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1.
Weaning weight field records, supplied by the American Polled Hereford Association, were used to examine sire X environment interactions. Sire X herd/region and sire X contemporary group/herd interactions were evaluated from a data set containing 19,503 records. Sire X region interaction was evaluated from a data set containing 8,659 records. The genetic correlations of sire progeny performance across contemporary groups/herd were .59 and .37 across herds and contemporary groups/region. The average genetic correlation of sire progeny performance across regions was .64. Heritability of weaning weight was .11 across regions, .17 within region and .28 within herd. Mixed-model sire analyses of Polled Hereford weaning weight field records should include sire X herd/region and sire X contemporary group/herd random effects to reduce the sire X environment effects particular to any herd or contemporary group, and to account for the distribution of sire progeny across herds and contemporary groups in the estimation of prediction error variance. It may be necessary to perform separate sire analyses for some regions to evaluate the breeding values of sires in regions where rank changes are likely to occur.  相似文献   

2.
A total of 1,028 birth weight (BWT) and gestation length (GL) records were collected for calves from 1994 to 1997 in five U.S. Angus herds. Parental BWT EPD and dam BWT maternal breeding values (MBV) computed from the entire U.S. Angus data base after each breeding season were also available. A full model was fit to BWT that contained contemporary group (CG), sire BWT EPD, dam BWT EPD, and dam BWT MBV. A reduced model that dropped dam BWT MBV was also fit. The full model had smaller (P < .01) sum of squares for error than the reduced model. Calf BWT records were then adjusted for CG. Two data sets were formed to include adjusted BWT progeny records from sires with BWT EPD > or = .75 or > or = 1.0 SD above the mean of sires in the data set. Adjusted birth weights were assigned to either > or = .75 or other < .75 SD and > or = 1.0 or < 1.0 SD categories based on the mean BWT of calves in the entire data set. Dams were assigned to either > or =2 .75 or < .75 SD and > or = 1.0 or < 1.0 SD categories based on dam BWT EPD, MBV, or total maternal genetic contribution (TMGC = EPD + MBV). Chi-square analyses showed that dam BWT EPD, MBV, or TMGC categories were not independent (P < .10) of BWT SD categories, indicating that both dam BWT EPD and BWT MBV provide useful information to attenuate calf BWT. Calf BWT records were then adjusted for the overall mean, CG, sire and dam BWT EPD, and dam BWT MBV. Dams were then assigned to five categories: high dam EPD and MBV (HH), high dam EPD and low MBV (HL), low dam EPD and high MBV (LH), low dam EPD and MBV (LL), and other (OTH). High was > or = .75 or > or = 1.0 SD and low was < .75 or < 1.0 SD based on the mean BWT EPD or MBV of dams in the data set. In all adjusted BWT analyses, HH, HL, and LH categories did not differ (P > .05) from each other; however, the LL category was less (P < .05) than all other categories, indicating that calves from LL dams were lighter at birth than expected. For GL, LL was significantly different (P < .05) from only HH. The large differences in birth weight for the LL dams compared to other groups did not seem to be primarily due to shorter GL. Results showed that MBV provided additional information to control BWT; however, when both dam MBV and EPD were low, birth weight of calves was less than expected. Future research should focus on explanations for this interaction.  相似文献   

3.
Field data from Australian Angus herds were used to investigate 2 methods of analyzing uncertain binary responses for success or failure at first insemination. A linear mixed model that included herd, year, and month of mating as fixed effects; unrelated service sire, additive animal, and residual as random effects; and linear and quadratic effects of age at mating as covariates was used to analyze binary data. An average gestation length (GL) derived from artificial insemination data was used to assign an insemination date to females mated to natural service sires. Females that deviated from this average GL led to uncertain binary responses. Two analyses were carried out: 1) a threshold model fitted to uncertain binary data, ignoring uncertainty (M1); and 2) a threshold model fitted to uncertain binary data, accounting for uncertainty via fuzzy logic classification (M2). There was practically no difference between point estimates obtained from M1 and M2 for service sire and herd variance; however, when uncertain binary data were analyzed ignoring uncertainty (M1), additive variance and heritability estimates were greater than with M2. Pearson correlations indicated that no major reranking would be expected for service sire effects and animal breeding values using M1 and M2. Given the results of the current study, a threshold model contemplating uncertainty is suggested for noisy binary data to avoid bias when estimating genetic parameters.  相似文献   

