Is the soil microbial community related to the basal area of trees in a Scots pine stand?

The main energy sources of soil microorganisms are litter fall, root litter and exudation. The amount on these carbon inputs vary according to basal area of the forest stand. We hypothesized that soil microbes utilizing these soil carbon sources relate to the basal area of trees. We measured the amount of soil microbial biomass, soil respiration and microbial community structure as determined by phospholipid fatty acid (PLFA) profiles in the humus layer (FH) of an even-aged stand of Scots pine (Pinus sylvestris L.) with four different basal area levels ranging from 19.9 m² ha⁻¹ in the study plot Kasper 1 to 35.7 m² ha⁻¹ in Kasper 4. Increasing trend in basal respiration, total PLFAs and fungal-to-bacterial ratio was observed from Kasper 1 to Kasper 3 (basal area 29.2 m² ha⁻¹). The soil microbial community structure in Kasper 3 differed from that of the other study plots.     

Soil microbial biomass and fluorescein diacetate hydrolytic activity in Japanese acidic tea field soils

The soil microbial biomass (SME) content and fluorescein diacetate (FDA) hydrolytic activity in 21 acidic tea field soils in Japan were determined. SM 3 content in the tea field soils was quantitatively similar to that in 13 arable soils with neutral soil pH previously reported. However, the ratio of the SMB content to organic matter content in the tea field soils classified as red-yellow soil, brown forest soil, and lithosol was clearly lower than that in the neutral arable soils classified as non-volcanic ash soil. FDA hydrolytic activity in the tea field soils was higher than the activity in various soils with neutral soil pH and showed a negative relationship with the soil pH.     

Changes in the soil microbial community structure with latitude in eastern China, based on phospholipid fatty acid analysis

Phospholipid fatty acid (PLFA) profiles were measured in soils from 14 sites in eastern China representing typical geographic zones of varying latitude from north (47.4°N) to south (21.4°N). Amounts of soil microbial biomass, measured as total amounts of PLFAs, showed no regular trend with latitude, but were positively correlated with soil organic carbon content, the concentration of humic acid and amorphous iron oxide. Soil microbial community structure showed some biogeographical distribution trends and was separated into three groups in a cluster analysis and principal coordinate analysis of log transformed PLFA concentrations (mol%). Soils in the first group came from northern China with medium mean annual temperature (1.2–15.7 °C) and rainfall (550–1021 mm). Soils in the second group originated from southern China with a relatively higher mean annual temperature (15.7–21.2 °C) and rainfall (1021–1690 mm). Soils clustered in the third group originated from the most southerly region. The northern soils contained relatively more bacteria and Gram-negative PLFAs, while the southern soils had more fungi and pressure indexed PLFAs. These differences in soil microbial community structure were largely explained by soil pH, while other site and soil characteristics were less important.     

Soil texture affects soil microbial and structural recovery during grassland restoration

Many biotic and abiotic factors influence recovery of soil communities following prolonged disturbance. We investigated the role of soil texture in the recovery of soil microbial community structure and changes in microbial stress, as indexed by phospholipid fatty acid (PLFA) profiles, using two chronosequences of grasslands restored from 0 to 19 years on silty clay loam and loamy fine sand soils in Nebraska, USA. All restorations were formerly cultivated fields seeded to native warm-season grasses through the USDA’s Conservation Reserve Program. Increases in many PLFA concentrations occurred across the silty clay loam chronosequence including total PLFA biomass, richness, fungi, arbuscular mycorrhizal fungi, Gram-positive bacteria, Gram-negative bacteria, and actinomycetes. Ratios of saturated:monounsaturated and iso:anteiso PLFAs decreased across the silty clay loam chronosequence indicating reduction in nutrient stress of the microbial community as grassland established. Multivariate analysis of entire PLFA profiles across the silty clay loam chronosequence showed recovery of microbial community structure on the trajectory toward native prairie. Conversely, no microbial groups exhibited a directional change across the loamy fine sand chronosequence. Changes in soil structure were also only observed across the silty clay loam chronosequence. Aggregate mean weighted diameter (MWD) exhibited an exponential rise to maximum resulting from an exponential rise to maximum in the proportion of large macroaggregates (>2000 μm) and exponential decay in microaggregates (<250 μm and >53 μm) and the silt and clay fraction (<53 μm). Across both chronosequences, MWD was highly correlated with total PLFA biomass and the biomass of many microbial groups. Strong correlations between many PLFA groups and the MWD of aggregates underscore the interdependence between the recovery of soil microbial communities and soil structure that may explain more variation than time for some soils (i.e., loamy fine sand). This study demonstrates that soil microbial responses to grassland restoration are modulated by soil texture with implications for estimating the true capacity of restoration efforts to rehabilitate ecosystem functions.     

