Widespread introgression of Solatium phureja DNA in potato (S. tuberosum) dihaploids

Dihaploids were assumed to be of parthenogenic origin but cv. ‘Pentland Crown’ dihaploids produced at the Scottish Crop Research Institute (SCRI), Dundee, Scotland, are known to contain DNA from the S. phureja dihaploid inducer. This study investigates whether inducer DNA occurs in dihaploids of cultivars ‘Aminca’, ‘Brio’, ‘Lizen’ and ‘Sirtema’, produced at INRA, Ploudaniel, France. Two microsatellite markers and five simple sequence repeat 5′-anchored polymerase chain reaction (PCR) primers were used to generate markers. Markers originating from the dihaploid inducer were detected in 13 of the 19 INRA dihaploids and in some dihaploids from each cultivar. Greater introgression occurred in ‘Lizen’ dihaploids than in ‘Brio’ dihaploids, suggesting that the female (S. tuberosum) parent influences introgression. The percentage of INRA dihaploids containing inducer DNA was similar to that for ‘Pentland Crown’ dihaploids (c. 65%). The micro-satellite markers provided the first evidence of the transfer of specific, potentially useful, genes from the inducer to the dihaploid offspring. Interspecific introgression during dihaploid induction is more widespread than previously thought and researchers should be aware that it may influence the results of research using dihaploids.     

The development of precise genetic stocks in two wheat cultivars and their use in genetic analysis

Summary The results of genetic studies of common wheat that have been conducted in Novosibirsk, Russia, over the past 20 years by a research team are summarized. The research strategy was to develop a collection of aneuploids and substitution lines to be further used for chromosomal localization of genes and in the study of the genetic variability of wheat. On the basis of two cultivars, namely Saratovskaya 29 and Diamant, we have developed 6 sets of aneuploids with a complete set of monosomic lines for each, plus sets of lines ditelosomic and monotelosomic for standard arms. Exploiting the monotelosomics, 108 single chromosome intervarietal substitutions, 13 lines with alien substitutions (mono- and disomics) and 11 addition lines have been developed. A collection of lines isogenic for dominant marker genes of morphological characters has also been developed. The genetic collection was used in chromosomal localization of 15 genes, for many of which chromosome arms have been determined. Positively or negatively, the question of allelism within some loci has been answered.     

Genetics of self-compatibility in dihaploids of Solanum tuberosum L. 5. The S-genotype of tetraploid potato cultivar gineke

Summary Investigations of the genetics of self-compatibility and self-incompatibility in dihaploids and diploid derivatives from cv. Gineke revealed the presence of S ₁, S₂ and S ₃ at the S-locus of Gineke and in addition an S ₁-allele on a translocation. By means of a complete tester set involving the S-alleles S ₁, S₂ and S ₃ (all from Gineke) and S ₄ (from Black 4495) it was demonstrated that some Gineke dihaploids were compatible with all six testers. This indicated a fourth S-allele in Gineke, which differs from those in the tester series and was therefore assigned S ₅. Additional evidence was obtained from an analysis of F₁'s from crosses of two S ₅-bearing dihaploids and one of the testers. So the S-genotype of cv. Gineke was identified as S ₁S₂S₃S₅/S₁, the second S ₁ being the S-allele on a translocated fragment.     

Analysis of dihaploid induction and production ability and seed parent x pollinator interaction in potato

Summary The production of dihaploids is the first step in a potato breeding program at the diploid level. Dihaploid induction ability, dihaploid production ability and seed parent x pollinator interaction were analyzed for 28 × 3, seed parent x pollinator combinations. This is the first report on significant interaction between seed parents and pollinators. Despite this interaction, IVP 101 had a significantly higher dihaploid induction ability than the widely used pollinators IVP 35 and IVP 48. Previous findings on significant differences in dihaploid production ability between seed parents were clearly confirmed.     

Evaluating genetic variation and relationships among two bromegrass species and their hybrid using RAPD and AFLP markers

