Impact of agriculture,forest and cloud feedback on the surface energy budget in BOREAS

We explore the impact of agriculture, forest and cloud feedback on the surface energy budget using data obtained using a research aircraft, mesonet towers and model data. The forest has an order of magnitude larger roughness length, a lower albedo, a much smaller seasonal cycle in surface Bowen ratio (BR) and a weak mid-summer maximum of CO₂ uptake compared to agricultural areas, which have much smaller BR and much higher mid-summer CO₂ uptake, but a net CO₂ release and much reduced evaporation in spring and fall. Higher surface temperatures and the higher albedo over agricultural land reduce R_net near local noon in the warm season by about 50 W m⁻² in comparison with the adjacent boreal forest. The annual averaged R_net, derived from 2 years of tower data, is 14 W m⁻² less over grass sites than over forest sites. A reanalysis time-series for the BOREAS southern study area shows the coupling on daily timescales between the surface energy partition, the mean boundary layer depth, the cloud field and the long-wave and short-wave radiation fields. The albedo of the cloud field, the cloud short-wave forcing at the surface, varies over the range 0.1–0.8 with decreasing surface BR, and plays a major role in the surface energy budget. We estimate that this cloud feedback may increase albedo by 0.13 and reduce R_net by 25 W m⁻² in summer over agricultural land.     

Earthworms as soil quality indicators in Brazilian no-tillage systems

It is well known that earthworm populations tend to increase under no-tillage (NT) practices, but abundances tend to be highly variable. In the present study, data from the literature together with those on earthworm populations sampled in six watersheds in SW Paraná State, Brazil, were used to build a classification of the biological soil quality of NT systems based on earthworm density and species richness. Earthworms were collected in 34 farms with NT aging from 3 to 27 yr, in February 2010, using an adaptation of the TSBF (Tropical Soil Biology and Fertility) Program method (hand sorting of five 20 cm × 20 cm holes to 20 cm depth). Six forest sites were also sampled in order to compare abundances and species richness with the NT systems. Species richness in the 34 NT sites and in the 6 forests ranged from 1 to 6 species. Most earthworms encountered were exotics belonging to the genus Dichogaster (D. saliens, D. gracilis, D. bolaui and D. affinis) and native Ocnerodrilidae (mainly Belladrilus sp.), all of small individual size. In a few sites, individuals of the Glossoscolecidae (P. corethrurus, Glossoscolex sp., Fimoscolex sp.) and Megascolecidae (Amynthas gracilis) families were also encountered, in low densities. Urobenus brasiliensis (Glossoscolecidae) were found only in the forest fragments. In the NT farms, earthworm abundance ranged from 5 to 605 ind m⁻² and in the forest sites, from 10 to 285 ind m⁻². The ranking of the NT soil biological quality, based on earthworm abundance and species richness was: poor, with <25 individuals per m⁻² and 1 sp.; moderate, with ≥25–100 individuals per m⁻² and 2–3 sp.; good, with >100–200 individuals per m⁻² and 4–5 sp.; excellent, with >200 individuals per m⁻² and >6 sp. About 60% of the 34 farms fell into the poor to moderate categories based on this classification, so further improvements to the NT farm's management system are needed to enhance earthworm populations. Nevertheless, further validation of this ranking system is necessary to allow for its wider-spread use.     

Old manor parks as potential habitats for forest flora in agricultural landscapes of Estonia

Forest biodiversity conservation in intensively managed agricultural landscapes is a constant concern. The dispersal ability of forest plants is, hypothetically, the major limiting factor in fragmented forest landscapes and, therefore, we tested the validity of the theoretical dispersal scheme for plants in fragmented landscapes: ancient forest > woody corridor > emerging forest patch. To this end, we examined the distribution pattern of forest-dwelling plant species in rural landscapes, specifically the occurrence of common forest plant species in old historical forests and in closed-canopy stands of rural ornamental parks, planted on an agricultural land one–two centuries ago.We found that (i) the shade tolerant plant flora in parks’ stands more resemble forests than woody linear habitats (corridors), (ii) nearly 50% of the local forest species pool was present in parks, (iii) the abundance of seed source habitats and the ecological quality of the target habitat determine success rate of colonization. Models predicted that optimal stand characteristics for forest herbs are a minimum area 2.5 ha, canopy closure 0.7–0.8, basal area of trees 10–20 m² ha^?1 and the presence of moderate understory management.We conclude that only patch-type habitats provide suitable environmental conditions for forest-specific plant species. Many common forest plant species are capable of long-distance dispersal between habitat patches across hostile agricultural land, and accordingly, their dispersal follows a modified scheme of the island biogeography, without intermediary role of corridor habitats. Old rural manor parks provide an ecosystem service for nature conservation by harbouring forest biodiversity, and should be considered as potential refugium habitats.     