4.
Three models of sire evaluation using different environmental groupings were compared. Effects fitted were herd, period (either 6 or 12 months) within herd, season (either 1 or 2 or 4 months) within period within herd, sire and linear and quadratic regressions on age at calving. Models differed in fitting (1) the effect of herd-period-season fixed, or (2) herd-period fixed and herd-period-season random, or (3) herd fixed, herd-period and herd-period-season random. The overall effects of period and season of calving were regarded as fixed, and were removed by precorrection. Records of first lactation fat yield on 49 242 progeny of 69 widely used proven Friesian-Holstein sires in 1628 herds in England and Wales were used.Compared to Model 1, Model 2 required about four-fifths and Model 3 required two-thirds of the effective number of daughters to give the equivalent variance of the estimates of sire effects. Using random effects models the relative advantage, in terms of a smaller variance of sire effects, increased as the size of herd-period-season subclass decreased.In herd-period-season fixed effects models subclasses with a single of few records, or subclasses with all or almost all records of the same sire, contribute nothing or little to the progeny group comparisons. The random effects models could avoid these losses, and were considered to be useful especially where herds are small, provided sires can be assumed as randomly distributed over environmental subclasses.  相似文献   

5.
6.
Two unselected herds of purebred Hereford and Angus cattle were created and their progeny evaluated during a 4-yr period (1964 to 1967) for 168-d postweaning gain when they were fed either a high- or medium-energy diet. Birth weight and 200-d adjusted weaning weight also were measured and the importance of sire x diet interactions for postweaning gain examined. Year effects were significant (P less than .001) for all traits in Herefords and for postweaning gain in Angus. Postweaning gain of both breeds increased in successive years, but no trend was observed for birth and 200-d weights. Bulls were heavier than heifers (P less than .05) for all three traits in both breeds. Hereford and Angus calves receiving the high-energy diet gained more (P less than .001) than their contemporaries fed the medium-energy diet. Sire differences were significant for birth weight in Herefords and for all three traits in Angus. Sire x diet interactions were not significant for postweaning gain in either breed. Genetic correlations were calculated by two methods: the two-way ANOVA approach using sire and sire x diet interaction variance components and the one-way ANOVA approach in which gains by progeny of each sire on each diet were considered to be two distinct traits. The genetic correlations for gain in Herefords could not be estimated by either method because of negative sire variance component estimates. The genetic correlations for gain in Angus were 1.08 for the two-way ANOVA method and 1.43 +/- .64 for the one-way ANOVA method. These results indicate that sires ranked the same based on progeny performance when fed either diet.  相似文献   

7.
Variances in milk and fat yields due to herd-period-season effects (period either 6 or 12 months, and season either 1, 2 or 4 months) were partitioned fitting a three nested effects model with herd, period within herd and season within period within herd as random nested effects, sire a fixed effect and linear and quadratic regressions on age at calving. The overall effects of period and season of calving were regarded as fixed effects and were removed by precorrecting records using least squares constants estimated from the same data. Environmental correlations within herd, herd-period and herd-period-season were also estimated for all period and season groupings. Records of first lactation milk and fat yields on 25 158 progeny of 69 widely used proven Friesian-Holstein sires in 832 herds in England and Wales were used.The variance components for the effects of herd, period within herd, season within period within herd and residual accounted for 31, 6, 5 and 58% of the total variance in milk yield, and 35, 8, 7 and 50% of the variance in fat yield, respectively, using a period of 12 months and a season of 4 months. Differences amongst correlations within the same herd-period-season, fitting seasons of different lengths, were small. It was therefore concluded that shorter seasons in a herd-period-season fixed effect model of sire evaluation would be of no advantage.  相似文献   

