Artificial dispersal of endangered epiphytic lichens: a tool for conservation in boreal forest landscapes

Due to increasing fragmentation of the boreal forests of Fennoscandia, a number of epiphytic lichens are now becoming threatened. Since these species typically are limited by a poor ability of dispersal, one possible but largely unexplored strategy for conservation is to disperse lichen material artificially into suitable habitats. Therefore, the objective of this study was to evaluate survival and vitality in lichen fragments from Evernia divaricata (L.) Ach. and Ramalina dilacerata (Hoffm.) Hoffm. after transplantation into three different stand types situated in northern Sweden, using different fragment sizes and modes of transplantation. After one year, survival ranged between 85% and 97.5%, and new growth occurred at all transplantation sites. The study has shown that transplantations of small fragments might constitute a resource-efficient option for establishment of new populations of endangered lichen species, or for enlarging their populations at the present sites of occurrence. In addition, the mode of transplantation was of importance for fragment vitality.     

Natural history collections and the conservation of poorly known taxa: Ecological niche modeling in central African rainforest genets (Genetta spp.)

Natural history collections are crucial resources for conservation biology, particularly given the development of the ecological niche modeling (ENM) approach. We combined ENM with taxonomic investigations to address ecological, geographic, and phenotypic variation in the poorly known central African rainforest genets (Genetta cristata, Genetta servalina, Genetta victoriae) to provide new insights into their conservation status. Taxonomic identification was based on four discrete morphological characters. ENMs were developed using the Genetic Algorithm for Rule-Set Prediction (GARP), 10 environmental data layers and 310 georeferenced localities extracted from 667 museum specimens and 22 literature sources. Re-assessed taxonomic identifications allowed us to expand significantly the known range and ecological limits of the three genets. We suggested limited hybridization between G. cristata and G. servalina, in a zone of sympatry likely to cover central Cameroon, northwestern Gabon and Congo. ENM showed that almost all known occurrences were connected geographically by suitable ecological conditions, suggesting continuous potential distributions between supposedly isolated populations of the three genets. Our investigations indicated that G. cristata is distinct from G. servalina in morphology, geographic ranges and ecological niches, indicating species status for G. cristata, which, as such, should be the subject of appropriate conservation attention. Areas of predicted connectivity and actual zones of occurrence falling outside current forest cover should be surveyed to re-assess the status of the rainforest genets. Our study shows that combining ENM and taxonomic investigations can substantially improve data utilization from natural history collections, especially in the case of poorly known species.     

Inorganic and organic phosphorus pools in earthworm casts (Glossoscolecidae) and a Brazilian rainforest Oxisol

We compared differences in soil phosphorus fractions between large earthworm casts (Family Glossoscolecidae) and surrounding soils, i.e., Oxisols in 10 year-old upland agroforestry system (AGR), pasture (PAS), and secondary forest (SEC) in the Central Brazilian Amazon. AGR and PAS both received low-input fertilization and SEC received no fertilization. We found that earthworm casts had higher levels of organic hydroxide P than surrounding soils, whereas fertilization increased inorganic hydroxide P. Inorganic P was increased by fertilization, and organic P was increased by earthworm gut passage and/or selection of ingested materials, which increased available P (sum of resin and bicarbonate fractions) and moderately available P (sum of hydroxide and dilute acid fractions), and P fertilizer application and land-use increased available P. The use of a modified sequential P fractionation produced fewer differences between earthworm casts and soils than were expected. We suggest the use of a condensed extraction procedure with three fractions (Available P, Moderately Available P, and Resistant P) that provide an ecologically based understanding of the P availability in soil. Earthworm casts were estimated to constitute 41.0, 38.2, and 26.0 kg ha⁻¹ of total available P stocks (sum of resin and bicarbonate fractions) in the agroforestry system, pasture, and secondary forest, respectively.     

