A simulation model of <Superscript>90</Superscript>Sr daily dynamics in the <Emphasis Type="Italic">soil</Emphasis>–<Emphasis Type="Italic">stand</Emphasis> system of deciduous forests

A simulation model of the ⁹⁰Sr dynamics in the soil and stand components of deciduous forest ecosystems with a 1-day step was developed; this model was used to conduct numerical experiments to clarify the mechanisms of the ⁹⁰Sr behavior. The algorithm allows one to take into account the effect of meteorological, phenological, and physiological factors on the behavior of the radionuclide and simulate different fallout conditions. The results of simulation can be used in the valuation of deciduous forest products. The model is applicable for studying the redistribution of calcium in the stand of deciduous forest ecosystems.     

Recombination around the <Emphasis Type="Italic">P</Emphasis> locus for long glume phenotype in experimental introgression lines of <Emphasis Type="Italic">Triticum aestivum</Emphasis> – <Emphasis Type="Italic">Triticum polonicum</Emphasis>

A set of experimental introgression lines of Triticum aestivum L. cv. Novosibirskaya 67 (N67)—Triticum polonicum L. line IC 12196 was developed using a small-scale bulk breeding method. The linkage map in chromosome 7A was constructed using F₂ hybrids of N67/IC12196 and 34 microsatellite markers. The P gene was flanked by the centromeric markers, Xgwm890 (18.6 cM) and Xbarc108 (20.0 cM) on the long arm of chromosome 7A. Among 124 introgression lines, 118 lines were hexaploid (2n = 6x = 42), and 6 were tetraploid (2n = 4x = 28). Among hexaploid accessions, 68 were long-glumed, whereas 50 were normal-glumed. Thirty-four polymorphic microsatellite markers were scored for either the N67 alleles or IC 12196 alleles in 124 introgression lines derived from N67/IC 12196. The UPGMA dendrogram showed five clusters; Cluster 1 mainly contained hexaploid introgression lines with long glumes. Although the alleles around the P locus were recombined with IC1296 alleles, the distal end of the chromosome contained N67 alleles. Cluster 2 mainly contained normal glumed, hexaploid introgression lines. These predominantly had the N67 alleles on the long arm of chromosome 7A and the short arm proximal to the centromere. Cluster 3 contained long-glumed, hexaploid wheat lines with relatively high level of recombination. Cluster 4 contained non-parental alleles. Cluster 5 contained the group of tetraploid wheat lines. These tetraploid lines have IC12196 alleles on both arms of chromosome 7A. The frequency spectrum of parental alleles and chromosomal blocks among introgression lines suggested that T. aestivum – T. polonicum hybridization can rapidly give rise to a new landrace due to selective introgression of the P gene.     

Are <Emphasis Type="Italic">Melilotus albus</Emphasis> and <Emphasis Type="Italic">M. officinalis</Emphasis> conspecific?

The principal economic species of the genus Melilotus are white sweet-clover (Melilotus albus) and the extremely similar yellow sweet-clover (M. officinalis). Although they are widely recognized as distinct species, some influential references in North America reduce the former to a subspecific rank or even merely a conspecific synonym of the latter. Given their importance and the large numbers of germplasm collections, the doubt needs to be resolved. This review of relevant published evidence finds that in addition to the difference in floral colour, the traditional segregation of the two as distinct species is best supported by very strong reproductive barriers as well as divergent DNA sequences in three barcoding genes. Additional but weaker confirmation of separateness is provided by studies reporting differences in external morphology, biochemistry, seed protein profiles, karyotype and DNA microsatellites.     

Taxonomic remarks on <Emphasis Type="Italic">Triticum</Emphasis> L. and ×<Emphasis Type="Italic">Triticosecale</Emphasis> Wittm.

The recent treatment of Triticum by Mac Key (2005) (broad species concept) is compared to the classical treatment by Dorofeev et al. (1979, English translation expected) (narrow species concept). A detailed infraspecific treatment was abandoned by Mac Key. Following his revision, names for many of the infraspecific taxa become obsolete. This is regarded to be a disadvantage for biodiversity and genetic resources studies. We propose maintaining ×Triticosecale Wittm. as a nothogenus, with ×T. rimpaui Wittm. for octoploid races, ×T. neoblaringhemii A. Camus for hexaploid races and ×T. semisecale (Mac Key) K. Hammer et A. Filat. (new combination) for tetraploid races.     