Recovery of woody plant diversity in tropical rain forests in southern China after logging and shifting cultivation

Logging and intense shifting cultivation have caused major degradation of tropical forests and loss of biodiversity. Understanding the direct and indirect effects of those land uses on plant biodiversity is essential to the restoration of tropical forests. We compared the species diversity, community composition and basal area of all stems ?1 cm dbh among 18 1-ha tropical lowland and montane rain forest plots with a well-recorded long-term history of shifting cultivation and logging on Hainan Island, south China. We also explored the relative importance of disturbance and environmental factors in determining forest recovery. We found that the species density and diversity in old growth forests were higher than in shifting cultivation fallows (55 years old) but lower than in logged forests (35–40 years since logging). The species composition of shifting cultivation fallows was distinct from other forest types but logged forests were similar to old growth forests, especially in lowland forests. Disturbance intensity was the most frequently important factor in determining species composition, species density, diversity, and basal area accumulation. Soil nutrient availability explained some of the variation in species composition and diversity. Stem density was related to multiple factors including disturbance history, soil nutrients, and distance to old-growth forest. In general, we found that disturbance intensity was a better predictor of forest structure and diversity than edaphic environmental variables, highlighting the importance of human impacts in shaping tropical forest successional pathways.     

Chronic nitrogen deposition and the composition of active arbuscular mycorrhizal fungi

A growing body of evidence indicates that atmospheric nitrogen (N) deposition can alter the composition and function of arbuscular mycorrhizal fungi (AMF) associated with plant roots. We studied the community of AMF actively transcribing ribosomal genes in the forest floor of northern hardwood forests dominated by sugar maple (Acer saccharum Marsh.) that have been exposed to experimental N deposition since 1994 (30 kg NO₃⁻-N ha⁻¹ year⁻¹). Our objective was to evaluate whether previously observed declines in AM root infection and mycelial production resulted in a compositional shift in the AM fungi actively providing resources to plant symbionts under chronic N deposition. To accomplish this task, we cloned and sequenced the LSU of reverse-transcribed AM fungal rRNA extracted from the forest floor under ambient and experimental N deposition treatments. We found that experimental N deposition did not alter the active community of AMF or AMF diversity, but we did observe a significant decrease in rare taxa under chronic N deposition. Our results indicate that chronic N deposition, at levels expected by the end of this century, can exert a moderate influence on the composition and abundance of AMF associated with plant roots in a wide-spread forest ecosystem in the northeastern North America.     

Multiple measurements constrain estimates of net carbon exchange by a Eucalyptus forest