The two most widely grown bromegrass species in North America are smooth bromegrass (Bromus inermis Leyss.), a hay type grass, and meadow bromegrass (Bromus riparius Rehmann), a pasture type grass. Recently a hybrid bromegrass population between the two species has been produced as a dual-purpose hay-pasture grass. Molecular markers have the potential to improve selection procedures to enhance bromegrass breeding. The objective of this study was to use RAPD and AFLP markers to determine genetic relationships and variations among bromegrass populations. Forty-three RAPD markers from 21 primers and 83 AFLP markers from seven primer combinations were used. Both marker types were able to group the individuals into their respective populations. The relationships among the individuals within each of the populations were not similar between the two marker types. Analysis of molecular variance (AMOVA) detected greater within-population variation than among-population variation for both marker types. The highest variation was observed in the hybrid population followed by meadow and then smooth bromegrass. The inter-population distance from both markers indicated that the highest genetic distance was between meadow and smooth bromegrass and lowest between smooth and hybrid bromegrass, which reflect the breeding history of the hybrid population. This study showed that both markers are capable of differentiating bromegrass genotypes into their respective populations, detecting genetic variation and relationships of the populations. Results of this study suggest that these two markers can be used in the future to enhance the current breeding practices in bromegrass, however, AFLP markers would be the marker of choice due to the high number of polymorphic markers. This revised version was published online in July 2006 with corrections to the Cover Date.     

Breeding for quantitative resistance to potato cyst nematode (Globodera pallida) in tetraploid potatoes using dihaploids and unreduced gametes

Summary Dihaploids were produced from tetraploids resistant to potato cyst nematode (Globodera pallida (Stone)). High levels of resistance were found in the dihaploids and three were used to produce tetraploid progenies by crossing them with susceptible tetraploid cultivars. One dihaploid, PDH505, produced more highly resistant offspring than the other two, PDHs 417 and 418. The latter gave progenies whose levels of resistance were similar to those obtained from susceptible dihaploids crossed with resistant tetraploids.The differences between the progenies of the resistant dihaploids were probably due to different modes of unreduced gamete formation (PDH505 producing gametes by first division restitution (FDR) and PDHs 417 and 418 by second division restitution (SDR)) although cytological studies would be necessary to confirm this. The methods by which dihaploids could be utilised in a tetraploid potato breeding programme are discussed in relation to the mode of unreduced gamete formation.     

Comparison of diploid and tetraploid potato families derived from Solanum phureja x dihaploid S. tuberosum hybrids and their vegetatively doubled counterparts

Summary To determine whether in potatoes the tetraploid level is preferable to the diploid level, especially regarding tuber yield, four diploid (2n=2×=24) Solanum phureja x dihaploid S. tuberosum hybrid parents and their vegetatively doubled, tetraploid (2n=4×=48) counterparts were intermated, which resulted in two F₁ hybrid families at both levels of ploidy. The parents and clones of the F₁ families and their offspring were used in crosses in such a way that in addition Sib₁, Sib₂, F₁×Sib₁, BC₁ and Sib₁×Sib₁ families were produced. Of the first clonal generation of the 12 2 x families and their 12 counterpart 4 x families two tubers per clone were planted in three replications in a field experiment at Sturgeon Bay in 1969; of the parents six tubers were planted in each replication. Data were recorded on 16 characters, including plant height at four different times.The ANOVA's showed significant clone effects within each family for all characters. Computed from all family means as well as from the family means per ploidy level, differences due to family were also significant for all characters except one.As at the 2 x level and at the 4 x level of ploidy the mean phenotypic correlations between characters were of similar magnitude, it is concluded that they are independent of ploidy level.With the exception of eye depth, the mean coefficient of variation was greater at the 2 x than at the 4 x level of ploidy, indicating the greatest response to selection for those characters at the 2 x level. From the differences in family means between the 4 x and the 2 x level of ploidy it was apparent that the 4 x families generally had significantly taller plants, later maturity, fewer tubers, higher mean tuber weight, more tuber yield and more dry matter yield than their counterpart 2 x families. In contrast, the 4 x parents had on the average shorter plants, lower mean tuber weight, much lower tuber yield and lower dry matter yield than their 2 x counterparts.The phenotypic correlation and Spearman's rank correlation between the family means of the 2 x and the 4 x level of ploidy were positive for almost all characters and significant for nearly half of them.From the results it is concluded that 1. in potatoes the 4 x level of ploidy is preferable to the 2 x level, and 2. the performance of 4 x families is predictable from the performance of their counterpart 2 x families.Based on results mentioned in the literature and on the present results, a continued use of S. tuberosum dihaploids in potato breeding needs to be dissuaded.     