<Emphasis Type="Italic">Samardala</Emphasis>: specificities and changes in the ethnobotanical knowledge about <Emphasis Type="Italic">Allium siculum</Emphasis> subsp<Emphasis Type="Italic">. dioscoridis</Emphasis> (Sm.) K. Richt. in Bulgaria

Allium siculum Ucria is a perennial bulbous plant that occurs in Bulgaria as A. siculum subsp. dioscoridis (Sm.) K. Richt. The plant is locally known as “samardala”. Its herbage is used traditionally by local communities in Bulgaria as edible green and for preparation of salty spice mixtures. The study was focused on the documentation of traditional knowledge about samardala, covering local collection and cultivation practices, processing methods and consumption preferences. The respondents (aged 30–86 years, 50% over 65) were local producers and small-scale salesmen of the herbage and samardala-containing spices. To assess the health features of samardala spices the total phenol and flavonoid content was measured in home-consumed or marketed flavoured salts. Overall appreciation of the plant and related food products was found to be very high; presenting a considerable engagement of the locals in plant cultivation and gathering, laborious processing and consumption. Traditional ecological knowledge about the biology, phenology and ecology of the samardala plant and methods for its processing is still preserved by elderly people who rely mostly on their own cultivated plants. Although the introduction of modern appliances has altered the method of production, its main stages and the recipes are preserved. Modernization of the processing method has not affected the quality of the products and faster processing could be a contributing factor for the higher content of biologically active substances. Phenolic content was about twice as low as the flavonoid content, following the same pattern for all tested flavoured salts. Measures for better management of natural populations and promotion of cultivation practices of A. siculum subsp. dioscoridis would ensure the sustainable quality of traditional products as well as conservation of the natural plant resources.     

<Emphasis Type="Italic">Arnica montana</Emphasis> subsp. <Emphasis Type="Italic">atlantica</Emphasis>: Really a subspecies?

In Arnica montana L. (Asteraceae) two subspecies are described, A. montana subsp. atlantica (AMA), present only on the Iberian Peninsula and A. montana subsp. montana (AMM) with a very wide distribution area. The morphological differences between the two subspecies are small and variable. Therefore, this concept is sometimes questioned. To establish the genetic background of the two subspecies, populations of AMA and AMM together with herbarium samples and DNA Bank material of AMM were tested with 12 microsatellite markers. A. montana propagates by seeds or by clonal propagation of its rhizome. In AMA, clonality was frequent while in AMM only one case of clonality could be identified. Therefore, further results were clone-corrected. Genetically, AMA separated very well from AMM with a G_ST between the subspecies of 0.81, genetically justifying the subspecies concept of A. montana. Genetic variability in AMA (H_exp?=?0.28) was lower than in the AMM populations (H_exp?=?0.70). A somewhat higher fixation index of AMA (F_ST?=?0.17, compared to an F_ST?=?0.08 for AMM) may indicate that geneflow in AMA is a bit more restricted than in alpine AMM. However, the fixation index of AMA is not deviating from Hardy–Weinberg equilibrium. No inbreeding was observed for AMA (F_IS?=?0.10) and AMM (F_IS?=?0.08).     

Identification of unknown apple (<Emphasis Type="Italic">Malus</Emphasis> × <Emphasis Type="Italic">domestica</Emphasis>) cultivars demonstrates the impact of local breeding program on cultivar diversity

Apple (Malus?×?domestica Borkh.) trees, either abandoned or cared for, are common on the North American landscape. These trees can live for decades, and therefore represent a record of large- and small-scale agricultural practices through time. Here, we assessed the genetic diversity and identity of 330 unknown apple trees in northern Minnesota with 9 simple sequence repeat (SSR) markers. The unknown (not identified by cultivar name) trees were compared to >?1000 named cultivars in the U.S. Department of Agriculture Plant Genetic Resources Unit Malus collection and also to each other to identify repeated genotypes. Overall, the 330 unknown trees had high diversity (average H_e?=?0.75), and consisted of 264 unique genotypes. A total of 76 of the unknown trees were matched to 20 different named cultivars, and these cultivars were mainly derived from either the local breeding program at the University of Minnesota, or were Russian cultivars imported for horticulture in the northern US. This study demonstrates the importance of local breeding programs, and also the challenges associated with identifying clones in a genetically diverse crop like apple.     

