) as long as the persistence of the entire species is not severely threatened. The microsatellite markers can also be used to determine the origin of confiscated material such as horns.     

The anatomy of a (potential) disaster: Volcanoes, behavior, and population viability of the short-tailed albatross (Phoebastria albatrus)

Catastrophic events, either from natural (e.g., hurricane) or human-induced (e.g., forest clear-cut) processes, are a well-known threat to wild populations. However, our lack of knowledge about population-level effects of catastrophic events has inhibited the careful examination of how catastrophes affect population growth and persistence. For the critically endangered short-tailed albatross (Phoebastria albatrus), episodic volcanic eruptions are considered a serious catastrophic threat since approximately 80% of the global population of ∼2500 birds (in 2006) currently breeds on an active volcano, Torishima Island. We evaluated how short-tailed albatross population persistence is affected by the catastrophic threat of a volcanic eruption relative to chronic threats. We also provide an example for overcoming the seemingly overwhelming problems created by modelling the population dynamics of a species with limited demographic data by incorporating uncertainty in our analysis. As such, we constructed a stochastic age-based matrix model that incorporated both catastrophic mortality due to volcanic eruptions and chronic mortality from several potential sources (e.g., contaminant exposure, fisheries bycatch) to determine the relative effects of these two types of threats on short-tailed albatross population growth and persistence. Modest increases (1%) in chronic (annual) mortality had a 2.5-fold greater effect on predicted short-tailed albatross stochastic population growth rate (lambda) than did the occurrence of periodic volcanic eruptions that follow historic eruption frequencies (annual probability of eruption 2.2%). Our work demonstrates that periodic catastrophic volcanic eruptions, despite their dramatic nature, are less likely to affect the population viability and recovery of short-tailed albatross than low-level chronic mortality.     

Translocation of Choctawhatchee beach mice (Peromyscus polionotus allophrys): hard lessons learned

Translocation of species for conservation purposes is a key element of many recovery programs. While the benefits of translocations seem obvious, potential negative effects have been described. For endangered beach mice (Peromyscus polionotus ssp.), repopulation of native, unoccupied habitat using translocated individuals has been extremely successful. Once populations are established, concerns over founder effects and isolation have led to proposals for continued secondary translocations. Unfortunately, little information is available to help formulate protocols for these actions. To test the effectiveness of translocation, the fates of 18 translocated Choctawhatchee beach mice (Peromyscus polionotus allophrys) were followed as they attempted to integrate into an established population. We found that translocated groups, repeated for two seasons, tended to use larger homeranges and significantly more burrows than did resident mice. The monthly (31 day) survival rate of resident mice was 3.4 times greater than for translocated individuals. We hypothesize that differential predation pressure was directly linked to the failure of mice to integrate successfully into the existing population. Given our results, we must advise caution and that additional knowledge be obtained before translocations are used to supplement existing populations.     

几种不同农艺措施对土壤甘薯茎线虫种群动态的影响

以连作5年、甘薯茎线虫病发病严重的甘薯地块为试验田,研究甘薯连作过程中轮作玉米／黑麦、轮作玉米／黑麦＋覆膜、轮作玉米／黑麦＋覆膜＋抗病品种和种植冬季覆盖作物黑麦4种防治方法对土壤甘薯茎线虫种群数量动态的影响。结果表明,轮作玉米／黑麦、轮作玉米／黑麦＋覆膜和轮作玉米／黑麦＋覆膜＋抗病品种3种处理可在甘薯生育前期和收获期显著抑制土壤甘薯茎线虫的种群水平,与连作甘薯相比甘薯茎线虫种群数量分别下降37．24％、49．45％和54．33％。甘薯增产幅度分别为130．34％、132．74％和161．73％。而种植黑麦处理不能显著抑制甘薯茎线虫的种群水平,与连作甘薯相比,甘薯茎线虫种群数量下降23．26％,甘薯增产83．26％,但二者间差异不显著。相关性分析表明,土壤中甘薯茎线虫种群数量与甘薯经济产量呈负相关,相关系数为-0．9789;与甘薯发病率和病情指数呈正相关,相关系数分别为0．9581和0．9754。4种防治方法中轮作玉米／黑麦＋覆膜＋抗病品种处理对土壤甘薯茎线虫种群抑制效果最好,提倡在生产上积极推广。