8.
Estimates of genetic parameters resulting from various analytical models for birth weight (BWT, n = 4,155), 205-d weight (WWT, n = 3,884), and 365-d weight (YWT, n = 3,476) were compared. Data consisted of records for Line 1 Hereford cattle selected for postweaning growth from 1934 to 1989 at ARS-USDA, Miles City, MT. Twelve models were compared. Model 1 included fixed effects of year, sex, age of dam; covariates for birth day and inbreeding coefficients of animal and of dam; and random animal genetic and residual effects. Model 2 was the same as Model 1 but ignored inbreeding coefficients. Model 3 was the same as Model 1 and included random maternal genetic effects with covariance between direct and maternal genetic effects, and maternal permanent environmental effects. Model 4 was the same as Model 3 but ignored inbreeding. Model 5 was the same as Model 1 but with a random sire effect instead of animal genetic effect. Model 6 was the same as Model 5 but ignored inbreeding. Model 7 was a sire model that considered relationships among males. Model 8 was a sire model, assuming sires to be unrelated, but with dam effects as uncorrelated random effects to account for maternal effects. Model 9 was a sire and dam model but with relationships to account for direct and maternal genetic effects; dams also were included as uncorrelated random effects to account for maternal permanent environmental effects. Model 10 was a sire model with maternal grandsire and dam effects all as uncorrelated random effects. Model 11 was a sire and maternal grandsire model, with dams as uncorrelated random effects but with sires and maternal grandsires assumed to be related using male relationships. Model 12 was the same as Model 11 but with all pedigree relationships from the full animal model for sires and maternal grandsires. Rankings on predictions of breeding values were the same regardless of whether inbreeding coefficients for animal and dam were included in the models. Heritability estimates were similar regardless of whether inbreeding effects were in the model. Models 3 and 9 best fit the data for estimation of variances and covariances for direct, maternal genetic, and permanent environmental effects. Other models resulted in changes in ranking for predicted breeding values and for estimates of direct and maternal heritability. Heritability estimates of direct effects were smallest with sire and sire-maternal grandsire models.  相似文献   

9.
A 300 cow Brahman herd kept on improved pasture was subjected to a selection and management programme based on a limited breeding season. Artificial insemination using mainly progeny tested bulls was used in part of the herd and the rest were bred in single sire herds. Of the 200 sires used during the 30 year period, 82% were homebred and selected principally for high estimated breeding value of 18-month weight. Variance components of birth (BW), weaning (205 W) and 18-month (548 W) weights of 6130 calves born 1968 through to 1997 were estimated by the Restricted Maximum Likelihood method (REML) using uni- and bivariate animal models. For each weight the animal's direct and maternal genetic and the dam's permanent environmental effects were considered random and those of sex, year and month of birth and age of cow were considered fixed, but the models differed as far as the number of significant interactions included. Adjusted least squares means for BW, 205 W and 548 W were 28, 158 and 292 kg. Phenotypic and direct and maternal genetic trends from univariate analysis were for BW: 0.156, 0.061 and −0.001 kg; for 205 W: 0.471, 0.126 and 0.044 kg; for 548 W: 1.973, 0.486 and 0.251 kg per year. Direct and maternal heritabilities from univariate analyses were for BW, 205 W and 548 W, 0.33 and 0.08; 0.07 and 0.14; 0.13 and 0.08, respectively. Genetic direct-maternal correlations for the three weights were −0.37, −0.13 and 0.49 and permanent environmental variance of the dam as proportion of phenotypic variance (c2) had values of 0.03, 0.16 and 0.01, respectively. Direct and maternal genetic correlations were for BW: 205 W, 0.64 and 0.74; for BW: 548 W, 0.35 and 0.74; and for 205 W: 548 W, 0.64 and 0.96. Future genetic work in the herd should put more emphasis on the improvement of cow efficiency for sustainable beef production on native and improved pasture.  相似文献   

10.
Various environmental variables were used in analysis of genotype by environment interaction (GxE) for first lactation protein yield and days open in Swedish Red and White dairy cattle. The environmental variables described the herd level of production and fertility, herd size, geographic position, and weather conditions of the herds. Fixed effects of the environmental variables were analysed using a fixed regression sire model. All studied environmental variables, except the average rainfall during summer, had significant effect on both protein yield and days open. Possible effects of GxE were evaluated using random regression of protein yield and days open on the environmental variables. GxE was indicated between protein yield and herd level of production, protein yield and herd size, and days open and herd level of fertility. Correlations between the traits expressed at average and deviating levels of the environment were high indicating that GxE did not result in reranking of sires within the range of environments found in Sweden.  相似文献   