Evidence that plant diversity and site productivity confer stability to forest floor microbial biomass

The ability of soil microbial communities to withstand punctual disturbance or chronic stress is important for the stability of ecosystem processes. Factors controlling microbial community composition or soil resource availability should be regarded as potential determinants of this stability. Here, we explored the effects of three stand types (jack pine, aspen and mixed-wood) and two geologic parent materials (clay and till), on the stability of the microbial biomass in the forest floor. We hypothesised that microbial communities in mixed-wood stands or on the clay soil would show greater resistance to, and resilience from, a dry-wet disturbance, and a higher tolerance to incremental additions of HCl or Cu, than microbial communities in mono-specific stands or on the till soil. We also surveyed the understory vegetation, and measured chemical properties and microbial phospholipid fatty acid profiles in the forest floor, so as to gain insights into the factors regulating microbial stability. Microbial resistance to disturbance was found to be higher in mixed-wood than in mono-specific stands. Microbial communities from mixed-wood stands also showed a high tolerance to HCl and Cu stress over both geologic parent materials, as opposed to those in mono-specific stands that showed a high tolerance to stress on only one type of parent material. Some forest floor properties in mixed-wood stands (e.g. Ca on clay, mineralisable N and C/N ratio on till) were more similar to the more productive aspen, than to jack pine stands. Other properties (understory plant communities, pH, actinomycete and arbuscular mycorrhizae) of mixed-wood stands were transitional between those in aspen and jack pine stands, suggesting that both tree species contribute in structuring the forest floor microbial pool in mixed-wood stands. We put forward that this may provide a more diverse capability to resist disturbance and tolerate stress than in mono-specific stands. We found no effect of stand type on microbial resilience to disturbance, but resilience was higher on clay than on till plots. This could be due to a higher fungal/bacterial ratio on till plots, as slower fungal growth rates may hinder resilience, or to lower carbon and nutrient availability limiting the growth rate of resistant microbial cells. We conclude that plant diversity and site productivity are important drivers of forest floor microbial stability in the southern boreal forest of eastern Canada.     

Soil microbial communities in (sub)alpine grasslands indicate a moderate shift towards new environmental conditions 11 years after soil translocation

A change in environmental conditions may result in altered soil microbial communities in alpine grasslands but the extent and direction of the change is largely unknown. The aim of our study was to investigate (i) differences in soil microbial communities across an elevation gradient of (sub)alpine grassland soils in the Swiss Alps, and (ii) the long-term effect of translocation of soil cores from a higher to a lower elevation site. The translocation of undisturbed soil cores from a high alpine site (2525 m asl) to a subalpine site near the timberline (1895 m asl) induced an effective artificial warming of 3.3 °C. We hypothesized that after longer than a decade, soil microbial community in translocated cores would differ from that at the original site but resemble the community at the new site. Results from soil phospholipid fatty acid (PLFA) analysis confirm significant differences in microbial communities between sites and a shift in total microbial biomass (TMB) and proportional distribution of structural groups in the translocated cores towards the lower elevation community. Patterns related to translocation were also observed as shifts in the fractional biomass of ectomycorrhizal and arbuscular fungi, and in relative contents of several structural groups. Hence, soil microbial community activity and diversity indicate a moderate shift towards new site conditions after 11 years and therefore, our data suggest slow responses of microbial communities to environmental changes in alpine soils.     