Net ecosystem exchange of carbon (F_NEE) was estimated for a temperate broadleaf, evergreen eucalypt forest ecosystem at Tumbarumba in south-eastern Australia to investigate the processes controlling forest carbon sinks and their response to climate. Measurements at a range of temporal and spatial scales were used to make three different estimates of F_NEE based on: (1) the difference between fluxes of carbon input by photosynthesis and output by autotrophic plus heterotrophic respiration, (2) changes over time in the carbon pools in the above- and below-ground biomass, soil and litter, and (3) micrometeorological flux measurements that provide a continuous estimate of the net exchange. A rigorous comparison of aggregated component fluxes and the net eddy fluxes within a flux tower source area was achieved based on an inventory of the site and a detailed sampling strategy. Measurements replicated in space and time provided mean values, confidence limits and patterns of variation of carbon pools and fluxes that allowed comparisons within known limits of uncertainty. As a result of comparisons between nighttime eddy flux and chamber measurements of respiration, a revised micrometeorological method was developed for estimating nighttime carbon flux using flux tower measurements. Uncertainty in the final estimate of F_NEE was reduced through mutual constraints of each of these measurement approaches. F_NEE for the period October 2001–September 2002, with average rainfall, was an uptake of 6.7 (5.1–8.3) tC ha^?1 yr^?1 estimated from component fluxes, and 5.4 (3.0–7.5) tC ha^?1 yr^?1 estimated from the revised eddy flux method. Biomass increment was 4.5 (3.7–5.4) tC ha^?1 yr^?1 and the remaining 0.9–2.2 tC ha^?1 yr^?1 could represent a carbon sink in the soil and litter pools or lie within the confidence limits of the measured fluxes. F_NEE was reduced to ?0.1 to 2.4 tC ha^?1 yr^?1 during a period of drought and insect disturbance in October 2002–September 2003, with biomass increment being the main component reduced. The forest is a large carbon sink compared with other forest ecosystems, but this is subject to high-annual variability in response to climate variability and disturbance.     

Accumulation of As,Pb, Zn,Cd and Cu and arbuscular mycorrhizal status in populations of Cynodon dactylon grown on metal-contaminated soils

Metal(loid) accumulation and arbuscular mycorrhizal (AM) status of the dominant plant species, Cynodon dactylon, growing at four multi-metal(loid)s-contaminated sites and an uncontaminated site of China were investigated. Up to 94.7 As mg kg^?1, 417 Pb mg kg^?1, 498 Zn mg kg^?1, 5.8 Cd mg kg^?1 and 27.7 Cu mg kg^?1 in shoots of C. dactylon were recorded. The plant was colonized consistently by AM fungi (33.0–65.5%) at both uncontaminated site and metal-contaminated sites. Based on morphological characteristics, fourteen species of AM fungi were identified in the rhizosphere of C. dactylon, with one belonging to the genus of Acaulospora and the other thirteen belonging to the genus of Glomus. Glomus etunicatum was the most common species associated with C. dactylon growing at metal-contaminated sites. Spore abundance in the rhizosphere of C. dactylon growing at the metal-contaminated soils (22–82 spores per 25 g soil) was significantly lower than that of the uncontaminated soils (371 spores per 25 g soil). However, AM fungal species diversity in the metal-contaminated soils was significantly higher than that in the uncontaminated soils. This is the first report of AM status in the rhizosphere of C. dactylon, the dominant plant survival in metal-contaminated soils. The investigation also suggests that phytorestoration of metal-contaminated sites might be facilitated using the appropriate plant with the aid of tolerant AM fungi.     

Accounting for variability in soil microbial communities of temperate upland grassland ecosystems