Genetic mapping of the gene for brittle rachis in a <Emphasis Type="Italic">Triticum aestivum</Emphasis>—<Emphasis Type="Italic">Aegilops triuncialis</Emphasis> introgression line

Aegilops triuncialis L. (2n = 4x = 28, genome formula UUCC) has been used to obtain one of the “Arsenal collection”, the distant hybridization of Triticum aestivum L. The introgression line 124/00ⁱ, which was derived from the cross of T. aestivum ‘Rodina' with γ-irradiated pollen of an accession of Ae. triuncialis. However, undesirable genes can be incorporated into the cultivated varieties from Ae. triuncialis. The spikes of Ae. triuncialis disarticulate from stems at a single node at the bottom of the spikes. It was defined as a synaptospermic diaspore. However, the spike of 124/00ⁱ unexpectedly disarticulate below each spikelet showing wedge type of disarticulation. The brittle rachis gene Br ¹²⁴ (B rittle r achis of 124 /00 ⁱ ) of 124/00ⁱ was allelic to Br2 located on the short arm of chromosome 3A. From the microsatellite mapping, the Br ¹²⁴ gene was bracketed by Xbarc19 (20.3 cM) and Xgwm779.1(14.3 cM) on the short arm of chromosome 3A. The present study suggested that the dominant mutation from synaptospermic diaspore to wedge type disarticulation occurred in the gamete of Ae. triuncialis when Ae. triuncialis pollen was treated with γ-irradiation.     

Inflorescence-visiting insects of a functionally dioecious wild grapevine (<Emphasis Type="Italic">Vitis vinifera</Emphasis> subsp. <Emphasis Type="Italic">sylvestris</Emphasis>)

The wild grapevine [Vitis vinifera L. subsp. sylvestris (Gmelin) Hegi] is the Eurasian dioecious ancestral form of mostly monoecious domesticated cultivars (Vitis vinifera subsp. vinifera). There are different hypotheses about grapevine pollination, varying from insect to wind pollination to spontaneous self-pollination. The aim of this paper is to update our knowledge on the biology of the wild grapevine by studying the insects visiting their inflorescences. During the fieldworks, floral visitors were observed, captured and identified. The most frequent insects visiting both sexes of wild grapevine were beetles (55%) followed by bees (45%). The present study shows that although in vineyards the wind may play a role in the cross-pollination, insects can contribute to the reproductive success of the wild grapevine. The knowledge of inflorescence-visiting insects, which potentially can act as pollinators may represent an important contribution to the conservation perspective of wild grapevine.     

Karyotypic studies on <Emphasis Type="Italic">Campanumoea</Emphasis> (Campanulaceae)—endemic to China

Radix Campanumoeae (C. javanica Bl.) has been used in Miao herbal medicine to treat neurasthenia and consumptive disease for hundreds of years. Though Radix Campanumoeae shows great potential for utilization in medical studies, this herb crop has not been cultivated industrially in China. Many species in the Campanumoea genus are similar in phenotype; therefore, a karyotypic study would prove useful for clearly distinguishing Radix Campanumoeae from related species within the same genus, for germplasm preservation and for breeding Radix Campanumoeae. 10 accessions of four species in this genus and 5 accessions in 5 relative genera from SCSB were used for karyotype determination. The results showed a karyotype of 2n = 16 = 2m + 12sm + 1st in Campanumoea, and a karyotype of 2n = 18 = 6 m + 12sm in Cyclocodon. Based on the chromosome number and the karyotypic formula, we suggest that the Campanumoea genus can be divided into two genera, which is in agreement with results observed from pollen morphology and from homological usage in Chinese herbal medicine. The chromosome length in C. javanica subsp. javanica and C. javanica subsp. japonica Makino, ranged from 2.24 to 1.38 μm and 2.04 to 1.31 μm, respectively; and their haploid sets were almost identical (13.15 and 13.16 μm, respectively). This indicates that chromosomal rearrangements occur within chromosomes IV, V and VII without a net gain or loss of genetic material.     