不同林龄马尾松人工林土壤微生物群落结构和功能多样性演变

土壤微生物在森林生态系统中起着至关重要的作用,研究人工林演变中土壤微生物群落结构特征,对评价人工林土壤质量动态变化和维持土壤微生态平衡具有重要意义。以亚热带地区马尾松人工林为研究对象,采用磷脂脂肪酸(Phospholipid fatty acid,PLFA)和BIOLOG技术研究不同林龄(13 a,25 a,38 a和58 a)对土壤微生物群落结构和代谢功能多样性的影响。结果表明:不同林龄土壤微生物类群均以细菌为主,其次为真菌和放线菌,最后为原生动物;土壤微生物总PLFAs量、真菌数量和真菌/细菌均表现为13 a最高,38 a最低;土壤细菌、革兰氏阳性细菌(G+)、革兰氏阴性细菌(G–)和放线菌数量均25a最高。层次聚类和主成分分析(PCA)结果表明,林龄对土壤微生物群落结构产生显著影响,13 a和25 a林龄分别与38 a和58 a林龄的土壤微生物群落结构差异较大。冗余分析表明,有机碳、全氮和pH是土壤微生物群落结构的主要影响因素。不同林龄土壤平均颜色变化率(AWCD)和微生物功能多样性指数(香农指数、辛普森指数和McIntosh指数)总体表现为25 a>13 a>58 ...     

Variations in soil microbial biomass and crop roots due to differing resource quality inputs in a tropical dryland agroecosystem

The influence of exogenous organic inputs on soil microbial biomass dynamics and crop root biomass was studied through two annual cycles in rice-barley rotation in a tropical dryland agroecosystem. The treatments involved addition of equivalent amount of N (80 kg N ha⁻¹) through chemical fertilizer and three organic inputs at the beginning of each annual cycle: Sesbania shoot (high-quality resource, C:N 16, lignin:N 3.2, polyphenol+lignin:N 4.2), wheat straw (low-quality resource, C:N 82, lignin:N 34.8, polyphenol+lignin:N 36.8) and Sesbania+wheat straw (high-and low-quality resources combined), besides control. The decomposition rates of various inputs and crop roots were determined in field conditions by mass loss method. Sesbania (decay constant, k=0.028) decomposed much faster than wheat straw (k=0.0025); decomposition rate of Sesbania+wheat straw was twice as fast compared to wheat straw. On average, soil microbial biomass levels were: rice period, Sesbania?Sesbania+wheat straw>wheat straw?fertilizer; barley period, Sesbania+wheat straw>Sesbania?wheat straw?fertilizer; summer fallow, Sesbania+wheat straw>Sesbania>wheat straw?fertilizer. Soil microbial biomass increased through rice and barley crop periods to summer fallow; however, in Sesbania shoot application a strong peak was obtained during rice crop period. In both crops soil microbial biomass C and N decreased distinctly from seedling to grain-forming stages, and then increased to the maximum at crop maturity. Crop roots, however, showed reverse trend through the cropping period, suggesting strong competition between microbial biomass and crop roots for available nutrients. It is concluded that both resource quality and crop roots had distinct effect on soil microbial biomass and combined application of Sesbania shoot and wheat straw was most effective in sustained build up of microbial biomass through the annual cycle.     

Structure and function of the soil microbial community in microhabitats of a heavy metal polluted soil

 Particle-size fractionation of a heavy metal polluted soil was performed to study the influence of environmental pollution on microbial community structure, microbial biomass, microbial residues and enzyme activities in microhabitats of a Calcaric Phaeocem. In 1987, the soil was experimentally contaminated with four heavy metal loads: (1) uncontaminated controls; (2) light (300 ppm Zn, 100 ppm Cu, 50 ppm Ni, 50 ppm V and 3 ppm Cd); (3) medium; and (4) heavy pollution (two- and threefold the light load, respectively). After 10 years of exposure, the highest concentrations of microbial ninhydrin-reactive nitrogen were found in the clay (2–0.1 μm) and silt fractions (63–2 μm), and the lowest were found in the coarse sand fraction (2,000–250 μm). The phospholipid fatty acid analyses (PLFA) and denaturing gradient gel electrophoresis (DGGE) separation of 16S rRNA gene fragments revealed that the microbial biomass within the clay fraction was predominantly due to soil bacteria. In contrast, a high percentage of fungal-derived PLFA 18 : 2ω6 was found in the coarse sand fraction. Bacterial residues such as muramic acid accumulated in the finer fractions in relation to fungal residues. The fractions also differed with respect to substrate utilization: Urease was located mainly in the <2 μm fraction, alkaline phosphatase and arylsulfatase in the 2–63 μm fraction, and xylanase activity was equally distributed in all fractions. Heavy metal pollution significantly decreased the concentration of ninhydrin-reactive nitrogen of soil microorganisms in the silt and clay fraction and thus in the bulk soil. Soil enzyme activity was reduced significantly in all fractions subjected to heavy metal pollution in the order arylsulfatase >phosphatase >urease >xylanase. Heavy metal pollution did not markedly change the similarity pattern of the DGGE profiles and amino sugar concentrations. Therefore, microbial biomass and enzyme activities seem to be more sensitive than 16S rRNA gene fragments and microbial amino-sugar-N to heavy metal treatment. Received: 21 January 2000     