不同马铃薯品种的氮利用效率及其分类研究

以7个马铃薯品种为供试材料,设置大田条件下施氮和不施氮2种处理,在对块茎产量和植株氮素吸收、利用评价的基础上,将不同氮效率品种马铃薯分类并解析了其差异机制。基于2016年施氮和不施氮条件下各品种马铃薯的平均产量,把不同氮效率品种马铃薯分为双高效型、低氮高效型、高氮高效型和双低效型。2017年选择双高效型、低氮高效型、双低效型的代表性品种,对各类型氮效率差异进一步解析表明,双高效型氮素利用效率显著高于另两个类型,氮素吸收效率则是双高效型、低氮高效型显著高于双低效型。不施氮条件下,双高效型马铃薯的干物质累积量在整个生育时期均显著高于另2个品种;双高效型、低氮高效型氮素累积速率在出苗后0～50d显著高于双低效型马铃薯。施氮条件下,双高效型马铃薯的干物质累积量显著高于另2个品种,与双低效型马铃薯相比,双高效型和低氮高效型产量的提高主要归因于它们前期较高的干物质累积;双高效型氮素累积速率显著高于双低效型、低氮高效型。双高效型马铃薯在各生育期的物质生产和氮素吸收能力强,从而有利于氮效率提升和产量的形成。该研究结果可为马铃薯氮高效品种筛选和利用提供理论支撑。     

小麦抗条锈病基因定位及分子标记研究进展

总结了近十几年抗条锈基因的染色体定位和目前抗条锈基因分子标记研究资料及研究报告，重点介绍了抗性基因所在染色体，遗传方式，载体品种和现有分子标记，为利用抗条锈基因(Yr)的利用和研究提供参考。目前已找到分子标记的抗条锈基因有：Yr5、Yr7、Yr8、Yr10、Yr17、Yr26和Yrmoro，共获得标记14个，命名和新基因源的研究和利用工作有待加强。     

Propensity for seed-mediated gene flow from potato crops and potential consequences for the coexistence of GM and non-GM potato systems

Potato is a critical crop to European growers, both economically and agronomically as a break crop in the standard cereal rotation. As studies investigating the agronomic performance and environmental impact of disease resistant, GM potatoes come to an end across several sites in Europe, past discussions on achieving the effective coexistence of GM and equivalent non-GM crops have too often focussed on the purported risk of excessive pollen-mediated gene flow. Dependent on the crop in question, the impact of seed loss pre- and/or post-harvest presents a greater challenge to securing efficient coexistence practises. To examine this issue for potato, a total of 51 fields that had been commercially cultivated with potatoes were surveyed in two separate cohorts for post-harvest tuber loss and/or volunteer emergence. Across 17 fields studied, the average post-harvest tuber loss was recorded at 141,758 ± 911 tubers ha⁻¹, with volunteer establishment in the following crop ranging from 400 ± 59 ha⁻¹ to 55,698 ± 47 ha⁻¹. In parallel, by surveying a separate cohort of 34 commercial fields an average of 30,789 ± 2658 volunteer ha⁻¹ was recorded in the subsequent cereal crop, with a repeat survey made after an additional year indicating an 87.2% reduction in this mean number of volunteers across the 34 fields (P < 0.001). Of the additional variables studied only location (P < 0.001), herbicide application (P = 0.037) and potato variety used (P = 0.045) significantly influenced volunteer proliferation. Volunteer fecundity was confirmed with upto 3 tubers produced per 1st generation volunteer, with tuber yield from the 2nd generation volunteers reduced significantly (P < 0.001). Assessments of the tuber lots from these 2nd generation volunteers confirmed their ability to sprout post-dormancy, therefore, indicating the potential for 3rd generation volunteers to emerge. Combined, the datasets confirm the potential for significant seed-mediated gene flow from commercial potato systems; indicating that the regulated 0.9% coexistence threshold would in all probability be compromised if GM potatoes were grown in rotations of 1:4 years or less, in the absence of a comprehensive tuber loss and/or volunteer management system.     

Assessment of genetic diversity in cabbage cultivars using RAPD and SSR markers

Genetic relationship and diversity among seven cabbage cultivars were analyzed using RAPD and SSR markers. These cultivars are of great commercial value in India and are confirmed for their reaction to black rot caused by Xanthomonas campestris pv. campestris. However, so far the extent of genetic diversity and relatedness has not been studied in these cultivars. A total of 17 selected RAPD primers generated 90 bands, 76 of which were polymorphic (84.44%). In addition, 27 selected SSR primers generated 67 amplified bands with 59 of which were polymorphic (87.6%). Though both the marker techniques were able to discriminate the cultivars effectively, analysis of combined data of markers (RAPD and SSR) resulted in better distinction of cultivars. By combining both the markers, a total of 157 bands were detected of which 135 bands (85.98%) were polymorphic, i.e. an average of 5.95 bands per primer. High level of polymorphism (> 85%) recorded with two different marker systems indicated a high level of genetic variation existing among the cultivars. Genetic relationship estimated using similarity co-efficient (Jaccard’s) values between different pairs of cultivars varied from 0.21 to 0.77 in RAPD, 0.42 to 0.82 in SSR, and 0.43 to 0.89 with combined markers. A high correspondence had been recorded between the values of genetic variations generated by UPGMA, clustering, and scatter plot diagrams. The cultivars ‘January King Sel. Improved’ and ‘Golden Acre’ are highly divergent cultivars as demonstrated by both the marker systems.     