Changes of gene expression in early generations of the synthetic allotetraploid <Emphasis Type="Italic">Cucumis</Emphasis> × <Emphasis Type="Italic">hytivus</Emphasis> Chen et Kirkbride

Changes of gene expression played an important role in the evolution of plant allopolyploids. Frequency, time and type of the changes of gene expression between the first two self-pollinated generations (S₁ and S₂) of a synthesized allotetraploid Cucumis × hytivus Chen et Kirkbride and in its diploid parents was analyzed with cDNA-AFLP and reverse-Northern blot technique. Sequences similarity of genes involved in changed expression were also analyzed with BLAST package. The results from cDNA-AFLP analysis showed that 36 (3.37%) genes showed silencing (27) or activation (9) in allotetraploids. These changes initiated in S₁ or S₂ generation. The silenced/activated genes included rRNA and protein-coding genes. Further reverse-Northern blot analysis validated the results obtained. Thus four types of changes of gene expression were observed, including silencing of genes from both parents, maternal parent, paternal parent, and genes novel expression. The results indicate rapid changes in gene expression in early generations of C. × hytivus, which contributed to the evolution of this synthetic allotetraploid.     

Comparison of the efficiency of A–PAGE and SDS–PAGE,ISSRs and RAPDs in resolving genetic relationships among <Emphasis Type="Italic">Triticum</Emphasis> and <Emphasis Type="Italic">Aegilops</Emphasis> species

Species that belong to the genus Triticum L. and the genetically related Aegilops L. genus are important genetic and economic resources because they have an evolutionary relationship with the two main agricultural crops T. aestivum (bread wheat) and T. durum (durum wheat). Therefore, it is important to understand the genetic relationships among the cultivated wheat species and their wild relatives. The latter have a great role in the improvement of cultivated wheat. Molecular markers are the best choice and most reliable means to study these relationships accurately. In this study, we compared the efficiency of the biochemical methods A–PAGE and SDS–PAGE on seed storage proteins and the molecular methods RAPDs and ISSRs to explore the genetic relationships among seven species of Triticum and 20 Aegilops species. Three phylogenetic trees obtained in this study were compared with available classifications and phylogenetic trees constructed earlier for these species. It was noted that the tree based on ISSRs data was the most congruent with those classification and trees. This may be attributed to the fact that ISSRs is more specific, and therefore more reliable. This study is the first to study genetic relationships among all species studied here using biochemical and molecular techniques.     

The introgression of 2× 1EBN <Emphasis Type="Italic">Solanum</Emphasis> species into the cultivated potato using <Emphasis Type="Italic">Solanum verrucosum</Emphasis> as a bridge

Wild diploid Solanum species with an endosperm balance number (EBN) of one are a rich source of disease resistance, pest resistance, and tuber quality traits. They are not sexually compatible with 4× 4EBN or 2× 2EBN forms of the cultivated potato. In this study, the wild 2× 2EBN Mexican species S. verrucosum (ver) was used as a bridge species to access 2× 1EBN germplasm. Hybrids (V1) were created between ver as a female parent and the 1EBN species S. cardiophyllum, S. chancayense, S. commersonii, and S. trifidum. Most of the V1 hybrids were successfully crossed as females to cultivated 2× 2EBN clones. However, due to stylar barriers, reciprocal crosses were unsuccessful. Additional studies are underway to determine the effectiveness of ver as a bridge to introgress specific traits from 2× 1EBN germplasm into the cultivated potato.     

Relationships between soil–litter interface enzyme activities and decomposition in <Emphasis Type="Italic">Pinus massoniana</Emphasis> plantations in China

Purpose

Enzyme activities in decomposing litter are directly related to the rate of litter mass loss and have been widely accepted as indicators of changes in belowground processes. Studies of variation in enzyme activities of soil–litter interface and its effects on decomposition are lacking. Evaluating enzyme activities in this layer is important to better understand energy flow and nutrient cycling in forest ecosystems.

Materials and methods

Litter decomposition and the seasonal dynamics of soil–litter enzyme activities were investigated in situ in 20- (younger) and 46-year-old (older) Pinus massoniana stands for 540 days from August 2010 to March 2012 by litterbag method. We measured potential activities of invertase, cellulase, urease, polyphenol oxidase, and peroxidase in litter and the upper mineral soils, and evaluated their relationships with the main environment factors.