Influence of polychlorinated biphenyls on microbial biomass and its activity in grassland soil

Microbial biomass content, soil respiration and biomass specific respiration rate were measured in two parts of an area polluted by a municipal waste incinerator [polychlorinated biphenyls (PCBs) from combustion processes]. The soils in the studied parts differed significantly only in their levels of PCBs. The concentration of PCBs found in a control plot (4.4 ng g^-1 soil) can be regarded as a background value while the polluted plot contained an increased amount of PCBs (14.0 ng g^-1 soil). A significantly lower microbial biomass (decreased by 23%, based on the chloroform-fumigation extraction technique) and a lower specific respiration rate (decreased by 14%) were observed in the polluted plot in comparison with the control plot at the end of experimental period (1992–1994). Furthermore, a lower ability of microorganisms in the polluted plot to convert available C_org into new biomass was found in laboratory incubations with glucose-amended samples.     

The microbial community composition changes rapidly in the early stages of decomposition of wheat residue

It is generally accepted that during the early stages of residue decomposition, easily available compounds are decomposed, leading to a relative increase in more recalcitrant compounds in the later stages of decomposition and that these changes in substrate availability are associated with changes in microbial community composition. However most studies on residue decomposition are conducted over several weeks or months; little is known about the changes in microbial community composition in the first weeks of decomposition. To address this knowledge gap, we incubated wheat residues inoculated with a microbial suspension in mesh bags buried in sand for 30 days, with sampling on days 0, 2, 4, 6, 8, 10, 15, 20, 25 and 30. Of the C added with the residues, 10, 18 and 25% had been respired on days 10, 20 and 30, respectively. The sum of PLFAs (phospholipid fatty acids), as an indicator of microbial biomass, increased strongly in the first 4 days and then decreased. The concentration of bacterial fatty acids was maximal on days 2 and 4, whereas the concentration of fungal fatty acids peaked on day 15. Microbial community composition (based on PLFA patterns) changed rapidly, with significant changes in the first 8 days and from day 8 to day 20. There were no significant changes in microbial community composition after day 20. The concentration of water-soluble C decreased strongly in the first 8 days, suggesting that the rapid changes in microbial community in this period are related to the changes in water-soluble C. Residue C chemistry, assessed by ¹³C NMR spectroscopy, changed little during the incubation period. This study showed that microbial community composition in decomposing residues changes rapidly in the first 1-2 weeks, which is, at least partly, the result of competition for the easily available compounds in the water-soluble fraction. After depletion of the water-soluble compounds, the microbial community composition changes more slowly.     

氮沉降对亚热带常绿阔叶天然林不同季节土壤微生物群落结构的影响

以亚热带地区细柄阿丁枫(Altingia gracilipes)天然林为研究对象,开展2年(2010—2011年)的原位模拟大气氮沉降试验,设置3个氮水平(以氮(N)含量计算):对照(CK, 0 kg·hm~(-2)·a~(-1))、低氮(LN, 50 kg·hm~(-2)·a~(-1))、高氮(HN,100 kg·hm~(-2)·a~(-1))。采用磷脂脂肪酸(PLFA)技术探讨常绿阔叶天然林土壤微生物群落结构对氮沉降的响应。结果表明,天然林土壤微生物以细菌为优势类群,占微生物总PLFA含量的78.3%。夏季土壤微生物群落结构与其他季节发生显著差异;LN仅显著改变夏季土壤微生物群落结构;HN导致春季和冬季土壤微生物群落结构发生显著分异,且在不同季节对土壤微生物变化类群的影响不同。此外,氮沉降未使真菌与细菌比(F∶B)和革兰氏阳性菌与革兰氏阴性菌比(G+∶G-)发生显著改变,而使不同结构的环丙烷脂肪酸或异构脂肪酸等特殊脂肪酸比值发生改变,这表明短期氮沉降虽然改变了土壤微生物的群落结构,但并未影响微生物对环境变化的响应力,微生物可能通过改变特殊脂肪酸含量应对短期氮沉降,不同季节的应对策略有一定差异。因此,在探讨氮沉降对亚热带地区森林生态系统土壤微生物群落结构的影响时有必要考虑季节因素。     