Population demography and fecundity do not decline with habitat fragmentation in the rainforest tree Macadamia integrifolia (Proteaceae)

Habitat fragmentation is often associated with reduced levels of fitness and local extinction of plant species, and consequently poses a major threat to the persistence of species worldwide. The majority of demography-based fragmentation studies to date have focussed primarily on fragmentation impacts on individual plant fecundity. Here we investigate the impact of habitat fragmentation on the demography (plant height classes and density) and key population dynamic processes for the rainforest tree species Macadamia integrifolia (Proteaceae). Raceme and fruit production and seedling emergence across fragmented sites exceeded that in more intact sites with no apparent difference in short-term mortality rates. Fecundity of flowering trees did not appear to be affected by fragmentation. Instead, overall reproductive output in fragmented sites was enhanced relative to undisturbed sites due to a higher proportion of reproductively active individuals. The probability of flowering and fruiting was negatively correlated with the projected foliage cover (PFC) surrounding individual trees, and average PFC was significantly lower in small and medium fragments, suggesting light availability as a potential contributor to the trends observed here.This study demonstrates that the short-term effects of habitat fragmentation on population viability may not necessarily be detrimental for some species, and highlights the importance of assessing not only the fecundity of flowering individuals but also the proportion of individuals reproducing within fragments.     

Survival and plasmid stability of rhizobia introduced into a contaminated soil

The behaviour of Rhizobium strains introduced separately into soil from a contaminated site with high concentrations of heavy metals (mainly Zn and Hg), and the role of plasmids in the ecology of these rhizobia strains were studied. Six Rhizobium leguminosarum biovar trifolii strains, from different sources and with different plasmid contents, were selected. Two of them were isolated from nodules of subterranean clover plants (Trifolium subterraneum) grown in the contaminated soil and four were from an uncontaminated soil. After inoculation with approximately 10⁷ cells g⁻¹ soil, of each strain, survival and plasmid stability were assessed over a period of 12-18 months. Differences in survival of Rhizobium strains were only detected more than 12 months after inoculation. After 18 months it was clear that survival in contaminated soil was greatest in the two strains originally isolated from that contaminated soil, and also by two of the strains originally isolated from uncontaminated soil. The latter two strains were also the only ones that showed changes in their plasmid profiles. The remaining isolates had the lowest populations, and their plasmid profiles were unchanged and similar to the parent strains.     

Fungal colonization as affected by litter depth and decomposition stage of needle litter

The present study was designated to evaluate the relative effects of litter depth and decomposition stage of needles on fungal colonization of needle litter in field experiments. The experiment was carried out in coniferous temperate forests in central Japan. Needle litter of Chamaecyparis obtusa and Pinus pentaphylla var. himekomatsu at two decomposition stages (recently dead and partly decomposed) were placed into the organic layer at two depths (on the surface of and beneath the litter layer). Fungal colonization of needles after 1 year was examined in terms of hyphal abundance and frequency of fungal species. Total and live hyphal length on needles were affected by the litter depth and (or) the decomposition stage of needles. Length of darkly pigmented hyphae on needles was 1.7-2.6 times greater beneath the litter layer than on the litter surface regardless of the decomposition stage of needles. Length of clamp-bearing hyphae in Pinus pentaphylla was 5.0-5.2 times greater in partly decomposed needles than in recently dead needles regardless of the litter depth. Frequencies of Pestalotiopsis spp. and Cladosporium cladosporioides were higher on recently dead needles than on partly decomposed needles and (or) were higher on the litter surface than beneath the litter layer. Frequencies of Trichoderma, Penicillium, and Umbelopsis species generally were higher on partly decomposed needles than on recently dead needles and were higher beneath the litter layer than on the surface.     

Suppressiveness of 18 composts against 7 pathosystems: Variability in pathogen response