Results and discussion

Remaining litter mass was 57.6 % of the initial weights in the younger stands and 61.3 % in the older stands after 540-day decomposition. Levels of enzyme activity were higher in the litter layer than in the soil layer. Soil temperature, litter moisture, and litter nitrogen (N) concentration were the most important factors affecting the enzyme activities. The enzyme activity showed significantly seasonal dynamics in association with the seasonal variations in temperature, water, and decomposition stages. Remaining litter dry mass was found to be significantly linearly correlated with enzyme activities (except for litter peroxidase), which indicates an important role of enzyme activity in the litter decomposition process.

Conclusions

Our results indicated the important effects of biotic (litter N) and abiotic factors (soil temperature and litter moisture) on soil–litter interface enzyme activities. Overall significant linear relationship between remaining dry mass and enzyme activities highlighted the important role of enzyme activity in affecting litter decomposition processes, which will further influence nutrient cycling in forest ecosystems. Our results contributed to the better understanding of the mechanistic link between upper soil–litter extracellular enzyme production and litter decomposition in forest ecosystems.

     

<Emphasis Type="Italic">Macrotyloma axillare</Emphasis> and <Emphasis Type="Italic">M. uniflorum</Emphasis>: descriptor analysis,anthocyanin indexes,and potential uses

The purpose of this study was to characterize and identify potential new uses for perennial horsegram (Macrotyloma axillare) and horsegram (M. uniflorum) germplasm in the USDA, ARS collection. Seven morphological and yield parameters were studied in 11 M. axillare and 32 M. uniflorum accessions. A wide variation was found in stem branching, foliage, plant height, seed number, and seed weight. Leaf anthocyanin indexes were significantly higher than control flowers from PI 345729. Phytochemical traits exist in both species for potential use as nutraceuticals, forage, and food for humans.     

Are <Emphasis Type="Italic">Lotus creticus</Emphasis> and <Emphasis Type="Italic">Lotus cytisoides</Emphasis> (Leguminosae) closely related species? Evidence from nuclear ribosomal ITS sequence data

Lotus creticus is a potentially important perennial legume for soil management in the Mediterranean climate. This plant is in focus of experimental research in different countries. The so-called Lotus creticus group is taxonomically problematic. Although some authors consider all members of the group as a single variable species, others segregate several species distinct from L. creticus, especially L. cytisoides. Recent morphological studies suggested that L. creticus and L. cytisoides are taxonomically distinct at specific level and not even closely related to each other. Two molecular phylogenetic studies published so far and based on one accession of L. creticus each gave conflicting results on relationships of this species. In this paper, sequences of nuclear ribosomal ITS (nrITS) are produced from multiple accessions of both L. creticus and L. cytisoides. Taxonomic identity of each accession has been tested using morphology. The new nrITS sequences are inserted in a data matrix containing a representative set of Lotus species covering all the geographical range and all major taxonomic groups of Lotus. Phylogenetic analysis of nrITS sequence data showed that L. creticus is related to L. assakensis and other species of the section Pedrosia while L. cytisoides is related to L. longisiliquosus and other species of the section Lotea. These results are important for establishing future germplasm collection, breeding and selection programs of perennial Lotus species.     

Microsatellite genotyping of apple (<Emphasis Type="Italic">Malus</Emphasis> × <Emphasis Type="Italic">domestica</Emphasis> Borkh.) genetic resources in the Netherlands: application in collection management and variety identification

A highly informative set of 16 microsatellite markers was used to fingerprint 695 apple accessions from eight Dutch collections. Among the total sample, 475 different genotypes were distinguished based on multi-locus microsatellite variation, revealing a potential redundancy within the total sample of 32%. The majority of redundancies were found between collections, rather than within collections. No single collection covered the total observed diversity well, as each collection consisted of about 50% of unique accessions. These findings reflected the fact that most collection holders focus on common Dutch varieties, as well as on region-specific diversity. Based on the diversity patterns observed, maintenance of genetic resources by a network of co-operating collection holders, rather than by collecting the total diversity in a single collection appears to be an efficient approach. Comparison of microsatellite and passport data showed that for many accessions the marker data did not provide support for the registered variety names. Verification of accessions showed that discrepancies between passport and molecular data were largely due to documentation and phenotypic determination errors. With the help of the marker data the varietal names of 45 accessions could be corrected. Microsatellite genotyping of apple appears to be an efficient tool in the management of collections and in variety identification. The development of a marker database was considered relevant as a reference instrument in variety identification and as a source of information about thus far unexplored diversity that could be of interest in the development of new apple varieties.     