Changes in soil microbial biomass carbon and enzyme activities under elevated CO2 affect fine root decomposition processes in a Mongolian oak ecosystem

The relationships between soil microbial properties and fine root decomposition processes under elevated CO₂ are poorly understood. To address this question, we determined soil microbial biomass carbon (SMB-C) and nitrogen (SMB-N), enzymes related to soil carbon (C) and nitrogen (N) cycling, the abundance of cultivable N-fixing bacteria and cellulolytic fungi, fine root organic matter, lignin and holocellulose decomposition, and N mineralization from 2006 to 2007 in a Mongolian oak (Quercus mongolica Fischer ex Ledebour) ecosystem in northeastern China. The experiment consisted of three treatments: elevated CO₂ chambers, ambient CO₂ chambers, and chamberless plots. Fine roots had significantly greater organic matter decomposition rates under elevated CO₂. This corresponded with significantly greater SMB-C. Changes in the activities of protease and phenol oxidase under elevated CO₂ could not explain the changes in fine root N release and lignin decomposition rates, respectively, while holocellulose decomposition rate had the same response to experimental treatments as did cellulase activity. Changes in cultivable N-fixing bacterial and cellulolytic fungal abundances in response to experimental treatments were identical to those of N mineralization and lignin decomposition rates, respectively, suggesting that the two indices were closely related to fine root N mineralization and lignin decomposition. Our results showed that the increased fine root organic matter, lignin and holocellulose decomposition, and N mineralization rates under elevated CO₂ could be explained by shifts in SMB-C and the abundance of cellulolytic fungi and N-fixing bacteria. Enzyme activities are not reliable for the assessment of fine root decomposition and more attention should be given to the measurement of specific bacterial and fungal communities.     

Microbial community composition and substrate use in a highly weathered soil as affected by crop rotation and P fertilization

A better understanding of soil microbial processes is required to improve the synchrony between nutrient release from plant residues and crop demand. Phospholipid fatty acid analysis was used to investigate the effect of two crop rotations (continuous maize and maize-crotalaria rotation) and P fertilization (0 and 50 kg P ha⁻¹ yr⁻¹, applied as triple superphosphate) on microbial community composition in a highly weathered soil from western Kenya. Microbial substrate use in soils from the field experiment was compared in incubation experiments. Higher levels of soil organic matter and microbial biomass in the maize-crotalaria rotation were connected with higher total amounts of phospholipid fatty acids and an increase in the relative abundances of indicators for fungi and gram-negative bacteria. P fertilization changed the community profile only within the continuous maize treatment. The decomposition of glucose, cellulose and three plant residues (all added at 2.5 g C kg⁻¹ soil) proceeded faster in soil from the maize-crotalaria rotation, but differences were mostly transient. Microbial P and N uptake within one week increased with the water-soluble carbon content of added plant residues. More P and N were taken up by the greater microbial biomass in soil from the maize-crotalaria rotation than from continuous maize. Re-mineralization of nutrients during the decline of the microbial biomass increased also with the initial biological activity of the soil, but occurred only for a high quality plant residue within the half year incubation period. Compared to the effect of crop rotation, P fertilization had a minor effect on microbial community composition and substrate use.     

Soil microbial biomass and organic matter composition in soils under cultivation

To determine whether there is a relationship between the composition of soil organic matter and the activity of the soil microbial biomass, the composition of the organic matter in 12 typical arable soils in Northwest Germany was investigated by wet chemical analysis and CPMAS cross polarization magic angle spinning ¹³C-NMR spectroscopy. The data were correlated with the microbial biomass as estimated by substrate-induced respiration. A strong correlation between the microbial biomass and alkylic C compounds was observed (r=-0.960^***). Recalcitrant substances were enriched in this fraction, which were classified as humic acids according to the wet chemical procedure. The microbial decomposition of these humic acids is probably retarded, due to their chemical structure and/or physical bonding, when the soil microbial biomass activity is limited.     