This study aimed to determine the factors which regulate soil microbial community organisation and function in temperate upland grassland ecosystems. Soil microbial biomass (C_mic), activity (respiration and potential carbon utilisation) and community structure (phospholipid fatty acid (PLFA) analysis, culturing and community level physiological profiles (CLPP) (Biolog^®)) were measured across a gradient of three upland grassland types; Festuca–Agrostis–Galium grassland (unimproved grassland, National Vegetation Classification (NVC) — U4a); Festuca–Agrostis–Galium grassland, Holcus–Trifolium sub-community (semi-improved grassland, NVC — U4b); Lolium–Cynosurus grassland (improved grassland, NVC — MG6) at three sites in different biogeographic areas of the UK over a period of 1 year. Variation in C_mic was mainly due to grassland type and site (accounting for 55% variance, v, in the data). C_mic was significantly (P<0.001) high in the unimproved grassland at Torridon (237.4 g C m⁻² cf. 81.2 g C m⁻² in semi- and 63.8 g C m⁻² in improved grasslands) and Sourhope (114.6 g C m⁻² cf. in 44.8 g C m⁻² semi- and 68.3 g C m⁻² in improved grasslands) and semi-improved grassland at Abergwyngregyn (76.0 g C m⁻² cf. 41.7 g C m⁻² in un- and 58.3 g C m⁻² in improved grasslands). C_mic showed little temporal variation (v=3.7%). Soil microbial activity, measured as basal respiration was also mainly affected by grassland type and site (n=32%). In contrast to C_mic, respiration was significantly (P<0.001) high in the improved grassland at Sourhope (263.4 l h⁻¹m⁻² cf. 79.6 l h⁻¹m⁻² in semi- and 203.9 l h⁻¹m⁻² unimproved grasslands) and Abergwyngregyn (198.8 l h⁻¹m⁻² cf. 173.7 l h⁻¹m⁻² in semi- and 88.2 l h⁻¹m⁻² unimproved grasslands). Microbial activity, measured as potential carbon utilisation, agreed with the respiration measurements and was significantly (P<0.001) high in the improved grassland at all three sites (A₅₉₀ 0.14 cf. 0.09 in semi- and 0.07 in unimproved grassland). However, date of sampling also had a significant (P<0.001) impact on C utilisation potential (v=24.7%) with samples from April 1997 having highest activity at all three sites. Variation in microbial community structure was due, predominantly, to grassland type (average v=23.6% for bacterial and fungal numbers and PLFA) and date of sampling (average v=39.7% for bacterial and fungal numbers and PLFA). Numbers of culturable bacteria and bacterial PLFA were significantly (P<0.001) high in the improved grassland at all three sites. Fungal populations were significantly (P<0.01) high in the unimproved grassland at Sourhope and Abergwyngregyn. The results demonstrate a shift in soil microbial community structure from one favouring fungi to one favouring bacteria as grassland improvement increased. Numbers of bacteria and fungi were also significantly (P<0.001) higher in August than any other sampling date. Canonical variate analysis (CVA) of the carbon utilisation data significantly (P<0.05) differentiated microbial communities from the three grassland types, mainly due to greater utilisation of sugars and citric acid in the improved grasslands compared to greater utilisation of carboxylic acids, phenolics and neutral amino acids in the unimproved grasslands, possibly reflecting substrate availability in these grasslands. Differences in C_mic, activity and community structure between grassland types were robust over time. In addition, broad scale measures of microbial growth and activity (C_mic and respiration) showed little temporal variation compared to measures of soil microbial community structure, which varied quantitatively with respect to environmental variables (temperature, moisture) and plant productivity, hence substrate supply.     

Recovery of amphibian species richness and composition in a chronosequence of secondary forests,northeastern Costa Rica

In some tropical regions, following the abandonment of agriculture and pastures, secondary forests can recover plant species richness and forest structure (e.g. canopy cover, biomass); however, the importance of these secondary forests for fauna is not clear. Secondary forests can benefit fauna by providing suitable habitats, connecting forests fragments, and increasing gene flow. Previous studies of forest regeneration have showed different levels of amphibian recovery. In Puerto Rico, 1–5 years old secondary forests achieved similar amphibian species richness and composition in comparison with old-growth forests, while in Brazil secondary forests from 14 to 19 years of recovery only recovered 60% of the species of old-growth forests. We evaluated amphibian recovery in secondary forests in northeastern Costa Rica, by assessing amphibian recovery in 12 secondary forests that vary in age of recovery and in three old-growth forests using visual and acoustic surveys. Our sites varied in terms of their landscape (e.g. amount of surrounding forest) and forest characteristics (e.g. forest age, aboveground biomass, basal area, number of tree species, number of stems, leaf-litter depth), but there was no relationship between these characteristics and amphibian species richness or species composition. We found that amphibians are recovering rapidly in secondary forests in Costa Rica, and even young forests (10–16 years) had similar species richness and composition in comparison with old-growth forests. These forests are providing suitable microhabitats conditions for amphibians. In addition, this study highlights the importance of landscape characteristics. The abundance of amphibian species sources (e.g. forest patches) and connections between forests appear to be helping the species colonize these sites. Worldwide, the area of secondary forests is increasing, and our results show that these habitats are suitable for a diversity of amphibian species, suggesting that these forests can help reduce amphibian population and species decline.     