Compost is often reported as a substrate that is able to suppress soilborne plant pathogens, but suppression varies according to the type of compost and pathosystem. Reports often deal with a single pathogen while in reality crops are attacked by multiple plant pathogens. The goal of the present study was to evaluate the disease suppression ability of a wide range of composts for a range of plant pathogens. This study was conducted by a consortium of researchers from several European countries. Composts originated from different countries and source materials including green and yard waste, straw, bark, biowaste and municipal sewage. Suppressiveness of compost-amended (20% vol./vol.) peat-based potting soil was determined against Verticillium dahliae on eggplant, Rhizoctonia solani on cauliflower, Phytophthora nicotianae on tomato, Phytophthora cinnamomi on lupin and Cylindrocladium spathiphylli on Spathiphyllum sp., and of compost-amended loamy soil (20% vol./vol.) against R. solani on Pinus sylvestris and Fusarium oxysporum f. sp. lini on flax. From the 120 bioassays involving 18 composts and 7 pathosystems, significant disease suppression was found in 54% of the cases while only 3% of the cases showed significant disease enhancement. Pathogens were affected differently by the composts. In general, prediction of disease suppression was better when parameters derived from the compost mixes were used rather than those derived from the pure composts. Regression analyses of disease suppression of the individual pathogens with parameters of compost-amended peat-based mixes revealed the following groupings: (1) competition-sensitive: F. oxysporum and R. solani/cauliflower; (2) rhizosphere-affected: V. dahliae; (3) pH-related: P. nicotianae; and (4) specific/unknown: R. solani/pine, P. cinnamomi and C. spathiphylli. It was concluded that application of compost has in general a positive or no effect on disease suppression, and only rarely a disease stimulating effect.     

Phylogenetic diversity of endangered and critically endangered southeast Asian softshell turtles (Trionychidae: Chitra)

The intense exploitation of turtles in Asian markets has contributed to declines in turtle populations across the continent. Three-quarters of Asia’s turtles are threatened and half are endangered. A recent workshop on the Asian turtle crisis identified taxonomic studies of widespread species as a priority for research because these low risk species may include unrecognized, narrowly distributed taxa of much higher concern. Chitra indica is a widely exploited softshell turtle (family Trionychidae) found across southern Asia. Individuals from Thailand have been described as a separate species, Chitra chitra, but this has not been universally accepted, and many sources consider Chitra monotypic. Phylogenetic analysis of sequence data from the mitochondrial ND4 gene revealed three deeply divergent, monophyletic lineages within Chitra: C. indica, C. chitra, and a third unnamed form from Myanmar. This new form is probably Critically Endangered, which highlights the importance of systematic studies in determining conservation priorities.     

Understanding the decline and extinction of monarchs (Aves) in Polynesian Islands

Understanding the decline and extinction of species has become critical to conservation biology. The five monarch species of the genus Pomarea, endemic to the southeastern Pacific, are all listed as threatened. Introduced mammals and birds are believed to be responsible for their rarefaction. We analyzed the historical and current distribution of monarchs and introduced animals and found no relation between presence of Polynesian rats (Rattus exculans) and monarch distribution. There was a highly significant correlation between the arrival of the black rat (Rattus rattus) and the decline and extinction of monarch populations. The extinction of monarch populations after colonization by black rats tended to take longer on larger islands than on smaller ones. On islands without black rats, monarchs persisted even where forests have been reduced by more than 75%. After an island was colonized by black rats the number of monarch pairs with young decreased dramatically. Eggs in artificial nests placed in sites used by monarchs were only preyed upon by black rats. No eggs were preyed upon by Polynesian rats (Rattus exulans) or introduced birds. Monarch nests were mainly placed on horizontal branches inside the canopy and were more accessible than nests of Polynesian warbler (Acrocephalus caffer), a species still locally abundant. Warbler nests were placed higher up on vertical branches near the top of trees. These studies suggest that nest predation by black rats has been the main cause of monarch decline. However observations of direct aggression of adult monarchs by introduced red-vented bulbuls (Pycnonotus cafer), especially when monarchs raise their young, suggest that introduced birds could aggravate the decline of monarch populations already weakened by black rats. We discuss the practical implications of these findings for monarch conservation.     

The role of introduced mammals and inverse density-dependent predation in the conservation of Hutton's shearwater

This study investigated the impact of stoat Mustela erminea predation on the endangered Hutton's shearwater Puffinus huttoni. Breeding success of Hutton' shearwaters was significantly lower in two seasons of stoat control than in eight seasons with no control: suggesting that natural environmental variation has a greater influence on breeding success than stoat predation. Monitoring Hutton's shearwaters and mainland colonies of sooty shearwaters Puffinus griseus indicated that small colonies suffered higher predation and lower breeding success than large colonies, demonstrating that predation in these two species is inversely density dependent and explaining the low predation rates observed in the very large Hutton's shearwater colonies. The presence of another introduced predator, feral pigs Sus scrofa, within six extinct colonies of Hutton's shearwaters and at the boundaries of the two extant colonies, strongly suggests that this species was responsible for the historic contraction in breeding range. Controlling stoats within the two remaining colonies is unlikely to assist in the conservation of Hutton's shearwater. Conservation efforts would be better spent protecting the two remaining colonies from pigs and in trying to establish new breeding sites.     