Genetics of self-compatibility in dihaploids of Solanum tuberosum L. 4. Linkage between an S-bearing translocation and a locus for virescens

Summary Three dihaploids of Solanum tuberosum (two self-compatible, one self-incompatible) were found to be heterozygous for a monogenic recessive virescent mutant. Intercrossing resulted in the expected 3 : 1 ratio only in crosses involving one self-compatible and one self-incompatible parent. Self-compatible x self-compatible matings produced F₁'s in which 6:1 was found. The same ratio was observed in the self progeny of the two self-compatible dihaploids. This significant deviation could be explained by assuming linkage (25% crossing-over) between v and an S-bearing translocation. This translocation causes self-compatibility in the dihaploids used and early lethality when homozygous.     

Inheritance of new genetic markers in lentil (Lens Miller)

Summary We report on the inheritance of 11 morphological markers and 17 isozymes in lentil (Lens culinaris). The monogenic inheritance of 11 morphological markers and 11 isozymes is confirmed. The inheritance of six isozymes (Aco-2, Enp, Est-3, Est-4, Lap-3, and Mdh-m) is reported for the first time in lentil. This brings the total number of described genes in lentil to 78. Cases of disturbed segregation were more frequent than expected by chance. It is suggested that disturbed segregation was in most cases caused by linkage with a piece of chromosome that showed preferential elimination in crosses between Lens culinaris ssp. odemensis and other subspecies. The prevalence of disturbed segregation in crosses with Lens culinaris ssp. odemensis could limit the usefulness of this subspecies in genetic and linkage studies.     

分子标记技术及其在作物育种中的应用

论文综述了分子标记的基本类型及其在作物遗传育种中的应用,分析了应用过程中存在的问题,提出了解决的方法,并讨论了其应用前景。     

Genetic diversity of late blight resistant and susceptible Indian potato cultivars revealed by RAPD markers

Twenty-four tetraploid Indian potato cultivars were characterized by using RAPD markers to assess diversity within and between late blight resistant and susceptible cultivars. Sixty-four random decamer primers generated802 fragments, ranging in size from 60–3200 bp, with 96.4% fragment polymorphism. Shannon's index of diversity was used to quantify the degree of variability present within and between the variety types. Most of the diversity was detected within variety types, with 88% of variation being within and 12% being between the resistant and susceptible cultivars. No clear groupings based on late blight resistance and susceptibility or kinship was reflected on the dendogram. The late blight resistant cultivars exhibited higher variability compared to susceptible cultivars and they were more dispersed on the PCO plot. This revised version was published online in August 2006 with corrections to the Cover Date.     

Exploring genetic diversity of rice cultivars for the presence of brown planthopper (BPH) resistance genes and development of SNP marker for Bph18

Brown planthopper (BPH) is the most devastating insect pest in rice‐growing areas. Information on availability of BPH resistance alleles and their sources enhances BPH‐resistant breeding programmes. In this study, 260 highly diversified rice cultivars or breeding lines were screened for the presence of five major BPH resistance genes (Bph10, Bph13, Bph18, Bph20 and Bph21) using gene‐specific markers. The analysis revealed that 137 of the 260 cultivars possess at least one BPH resistance gene. Bph10 was predominant while Bph20 was the least distributed. Moreover, two and three different resistance gene combinations were found in the cultivars. Molecular markers play an important role in molecular breeding programmes. A tightly linked PCR‐based co‐dominant Bph18 marker was developed, which is cost effective and time effective and simpler than available Bph18 CAPS marker (7312.T4A). We strongly believe that the identified BPH‐resistant cultivars can be used as alternative resistance gene sources and also as resource for novel BPH resistance genes. The developed Bph18 marker will be highly useful in molecular breeding applications of BPH‐resistant breeding programmes.     