Beetles community structures under different reclamation practices

Differences in beetle community structures between not re-cultivated over 60 years old forest and 10 years old re-cultivated meadow and shrubs were compared. On each locality there were arranged three replicates of 10 pitfall trap rows. Mean abundance of beetles was significantly greater on old forest stand than re-cultivated meadow. However no significant differences between localities in species richness and non parametric index of diversity (Shannon H′) were recorded. Rank–abundance curves for newly established communities best fits to geometric model of distribution (r = 0.98, P < 0.001) which is characteristic for species poor communities, where a single environmental resource is extremely important, meanwhile old stand, without any reclamation practice is best fitted to lognormal distribution model (r = 0.99, P < 0.001) which is typical for more stable and well developed communities. Principal component analysis for log (N + 1) transformed matrix of abundances described well 60% of the total variance. Two clear groups of species transects were derived: one concentrated assemblages of both reclaimed and newly established communities and the second one old non reclaimed forest stands. Significant feature of trophic guild structure in all three communities is the lowest abundance of decomposers meanwhile predators predominate on non re-cultivated old sites and herbivores on reclaimed young stands.     

Temporal variation of soil compaction and deterioration of soil quality in pasture areas of Colombian Amazonia

In the Amazon basin, tropical rainforest is being slashed and burned at accelerated rates for annual crops over a couple of years, followed by forage grasses. Because of poor management, the productivity of established pastures declines in a few years so that grazing plots are abandoned and new areas are deforested. Previous studies in the region report higher bulk density in soils under pasture than in similar soils under forest. The objective of this study was to detect changes in the physical quality of the topsoil of nutrient-poor Typic Paleudults in the colonisation area of Guaviare, Colombian Amazonia, and analyse the effect of soil deterioration on pasture performance. Temporal variation of soil compaction under pasture was analysed by comparing natural forest taken as control and pasture plots of Brachiaria decumbens (Stapf) grouped into three age ranges (<3, 3–9, >9 years). Evidence of soil compaction through cattle trampling, after clearing the primary forest, included the formation of an Ap horizon with platy structure and dominant greyish or olive colours, reflecting impaired surface drainage, the increase of bulk density and penetration resistance, and the decrease of porosity and infiltration rate. From primary forest to pastures older than 9 years, bulk density of the 5–10 cm layer increase was 42% in fine-textured soils and 30% in coarse-textured soils. Penetration resistance ranged from 0.45 MPa under forest to 4.25 MPa in old pastures, with maximum values occurring at 3–12 cm depth in pastures older than 9 years. Average total soil porosity was 58–62% under forest and 46–49% under pasture. Basic infiltration dropped from 15 cm h⁻¹ in the original forest conditions to less than 1 cm h⁻¹ in old pastures. Crude protein content and dry matter yield of the forage grass steadily decreased over time. No clear relationship between declining protein content as a function of pasture age and changes in chemical soil properties was found, but there was a high negative correlation (r=−0.81) between protein content and bulk density, reflecting the effect of soil compaction on pasture performance. After about 9–10 years of use, established grass did no longer compete successfully with invading weeds and grazing plots were abandoned. As land is not yet a scarcity in this colonisation area, degraded pastures are seldom rehabilitated.     

Effect of wetting intensity on soil GHG fluxes and microbial biomass under a temperate forest floor during dry season

The increasing frequency of periodic droughts followed by heavy rainfalls is expected for this current century, but little is known about the effects of wetting intensity on the in situ biogenic greenhouse gas (GHG) fluxes of forest soils and soil microbial biomass. To gain new insights into the underlying mechanisms responsible for wetting-induced GHG fluxes in situ, rain simulation field experiments during a natural prolonged drought period were done under a temperate forest in northeast China. The intensity of rainfall-induced CO₂ pulses increased from 0.84 to 2.08 g CO₂–C m^? 2 d^? 1 with the intensity of wetting up to ca. 80% water-filled pore space, which coincided with an increase in soil microbial biomass and with a decrease in soil labile organic C following wetting. Methane uptake rates decreased from 1.76 to 0.87 mg CH₄–C m^? 2 d^? 1 with the intensity of wetting. Wetting dry forest floor increased N₂O fluxes from 6.2 to 25.9 μg N₂O–N m^? 2 d^? 1, but there was no significant difference between all experimental wetted plots. The rainfall-induced N₂O pulses with increasing wetting intensity were opposite to that of the CO₂ pulses, showing a maximum response at the lowest wetting intensity. An analysis of the temperature sensitivity of GHG fluxes indicated that temperature had an increased effect on the in situ CO₂ flux and CH₄ uptake, respectively, under wetted and dry conditions. The global warming potential of GHG fluxes and Q₁₀ value of the temperature response of CO₂ fluxes increased linearly with wetting intensity. The results indicate that the rainfall-induced soil CO₂ pulse is mainly due to enhanced microbial consumption on substrates and highlight the complex nature of belowground C-cycling responses to climate change in northeast China forests that normally experience periodic droughts followed by heavy rainfalls over the year.     