Chromosome and genome composition of a <Emphasis Type="Italic">Triticum</Emphasis> × <Emphasis Type="Italic">Thinopyrum</Emphasis> hybrid by classical and molecular cytogenetic techniques

Triticum–Thinopyrum amphiploids arose from the need to obtain forage grasses highly resistant to pest, drought, soil salinity and frost and they can be used as efficient bridges to transfer desired genes from wheatgrass species to wheat. One of them is trigopiro SH16 INTA, it was introduced in Argentina in 1947 but its genomic composition was unknown. The aim of this work was to determine the chromosome number and genomic and chromosome composition of trigopiro SH16 INTA in order to use it in breeding programs. The simultaneous use of the in situ hybridization technique with different probes (genomic DNA of Th. ponticum (Podp.) Barkworth et D.R. Dewey, pSc119.2 and pAs1) allowed us to conclude that the chromosome number of trigopiro SH16 is 2n = 42 and the genome composition would be: 14 chromosomes of the B genome, the 2D and 4D chromosome pairs of wheat, 14 chromosomes of the J genome of Thinopyrum and the remaining chromosomes probably belong to the A genome of wheat.     

Relationships in the <Emphasis Type="Italic">Diplotaxis–Erucastrum–Brassica</Emphasis> complex (Brassicaceae) evaluated from isoenzymatic profiles of the accessions as a whole. Applications for characterisation of phytogenetic resources preserved <Emphasis Type="Italic">ex situ</Emphasis>

Electrophoresis has become one of the most usual tools for plant studies. However, most analyses, using isoenzymes, have been carried out from a population geneticist’s point of view for the study of allelic frequencies. In present work, isoenzyme electrophoresis of bulked seeds was used as a rapid strategy for obtaining the electrophoretic profiles of accessions of a seed bank. The relationships amongst 30 taxa of the complex Diplotaxis-Erucastrum-Brassica (Brassicaceae family, tribe Brassicinae) were analysed, with the electrophoretic profiles of six isoenzyme systems. Each sample presented a stable and characteristic isoenzymatic pattern representative of the whole population. The enzyme markers provided 147 reliable bands which were scored as multistate traits (not with allelic value). UPGMA clustering method showed a dendrogram with three main groups and subgroups of samples that are in agreement with the recognised taxonomy of the taxa. This approach can be a rapid and efficient method to establish the specific enzyme patterns of conserved species populations of a germplasm bank, and the information could be included in the a database as part of documentation system.     

<Emphasis Type="Italic">Lophopyrum</Emphasis> Á. Löve (1980), <Emphasis Type="Italic">Thinopyrum</Emphasis> Á. Löve (1980), <Emphasis Type="Italic">Trichopyrum</Emphasis> Á. Löve (1986): one,two or three genera? A study based on the nuclear 5S DNA

Many species included in the genera Lophopyrum (Á. Löve 1980), Thinopyrum (Á. Löve 1980), and Trichopyrum (Á. Löve 1986) provide germplasm that can be used by breeders to improve commercial wheat cultivars through breeding programs. But various authors have classified them differently, placing them into one, two, three or even more genera. This lack of definition raises the question posed in the title; namely, one, two or three (or more) genera? To answer this question we created a data set of 480 5S nrDNA sequences from 15 species commonly assigned to one or more of these genera by different authors. Based upon the observed variation in DNA sequence of the 5S nrRNA gene mainly within the non-transcribed spacer region, sequences can be summarized into groups or classes of 5S nrDNA that we named unit classes. Unit classes can be assigned to different haplomes within the Triticeae tribe providing a means to study genome composition and species diversity among other ends. These results, where the species were defined on the basis of haplome composition, would then be used to test hypotheses that these species can be placed within a single genus or not. Contingent upon our analyses, we found that haplome composition does not follow the previously proposed taxonomies, based on cytogenetic data, and therefore that all 15 species investigated form one single genus.