11.
12.
The influence of some production traits on the longevity of Polish Landrace sows was evaluated using survival analysis. Estimates of genetic parameters were obtained from the sire and animal components in linear and survival methodologies. Comparison between survival and linear models was based on heritabilities and ranking of estimated breeding values of sires. The same data set, 13 031 sows, was used for both methodologies, even in the presence of censored observations. The effects of herd*year and year*season of the first farrowing had the largest influence on the risk of culling of sows. Sows born in spring season (March–May) had a 24% (p < 0.001) lower hazard for removal than those born in winter (December–February). The age at first farrowing had a small but significant effect on culling: the hazard regression coefficient for this trait was 0.002 per day. Sows that had more piglets born alive and fewer stillborn in the first litter had a decreased risk of being culled. Within a contemporary group, slower growing gilts had decreased removal risk. The relative risk ratios show a marginal decreased rate of culling for sows with backfat thickness between 9.5 and 11 mm compared to the leaner sows. Loin depth had no effect on sow longevity. Heritability estimates ranged from 0.09 to 0.38 depending on the model and type of analysis. In survival analysis, all heritabilities for longevity were higher when analysed with sire models (0.21 and 0.38) compared to animal models (0.09 and 0.16). The use of animal or sire models in the linear analysis gave similar heritability estimates (0.12 and 0.10). Correlations between breeding values for sires were moderate and high, with absolute values from 0.51 to 0.99, depending on the model fitted and methodology. A stronger correlations within methodologies (0.83–0.99) than within models with different methodologies (0.51–0.63) were obtained.  相似文献   

13.
The importance of genotype x environment (region or management system) interactions for carcass traits in Japanese Black cattle was investigated using both univariate and multivariate animal models. The univariate approach was used mainly to test the significance of interaction effects. The multivariate approach was used to estimate genetic correlations, which indicated the magnitude of genotype x environment (GE) interactions. The more a genetic correlation deviates from 1, the larger the interaction. From the univariate approach, the addition of genotype x environment (region or management system) interaction (co)variance components resulted in an improved fit of the model for all traits in both cases (P < 0.001). However, estimates of genetic correlation between regions obtained from the multivariate approach for hot carcass weight, LM area, rib thickness, s.c. fat thickness, and marbling score were 0.97, 0.95, 0.93, 0.97, and 0.93, respectively. The corresponding estimates between management systems were 0.84, 0.92, 0.84, 0.90, and 0.97, respectively. These results indicate that GE interaction effects on carcass traits of Japanese Black cattle may be biologically unimportant. Therefore, breeding values obtained using the multivariate method would rank sires similarly in all environments. Consequently, carcass traits measured in these two different regions or management systems can be treated as the same traits.  相似文献   

14.
Non‐genetic factors influencing functional longevity and the heritability of the trait were estimated in South African Holsteins using a piecewise Weibull proportional hazards model. Data consisted of records of 161,222 of daughters of 2,051 sires calving between 1995 and 2013. The reference model included fixed time‐independent age at first calving and time‐dependent interactions involving lactation number, region, season and age of calving, within‐herd class of milk production, fat and protein content, class of annual variation in herd size and the random herd–year effect. Random sire and maternal grandsire effects were added to the model to estimate genetic parameters. The within‐lactation Weibull baseline hazards were assumed to change at 0, 270, 380 days and at drying date. Within‐herd milk production class had the largest contribution to the relative risk of culling. Relative culling risk increased with lower protein and fat per cent production classes and late age at first calving. Cows in large shrinking herds also had high relative risk of culling. The estimate of the sire genetic variance was 0.0472 ± 0.0017 giving a theoretical heritability estimate of 0.11 in the complete absence of censoring. Genetic trends indicated an overall decrease in functional longevity of 0.014 standard deviation from 1995 to 2007. There are opportunities for including the trait in the breeding objective for South African Holstein cattle.  相似文献   