Identifying earthworm's organic matter signatures by near infrared spectroscopy in different land-use systems in Tabasco,Mexico

In the state of Tabasco, South-eastern, Mexico, land-use changes such as the conversion of natural into agricultural systems, modify soil quality and the abundance of soil macrofauna, including earthworms. The aim of this study was to characterize by near-infrared spectroscopy (NIRS) the earthworms’ fingerprint in soil, in six sites including natural and agricultural ecosystems with low and high earthworm biomass and low and high earthworm diversity, in order to identify specific wavelengths that discriminate the presence/abundance of earthworm species and functional groups. The spectral region of 1860–1870 nm was significantly correlated with total earthworm density, particularly at one of the sites (Cedar polyculture; r = 0.8, p < 0.05). Earthworm biomass had a specific NIRS wavelength according to the earthworm species and feeding category: 1820 and1860–1870 nm wavelengths were significantly correlated with Polypheretima elongata (r² = 0.7, p < 0.05; mesohumic species) biomass and 2090 nm for biomass of all Lavellodrilus species (polyhumics). Two species had a much wider spectral range: L. bonampakensis and Dichogaster saliens (an epigeic worm; 1690–2300 nm, r² = 0.7, p < 0.05). Biomasses of Periscolex brachysistis and Diplotrema murchiei were not significantly correlated with any near infrared wavelength spectra analyzed. Combining a maximum of 4 species per wavelength, mesohumic earthworms had a wider wavelength spectrum than polyhumics. Therefore, earthworm species diversity, biomass and abundance are associated with soil quality (as measured by NIR spectra) and this relationship varies with species and ecological category. Sites with lower and higher earthworm diversity have lower and higher soil organic matter quality, respectively, as observed by the wider or narrower spectral range with which earthworm biomasses are correlated.     

Effects of cropping and tree density on earthworm community composition and densities in central Cameroon

Earthworms can have positive effects upon crop growth in the tropics. If soils are to be managed sustainably, then more attention should be paid to the effects of cultivation and cropping practices upon earthworms. When forest vegetation is cleared, slashed, burned and land is tilled and cultivated, earthworm abundance, diversity and activity are reduced. Conversely, retaining trees in agroecosystems may maintain earthworm populations during the cropping phase.Here, we assessed the impact on earthworm species diversity and densities of crop cultivation in the understorey of timber plantations thinned to two tree densities and compared these with uncropped, undisturbed timber plantation controls. The plots were reassessed after two and a half years of fallow to see whether populations had recovered. The experiment was in central Cameroon.Seventeen earthworm species were recorded from Eudrilidae subfamilies Eudrilinae and Pareudrilinae, Ocnerodrilidae and Acanthodrilidae, most of which were endemics. This included two new species from two new genera from the sub-family Pareudrilinae, one new species from one new genus of Ocnerodrilidae, two new species of Dichogaster and one new species of Legonodrilus. Ten species were epigeic, six were endogeic and one was anecic.Generally, earthworm densities were lower in cropped plots than in the undisturbed plantation control. The most abundant species was a Legonodrilus sp. nov. with average densities of 49 individuals m⁻² in the crop phase and 80 ind. m⁻² in the fallow phase. By the fallow phase, densities in the low tree density (120 ind. m⁻²) were higher than in the high density (40 ind. m⁻²). The densities of the epigeic Acanthodrilidae were significantly reduced to 7 ind. m⁻² in the cropped plots compared with 42 ind. m⁻² in the control plots. The effects of cropping were thus species-specific and more work is required to identify which of these endemics are the ecosystem engineers in the system.     