Genetic diversity and structure of landrace of lablab (Lablab purpureus (L.) Sweet) cultivars in Thailand revealed by SSR markers

Lablab (Lablab purpureus (L.) Sweet) is a legume crop widely cultivated in tropical and subtropical regions of Africa and Asia. In this study, we assessed genetic diversity and population structure of 299 individuals of subspecies purpureus and bengalensis of lablab from Thailand using 13 simple sequence repeat (SSR) markers. The SSR markers detected only 34 alleles in total with a mean of 2.6 alleles per locus. Overall gene diversity was 0.360. Gene diversity (H_E) and allelic richness (A_R) in different geographic regions was comparable. Similarly, both H_E and A_R between subspecies purpureus and bengalensis were similar. STRUCTURE and neighbor-joining (NJ) analyses revealed that the 299 individuals were clustered into two major groups. In contrast, principal coordinate analysis (PCoA) revealed admixture of the lablab germplasm. STRUCTURE, NJ and PCoA analyses also revealed that the subspecies purpureus and bengalensis are not genetically differentiated. Although the number of individuals from the west of Thailand was small and all of them were collected from the same province, they possessed comparable gene diversity with those from the other geographic regions. These results demonstrated that there is moderately low genetic diversity of lablab in Thailand and the west of the country possesses high diversity of lablab.     

Improvement of diagnostic markers for resistance to Globodera pallida and application for selection of resistant germplasms in potato breeding

Occurrence of pale potato cyst nematode, Globodera pallida (Stone) Behrens, was first recorded in Japan in 2015. Among several control measures, cultivation of resistant potato (Solanum tuberosum L.) varieties is the most effective in cost and environmental impact. As no G. pallida-resistant varieties have yet been developed in Japan, great emphasis is being placed on screening of germplasm possessing the resistance and development of the resistant varieties. In this study, we first improved previously reported DNA markers linked to the G. pallida resistance loci (GpaIV^s_adg and Gpa5) and then used these to screen more than 1,000 germplasms to select several candidate germplasms with resistance. We performed inoculation testing on the selected candidates and identified several resistant germplasms to the Japanese G. pallida population. Furthermore, we developed a simultaneous detection method combining three DNA markers linked to G. pallida and Globodera rostochiensis (Wollenweber) Behrens resistance loci. We validated the ability of C237-I marker to select resistant allele of GpaIV^s_adg and predict the presence of resistance in a Japanese breeding population. Resistant germplasms identified in this study could potentially be used to develop G. pallida-resistant varieties. The marker evaluation methods developed in this study will contribute to the efficient development of resistant varieties.     

Solanum phureja genes are expressed in the leaves and tubers of aneusomatic potato dihaploids

Summary The expression of leaf isozymes and tuber patatin in dihaploids derived from the Solanum tuberosum cv. Pentland Crown was investigated. Seven of the dihaploids were aneusomatic containing additional chromosomes from the S. phureja dihaploid inducer. Of these, four genotypes expressed leaf isozymes characteristic of the S. phureja dihaploid inducer, and the tubers of three aneusomatic dihaploids contained a S. phureja form of patatin. Aneusomatic dihaploids in which the proportion of cells containing additional S. phureja chromosomes was relatively small (i.e. 1–15%) did not express leaf isozyme markers or patatin bands characteristic of the dihaploid inducer or showed only faint expression of one or two markers. However, those with a high proportion of cells containing additional chromosomes (50–55%) had a range of strongly expressed leaf isozymes that were characteristic of the dihaploid inducer and also expressed the S. phureja tuber patatin.One dihaploid genotype was exclusively euploid (2n<24), yet is expressed a S. phureja leaf isozyme marker and S. phureja tuber patatin, suggesting recombination or chromosome substitution between the genome of the S. phureja dihaploid inducer and the cultivar Pentland Crown.     

Morphology and vigour of monohaploid potato clones,their corresponding homozygous diploids and tetraploids and their heterozygous diploid parent

Summary To study the joint effects of homozygotization and polyploidization in potato, the performance has been examined of five potato genotypes at three (x, 2x, 4x) and two genotypes at two (x, 2x) ploidy levels. Six out of the seven genotypes studied were compared with their heterozygous diploid parental clone. In this way comparisons could be made between i) the heterozygous diploid and its monohaploid derivatives, ii) three or two ploidy levels per genotye and iii) homozygous di- and tetreploids and their heterozygous diploid source.Large variation could be detected between monohaploids obtained from one diploid source. A striking increase in vigour was observed with somatic chromosome doubling from x to 2x, but less clearly from 2x to 4x. The relatively vigorous diploids showed a weaker response to tetraploidization than the less vigorous ones. The heterozygous diploid exceeded all homozygous di- and tetraploid derivatives in performance. The results of this study suggest positive gene dosage effects for tuber production more than for leaf area and plant height. The observations on plant vigour in homo- and heterozygotes suggest that dominance effects are stronger than additive gene effects. Owing to sterility problems, homozygous potato clones will presumably be of little importance for practical breeding.