Habitat selection of endangered and endemic large flying-foxes in Subic Bay, Philippines

Large flying-foxes in insular Southeast Asia are the most threatened of the Old World fruit bats due to high levels of deforestation and hunting and effectively little local conservation commitment. The forest at Subic Bay, Philippines, supports a rare, large colony of vulnerable Philippine giant fruit bats (Pteropus vampyrus lanensis) and endangered and endemic golden-crowned flying-foxes (Acerodon jubatus). These large flying-foxes are optimal for conservation focus, because in addition to being keystone, flagship, and umbrella species, the bats are important to Subic Bay’s economy and its indigenous cultures. Habitat selection information streamlines management’s efforts to protect and conserve these popular but threatened animals. We used radio telemetry to describe the bats’ nighttime use of habitat on two ecological scales: vegetation and microhabitat. The fruit bats used the entire 14,000 ha study area, including all of Subic Bay Watershed Reserve, as well as neighboring forests just outside the protected area boundaries. Their recorded foraging locations ranged between 0.4 and 12 km from the roost. We compared the bats’ use to the availability of vegetative habitat types, riparian areas, and bat trees. The fruit bats’ locations showed a preference for undisturbed forest types and selection against disturbed and agricultural areas. Bat locations also showed selection for particular fruiting/flowering bat trees. The bats showed strong preference for riparian areas; locations were in riparian areas over four times more than expected. From these results we recommend that management focus flying-fox conservation efforts on undisturbed forest and riparian areas.     

Prey depletion caused by overfishing and the decline of marine megafauna in eastern Ionian Sea coastal waters (central Mediterranean)

Surveys primarily aimed at determining dolphin encounter rates were conducted from small inflatable craft in eastern Ionian Sea coastal waters between 1997 and 2004. During 633 surveys totalling 21,276 km of effort, observations of cetaceans and other marine species spotted in a study area of 480 km² were systematically recorded. Common dolphin encounter rates declined 25-fold across the study period, steadily decreasing from 2.18 encounters/100 km in 1997 to 0.09 encounters/100 km in 2004. Encounter rates of tuna also declined significantly. Swordfish encounter rates dropped from 1.03 encounters/100 km in 1997 to 0-0.12 in 1998-2004. Encounter rates of bottlenose dolphins did not show significant trends. The decline of high-order marine predators feeding on epipelagic prey was consistent with the hypothesis of prey depletion, likely resulting from intensive exploitation of local fish stocks, particularly anchovies and sardines. The catholic feeding habits and opportunistic behaviour of bottlenose dolphins may allow them to withstand the effects of overfishing at their present low density.     

The recent decline of a New Zealand endemic: how and why did populations of Archey's frog Leiopelma archeyi crash over 1996-2001?

Dramatic changes have been documented in New Zealand's vertebrate faunas since human settlement, involving major declines and extinctions, but over recent years few species have declined in numbers so rapidly as the terrestrial Archey's frog Leiopelma archeyi (Anura: Leiopelmatidae). Long-term monitoring over more than 20 years revealed a major population reduction of the species over 1996-2001 and L. archeyi is now classified as Nationally Critical under the New Zealand threat classification system. The decline progressed northwards in the Coromandel ranges, and mostly larger (female) frogs survived. On a 100 m² study plot at Tapu Ridge, annual population estimates averaged 433 frogs (SE ±32) over 1984-1994, declining by 88% to average 53 frogs (SE ±8) over 1996-2002. A mean annual survival rate of 82% for most years declined to 33% over 1994-1997. There is mounting evidence to suggest that disease is the major agent of decline, supported by (1) the rapidity and severity of decline, (2) the progressive (south to north) nature of decline, and (3) finding frogs with chytriodiomycosis from Batrachochytrium dendrobatidis at the time of decline. Surprisingly, sympatric populations of the semi-aquatic Leiopelma hochstetteri have not declined dramatically, nor has a western population of L. archeyi at Whareorino, despite chytridiomycosis occurring in some frogs there. Sustaining and restoring populations of L. archeyi in New Zealand raises major challenges for conservation management.     