Differences in soil respiration between different tropical ecosystems

We examined the relationship between soil respiration rate and environmental determinants in three types of tropical forest ecosystem—primary forest, secondary forest, and an oil palm plantation in the Pasoh Forest Reserve on the Malaysian Peninsula. In August 2000, the soil respiration rate and environmental factors (soil temperature, soil water content, soil C and N contents, biomass of fine roots, and microbes) were measured at 12–16 points in research quadrats. Soil respiration rates were 831 ± 480, 1104 ± 995, 838 ± 143, 576 ± 374, and 966 ± 578 (mean ± S.D.) mg CO₂ m⁻² h⁻¹ in the primary forest canopy and gap site, secondary forest canopy and gap site, and oil palm plantation, respectively. Although the mean soil respiration rates in the three forest ecosystems did not differ significantly, differences were evident in the environmental factors affecting the soil respiration. The major causes of spatial variation in soil respiration were fine root biomass, soil water content, and soil C content in the primary and secondary forests and oil palm plantation, respectively.     

Distribution with depth of protozoa,bacteria and fungi in soil profiles from three Danish forest sites

The numbers and biomass of protozoa, bacteria and fungi were measured at various depths (1.5–122.5 cm) in the unsaturated zone of three contrasting pristine Danish forest site profiles: a dry beech (Fagus silvatica) forest on mor, a wet peaty spruce (Picea abies)/birch (Betula pubescens) forest and a dry spruce (P. abies) forest on mor. All sites were situated on a Weichel moraine. Except for a bacterial peak at 42.5 cm in the peat profile, the general tendency was a decrease in biomass with increasing depth for all groups examined. Protozoa decreased more rapidly with increasing depth than the other two groups of organisms examined. An evaluation of the bacterial–protozoan relationship by a simple mathematical model indicated that the subsurface protozoan populations are active and not accidental percolated cysts. The low protozoan numbers found in shallow subsurface sites contrast markedly with the results from contaminated sites where much larger protozoan populations have been reported even at considerable depths. Consequently, the results suggest that protozoa are good indicators of organic pollution in subsurface soils; however, more work involving the comparison of polluted and unpolluted soils is needed to confirm this suggestion.     

Modeling approaches to estimate effective leaf area index from aerial discrete-return LIDAR

Leaf area index (LAI) has traditionally been difficult to estimate accurately at the landscape scale, especially in heterogeneous vegetation with a range in LAI, but remains an important parameter for many ecological models. Several different methods have recently been proposed to estimate LAI using aerial light detection and ranging (LIDAR), but few systematic approaches have been attempted to assess the performance of these methods using a large, independent dataset with a wide range of LAI in a heterogeneous, mixed forest. In this study, four modeling approaches to estimate LAI using aerial discrete-return LIDAR have been compared to 98 separate hemispherical photograph LAI estimates from a heterogeneous mixed forest with a wide range of LAI. Among the four approaches tested, the model based on the Beer–Lambert law with a single parameter (k: extinction coefficient) exhibited highest accuracy (r² = 0.665) compared with the other models based on allometric relationships. It is shown that the theoretical k value (=0.5) assuming a spherical leaf angle distribution and the zenith angle of vertical beams (=0°) may be adequate to estimate effective LAI of vegetation using LIDAR data. This model was then applied to six 30 m × 30 m plots at differing spatial extents to investigate the relationship between plot size and model accuracy, observing that model accuracy increased with increasing spatial extent, with a maximum r² of 0.78 at an area of 900 m². Findings of the present study can provide useful information for selection and application of LIDAR derived LAI models at landscape or other spatial scales of ecological importance.     