15.
(1) The study was conducted to estimate the heritability, genetic correlations and breeding values of laying hens based on individual records and group mean records. (2) Records of two pure lines from a commercial breeding programme of White Leghorns from three generations housed in single cages and in group cages were used. A total of 8483 and 8817 individual records of lines A and D, respectively, and a total of 1358 (line A) and 1161 (line D) group mean records were analysed. (3) An animal model using Restricted Maximum Likelihood (REML) was used to estimate variance components of individual records. Group mean records were analysed using the sire model, taking heterogeneity of error variance and correlated residual effects into account. Breeding values of sires were estimated based on the BLUP method using a multivariate sire model. Spearman Rank correlations were used to compare sire breeding values estimated from individual records and from group mean records. The traits studied were monthly egg production, cumulative production and egg weight. (4) Heritability estimates based on individual records were higher than from group mean records. Heritabilities for cumulative production records were higher than for monthly production, based on individual as well as group mean records. The estimates of genetic correlations between monthly egg production and cumulative production were moderate to high. Egg production and egg weight recorded individually were highly genetically correlated with those recorded on group means. Sire breeding values estimated from individual records showed high correlations with those from group mean records. (5) Differences in the ranking of sire breeding values estimated from individual vs group mean records were negligible, indicating that no genotype x environment interaction exists. Selection based on individual performance records of laying hens housed in single cages could give a good response on performance of laying hens housed in group cages. Cumulative egg production over periods 1 to 6 is the best trait for the selection programme.  相似文献   

16.
First parity calving difficulty scores from Italian Piemontese cattle were analysed using a threshold mixed effects model. The model included the fixed effects of age of dam and sex of calf and their interaction and the random effects of sire, maternal grandsire, and herd‐year‐season. Covariances between sire and maternal grandsire effects were modelled using a numerator relationship matrix based on male ancestors. Field data consisted of 23 953 records collected between 1989 and 1998 from 4741 herd‐year‐seasons. Variance and covariance components were estimated using two alternative approximate marginal maximum likelihood (MML) methods, one based on expectation‐maximization (EM) and the other based on Laplacian integration. Inferences were compared to those based on three separate runs or sequences of Markov Chain Monte Carlo (MCMC) sampling in order to assess the validity of approximate MML estimates derived from data with similar size and design structure. Point estimates of direct heritability were 0.24, 0.25 and 0.26 for EM, Laplacian and MCMC (posterior mean), respectively, whereas corresponding maternal heritability estimates were 0.10, 0.11 and 0.12, respectively. The covariance between additive direct and maternal effects was found to be not different from zero based on MCMC‐derived confidence sets. The conventional joint modal estimates of sire effects and associated standard errors based on MML estimates of variance and covariance components differed little from the respective posterior means and standard deviations derived from MCMC. Therefore, there may be little need to pursue computation‐intensive MCMC methods for inference on genetic parameters and genetic merits using conventional threshold sire and maternal grandsire models for large datasets on calving ease.  相似文献   

17.
Variation in serum IgG and IgM concentration was determined in three homozygous SLA-defined strains of miniature swine (SLAa, SLAc and SLAd) and one recombinant strain SLAg (ABcDd) as part of a study of SLA and other genetic effects on immune response. Data were obtained from 119 8-week-old piglets from 29 litters by 12 sires and analyzed using a SAS linear model for the effects of SLA haplotype, sire, dam, litter, sex, season of birth and sow parity. SLA haplotype (P less than 0.10) and other genetic effects due to sire (P less than or equal to 0.001) and dam (P less than or equal to 0.002) contributed to the variation in serum IgG concentrations. Season of birth and sow parity also affected IgG concentration as did litter effects. Least squares mean comparisons indicated that pigs of the dd, dg and gg haplotypes had significantly higher serum IgG than did pigs of the other haplotypes. Heritability estimates for IgG, calculated by paternal half-sib correlation, ranged from 0.31 to 0.27, indicating that selection for increased serum IgG concentrations would be possible. For serum IgM concentrations, only the effect of litter was significant at P less than or equal to 0.001 and P less than or equal to 0.009 by the radial immunodiffusion test read at 24 or 48 h. Since sire variance components estimates were negative, heritabilities were not calculated for IgM and are assumed to be zero.  相似文献   