Temperature sensitivity of soil respiration is affected by prevailing climatic conditions and soil organic carbon content: A trans-China based case study

Understanding the spatial variation of temperature sensitivity (i.e. Q₁₀) of soil respiration (R_s) and its controlling factors, is critical to improve the precision of carbon budget estimations at regional scales. In this study, data from 2-3 continuous years of R_s measurements over 15 ecosystems of ChinaFLUX were summarized to analyze the response of R_s to soil temperature. Moreover, we improved our dataset by collecting previously published Q₁₀ values from 34 ecosystems in China. The ecosystems studied were located in the main climatic zones of China, spanning from alpine via temperate to tropical. Spatial variations of Q₁₀ and its controlling factors were analyzed. The results showed that soil temperature at a 5 cm depth satisfactorily explained the seasonal variations in R_s of the 15 ChinaFLUX ecosystems (R² varying from 0.37 to 0.83). Based on the overall data, the Q₁₀ values of R_s in China ranged from 1.28 to 4.75. The spatial variations in Q₁₀ were primarily determined by soil temperature during measurement periods, soil organic carbon (SOC) content, and ecosystem type. Ecosystems in colder regions and with higher SOC content had relatively higher Q₁₀ values. Moreover, ecosystems of different vegetation types showed different Q₁₀ values. A temperature- and SOC-dependent function for Q₁₀ is suggested, which could be a valuable reference for improving the regional-scale models of R_s and ecosystem carbon cycles.     

Pollination of the invasive exotic shrub Lupinus arboreus (Fabaceae) by introduced bees in Tasmania

Exotic plant invasions threaten ecological communities world-wide. Some species are limited by a lack of suitable pollinators, but the introduction of exotic pollinators can facilitate rapid spread. In Tasmania, where many non-native plants are naturalised, exotic honeybees (Apis mellifera) and bumblebees (Bombus terrestris) have become established. We determined how these species affect the pollination of Lupinus arboreus, an invasive, nitrogen-fixing shrub, which is rarely visited by native pollinators. The proportion of flowers setting seed and the number of ovules fertilised per flower were positively related to the visitation rates of both exotic bee species. There was no effect of bee visitation rates on the proportion of seeds aborted prior to maturity, possibly due to post-fertilisation environmental constraints. We conclude that the spread of B. terrestris may not alter the fecundity of L. arboreus because of the pollination service provided by A. mellifera, and discuss potential interactions between these two bee species.     

Underestimated and severe: Small mammal decline from the forests of south-eastern Australia since European settlement, as revealed by a top-order predator

In Australia, numerous small mammal species have suffered extinction or severe declines in distribution and abundance following European settlement. The extent of these declines from forested areas of south-eastern Australia, however, remains poorly understood. In this paper we use sub-fossil deposits of the sooty owl (Tyto tenebricosa tenebricosa) as a tool for understanding the diversity of the small mammal palaeocommunity. These results are compared to the contemporary sooty owl diet from the same geographical region to investigate the degree of small mammal decline following European settlement.Of 28 mammal species detected in sub-fossil deposits and considered prey items of the sooty owl at the time of European settlement, only 10 species were detected in the contemporary sooty owl diet. Numerous small mammal species have not only recently suffered severe declines in distribution and abundance but have also recently undergone niche contraction, as they occupied a greater diversity of regions and habitats at the time of European settlement. For some species our understanding of their true ecological niche and ecological potential is therefore limited. The species that underwent the greatest declines occupied open habitat types or were terrestrial. The severity of decline is also likely to have resulted in severe disruption of ecosystem functions, with wide scale ecosystem consequences. There is an urgent need to improve small mammal conservation, to maintain crucial ecosystem functions performed by small mammals. It is recommended that broad-scale exotic predator control programs are conducted which may also provide suitable conditions for the re-introduction of locally extinct species.     