Nitrogen mineralization in the ruderal sub-alpine communities in Mount Uludağ, Turkey

Nitrogen mineralization and nitrification in the soil of sub-alpine ruderal community of Mount Uludağ, Bursa, Turkey was measured for 1 year, under field conditions with Verbascum olympicum and Rumex olympicus being the dominant pioneer species under dry and wet sites, respectively. Seasonal fluctuations were observed in N mineralization and nitrification. The net N mineralization and nitrification were high in early summer and winter, due to high moisture. The annual net N mineralization rate (for the 0–15 cm soil layer) was higher under R. olympicus (188 kg N ha⁻¹ yr⁻¹) than under V. olympicum (96 kg N ha⁻¹ yr⁻¹). A significant positive correlation between net N mineralization and soil organic C (r² = 0.166), total N (r² = 0.141) and water content (r² = 0.211) was found. Our results indicate that N mineralization rate is high in soils of ruderal communities on disturbed sites and varies with dominant species and, a difference in net N mineralization rate can be attributed to organic C, total N and moisture content of soils.     

Litter quality effects on soil carbon and nitrogen dynamics in temperate alley cropping systems

Microcosm and litterbag experiments were conducted to determine the effects of litter quality, soil properties and microclimate differences on soil carbon (C) and nitrogen (N) mineralization in alley cropping systems. Bulk soils were collected from 0 to 20 cm depth at three sites: a 21-year old pecan (Carya illinoinensis)/bluegrass (Poa trivialis) intercrop (Pecan site) in north-central Missouri, a 12-year old silver maple (Acer saccharinum)/soybean (Glycine max)–maize (Zea mays) rotation (Maple site) in northeastern Missouri and a restored prairie site (MDC site) in southwestern Missouri. Seven tree and crop litters with varying composition were collected, including pecan, silver maple, chestnut and walnut leaf litter (tree litter) and maize, soybean and bluegrass residues (crop litter). Aerobic microcosm incubations were maintained at 25 °C and a soil water potential of −47 kPa. Unamended MDC soil mineralized 24 and 18% more CO₂ than the Pecan and Maple soils, respectively. Soil amended with crop litter mineralized on average 32% more CO₂ than when amended with tree litter. Net N mineralization from soybean litter was 40 mg kg⁻¹, while all other litter immobilized N for various durations. A double pool and a single pool model best described C and N mineralization from amended soils, respectively. Cumulative CO₂ mineralized, labile C fraction (C₁) and potentially mineralizable C (C₀) were correlated to litter total N and lignin contents and to (lignin + polyphenol):N ratio. In the field, bluegrass litter decomposed and released N twice as fast as pecan leaf litter. Soybean, maize and silver maple litter released 84, 75 and 63% of initial N, respectively, 308 days after field placement, while no differences in mass loss was observed among the three litter materials. At the Maple site, mass and N remaining, 308 days after field placement was lower at the middle of the alley, corresponding to higher soil temperature and water content. No differences in mass loss and N release patterns were observed at the Pecan site. Microclimate and litter quality effects can lead to differences in nutrient availability in alley cropping systems.     

Response of the soil fungal community to multi-factor environmental changes in a temperate forest

Both environmental and climatic changes are known to influence soil microbial biomes in terrestrial ecosystems. However, there are limited data defining the interactive effects of multi-factor environmental disturbances, including N-deposition, precipitation, and air temperature, on soil fungal communities in temperate forests. A 3-year outdoor pot experiment was conducted to examine the temporal shifts of soil fungal communities in a temperate forest following N-addition, precipitation and air temperature changes. The shifts in the structure and composition of soil fungal communities were characterized by denaturing gradient gel electrophoresis and DNA sequencing. N-addition regimen induced significant alterations in the composition of soil fungal communities, and this effect was different at both higher and lower altitudes. The response of the soil fungal community to N-addition was much stronger in precipitation-reduced soils compared to soils experiencing enhanced precipitation. The combined treatment of N-addition and reduced precipitation caused more pronounced changes in the lower altitude versus those in the higher one. Certain fungal species in the subphylum Pezizomycotina and Saccharomycotina distinctively responded to N fertilization and soil water control at both altitudes. Redundancy discrimination analysis showed that changes in environmental factors and soil physicochemical properties explained 43.7% of the total variability in the soil fungal community at this forest ecosystem. Variations in the soil fungal community were significantly related to the altitude, soil temperature, total soil N content (TN) and pH value (P < 0.05). We present evidence for the interactive effects of N-addition, water manipulation and air temperature to reshape soil fungal communities in the temperate forest. Our data could provide new insights into predicting the response of soil micro-ecosystem to climatic changes.