18.
Measures of maternal productivity and reproduction of Hereford (HH), Angus-Hereford (AH), 25% Simmental-75% Hereford (1S3H), 50% Simmental-50% Hereford (1S1H) and 75% Simmental-25% Hereford (3S1H) dams were studied. Half of each dam breed group was bred to Tartentaise and half to Charolais sires to produce 706 calves at weaning from 930 exposures to breeding in a Montana range environment. Data were analyzed according to a model that included the fixed effects of year, dam breed group, dam age, calf sex, calf sire breed, plus appropriate two-way interactions, linear partial regression on calf birth date and random effects of sire within dam breed group (maternal grandsire of the calf) and sire within calf sire breed. Calf sex interacted with calf sire breed for several traits, but interactions were due to changes of magnitude of differences between sexes. There were no significant interactions of dam breed group with other main effects for calf growth traits, except for the interaction with calf sire breed for some calf growth traits. This interaction was due to a change in magnitude; it suggested that larger sire breeds should be matched to larger dam breeds with greater potential for milk production. The only significant interaction for traits that included reproduction of the dam was dam breed group X age of dam. Ranking of dam breed groups depended on age at measurement. Differences among dam breed groups were significant for most traits. Calf weaning weights for HH, AH, 1S3H, 1S1H and 3S1H dams were 211, 223, 227, 237 and 243 kg, respectively; calf weaning weights per cow exposed were 157, 163, 179, 189 and 169 kg; calf weaning weights per unit of dam weight were .40, .41, .43, .44 and .42, respectively. Thus, dam breed groups that weaned the largest calves were not necessarily the most productive under Montana range conditions.  相似文献   

19.
Data collected by the National Livestock Research Institute of the Rural Development Administration of Korea were used to estimate genetic parameters for yearling (YWT, n = 5,848), 18-mo (W18, n = 4,585), and slaughter (SWT, n = 2,279) weights for Korean Native cattle. Nine animal models were used to obtain REML estimates of genetic parameters: DP-2 included genetic, uncorrelated dam, and residual random effects; DQ-2 included genetic, sire x region x year-season interaction, and residual random effects; DPQ-2 was based on DQ-2 but included both interaction and dam effects; DMP-2 was based on DP-2 but with dam effect partitioned to include maternal genetic and permanent environmental effects; and DMPQ-2 was based on DMP-2 but also included sire interaction effects. Those five models included two fixed factors: region x year-season and age of dam x sex effects. Models DP-3, DQ-3, DPQ-3, and DMPQ-3 were based on DP-2, DQ-2, DPQ-2, and DMPQ-2 but included as a third fixed factor whether or not identification of the sire was known. Estimates of heritability with DMPQ-3 for YWT, with DPQ-3 for W18 and SWT when analyzed with single-trait analyses were .14, .11, and .17, respectively, and were nearly the same with bivariate analyses. Estimate of maternal heritability for YWT from single-trait analysis was .04, with estimates for other traits near zero. For bivariate analyses, the estimate for YWT was .01. With single trait analysis, estimate of the direct-maternal genetic correlation for YWT was negative (-.81). Estimates of direct genetic correlations between YWT and W18, YWT and SWT, and W18 and SWT were .99, 1.00, and .97, respectively. Estimates of environmental correlations varied from .60 to .81; the largest was between W18 and SWT. Including a fixed factor for whether sire identification was missing or not missing reduced the estimate of heritability for slaughter weight. The results suggest that the sire x region x year-season interaction is important for yearling weight and may be needed in a model for slaughter weight. Maternal effects may be of slight importance for yearling weight but of no importance for W18 and SWT. Models for national cattle evaluations for Korean Native cattle for YWT should be considered that include maternal genetic and permanent environmental as well as sire x region x year-season interaction effects, but those effects seem not to be needed for models for W18 and SWT. Not much reranking of sires occurred when ranked was based on the different models for W18 and SWT.  相似文献   

20.
Genetic trends for weaning weight were evaluated in 15 purebred herds in the United States participating in the Angus Herd Improvement. Records production testing program. Regression techniques were used for separate estimates of sire and dam contributions that were summed to estimate total herd trend. Sire contributions, calculated as the pooled within sire regression of weaning weight ratio on year of calf birth, ranged from .01 +/- .23 to 1.30 +/- .24 across the herds and average .51 ratio units/yr. Dam contributions, estimated as the pooled within dam regression of offspring weaning weight ratio, deviated from the contemporary paternal half-sib average ratio, on year of calf birth, ranged from .06 +/- .06 to .68 +/- .11 and averaged .34 ratio units/yr. A positive trend in direct effects was associated with a possible negative trend in maternal effects. The annual trend within herds ranged from .21 to 1.50 ratio units and averaged .85 units over all herds, representing 1.8 kg annual genetic gain in weaning weight.  相似文献   

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