Monitoring the performance of wild-born and introduced lizards in a fragmented landscape: Implications for ex situ conservation programmes

Ex situ conservation of animal populations may benefit from captive-breeding programmes, but these are criticised because they are assumed to be difficult, time-consuming and expensive, while they do not guarantee success. However, such assumptions remain untested in most organisms; for example, introductions could be very useful for recovering populations of small-sized species with short generation time, no learned behaviours, and ease to rear in captivity. Here, we document an easy, cheap and successful reintroduction programme of the lacertid lizard Psammodromus algirus. Two captive-bred cohorts (178 juveniles in 2001 and 187 in 2002) were released in four woodland fragments (0.9-5.2 ha) at two localities (B and V); B housed a stable lizard population whereas V apparently lacked a viable population of lizards. We monitored introduced and native lizards during 2002 and 2003, and carried out a corroborative searching in 2006 which confirmed the existence of a lizard population at site V. Introduced lizards had higher activity and dispersed more frequently among woodland fragments than native ones. Survivorship and growth rates were similar for both groups, but introduced juveniles were about 25% larger than native ones, due to both early hatching and better rearing conditions. The whole procedure was easily implemented in our Faculty facilities (mean hatching and hatchling survival rates of 0.90 and 0.87), and cost less than 20,000 € (excluding salaries). Therefore, similar programmes may be of wide application in small animals and of practical importance for species with a meta-population structure living in fragmented landscapes.     

Linking process to pattern: Causes of stream-breeding amphibian decline in urbanized watersheds

Sufficient data have been collected to document negative effects of urbanization on many abiotic parameters, aquatic insects, and fish. Recently, stream-breeding salamanders have been observed to decrease in density in urban areas. We employed a two-step process to determine the mechanism(s) most likely responsible for salamander decline in disturbed streams. First, we conducted a 2-year survey of larval two-lined salamanders (Eurycea cirrigera) and abiotic variables among 12 streams in western Georgia, USA surrounded by land disturbed by urbanization and pasture. From these surveys we constructed hypotheses that might explain differences in observed larval salamander density among streams. A model in which increased watershed impervious surface causes an increase in spate (i.e., high water flow) frequency and magnitude, which then leads to decreased larval density had the most support. This analysis led to a second step in which we conducted an experiment using artificial streams lined with substrates commonly found in urban and forested streams (sand/sand with detritus and gravel-pebble/pebble-cobble, respectively). We placed salamander larvae in the artificial stream channels and subjected them to increasing water velocity. Larvae on sand-based substrates common to urban streams were flushed from the artificial stream at significantly lower velocities than larvae on rock-based substrates. The experimental data were consistent with the hypothesis generated from field sampling that high water velocities in urban streams result in decreased larval retention in streams. Our result emphasizes the need for upland habitat restoration in urban areas, which will reduce run-off and improve stream habitat quality.     

Enchytraeids in a changing climate: A mini-review

The climate is undergoing rapid changes with rising atmospheric CO₂ concentration, increasing temperatures and changes in the hydrological regimes resulting in more frequent and intense drought periods. These three climate change factors will, separately and in combination, affect the biotic and abiotic components of soil communities. This paper reviews the impact of climate change on field communities of enchytraeids with special emphasis on Cognettia sphagnetorum because most relevant studies have involved this species. C. sphagnetorum prefers cold and wet environments and several studies suggest that reductions of soil moisture may have dramatic consequences for C. sphagnetorum and other enchytraeid species. Effects of changing temperatures are less clear partly because thermal conditions influence soil moisture, which complicate the predictions of the outcome from such changes. The predicted increasing annual mean temperature may be stimulating and expand the season for growth and reproduction of enchytraeids; on the other hand, an increased frequency of extreme weather events, with heat waves during summer and bare soil freezes during autumn and spring, may occasionally cause severe mortality. Stimulating effects of increased atmospheric CO₂ have been observed, perhaps due to increased food availability via root and litter production. However, effects of CO₂ are also influenced by moisture and temperature. Generally, there is a lack of research looking into the complicated interactions between various climate change factors, and little is known about the potential of enchytraeids to adapt to a changing climate. Existing data suggest that C. sphagnetorum is not capable of adapting to a drier climate, thus, a decline in abundance and distribution of this species is possible. Since enchytraeids are of ecological significance in some types of habitats, a reduction may result in serious disruption in the functioning of these decomposer communities.