Soil microbial biomass and activity under a potato crop fertilised with N with and without C

Summary A range of soil microbiological parameters were measured at intervals throughout the growing season of a potato crop. Treatments applied to the soil at sowing were zero N fertilisation of N fertilisation at 120 kg N ha^–1, either alone or supplemented with straw or sucrose at 1200 kg C ha^–1. C and N flushes determined by fumigation-incubation and fumigation-extraction, and substrate-induced respiration, were measured as indicators of microbial biomass. Microbial activity was measured as respiration (CO₂ production) and dehydrogenase activity (formazan production). The greatest effects were obtained from the addition of N plus sucrose. Both biomass size and activity were significantly stimulated for up to 25 days after incorporation, with the magnitude of the effects consistently diminishing over time. By 125 days after planting, there was no detectable legacy from any of the treatmentson any of the biomass parameters that were measured, and all values had reverted to those prevalent at planting. There was no consistent effect from adding N, either alone or supplemented with straw, on any of the biomass parameters. There was no evidence for crop-induced stimulation of the biomass. The experiment demonstrates that biomass is only influenced where the quantity, quality, and rate of incorporation of C into the soil is appropriate, in this case, only by adding C as a pulse of sucrose.     

Fate of gram-negative bacterial biomass in soil—mineralization and contribution to SOM

Soil microorganisms contribute to the formation of non-living soil organic matter (SOM) by metabolic transformation of plant-derived material. After cell death, their biomass components with a specific molecular character become incorporated into SOM imprinting its chemical properties, although this process has not yet been quantified. In order to elucidate the contribution to SOM formation, we investigated the fate of gram-negative bacterial model biomass (Escherichia coli usually introduced into soil with manure or feces) during incubation of soil with isotopically (¹³C) and genetically (lux gene) labeled cells. The decline of living cells was monitored by the loss of bioluminescence. The carbon turnover and mineralization was balanced by bulk soil stable isotope analysis, and the persistence of nucleic acids was investigated by PCR amplification of the lux gene. During incubation, the number of viable E. coli cells decreased rapidly (99.9% within the first 42 d) serving as substrate for other microorganisms or for the formation of SOM, and bioluminescent cells could only be detected during the first 56 d. However, the lux gene was still detected after 224 d, which indicates stabilization of DNA in SOM. Although the survival of E. coli in soil is limited, only about 65% of the added labeled biomass carbon was mineralized to ¹³CO₂ and 51% remained in soil after 224 d with an average ¹³C recovery of 117%. The amount of ¹³C found in the PLFA representative of living cells had decreased to 25% of the initial value, suggesting a proportional decrease of the ¹³C in the soil microbial biomass. The extent of this decrease is higher than the mineralization of the bulk E. coli C and thus the difference of around 25% has to be stabilized as metabolites, or in non-living SOM. The data provide evidence that the genetic information and a considerable part of the carbon from dying bacterial biomass were retained in both the soil microbial food web and in non-living SOM.     

Effects of plant species on microbial biomass phosphorus and phosphatase activity in a range of grassland soils

Soil P transformations are primarily mediated by plant root and soil microbial activity. A short-term (40 weeks) glasshouse experiment with 15 grassland soils collected from around New Zealand was conducted to examine the impacts of ryegrass (Lolium perenne) and radiata pine (Pinus radiata) on soil microbial properties and microbiological processes involved in P dynamics. Results showed that the effect of plant species on soil microbial parameters varied greatly with soil type. Concentrations of microbial biomass C and soil respiration were significantly greater in six out of 15 soils under radiata pine compared with ryegrass, while there were no significant effects of plant species on these parameters in the remaining soils. However, microbial biomass P (MBP) was significantly lower in six soils under radiata pine, while there were no significant effects of plant species on MBP in the remaining soils. The latter indicated that P was released from the microbial biomass in response to greater P demand by radiata pine. Levels of water soluble organic C were significantly greater in most soils under radiata pine, compared with ryegrass, which suggested that greater root exudation might have occurred under radiata pine. Activities of acid and alkaline phosphatase and phosphodiesterase were generally lower in most soils under radiata pine, compared with ryegrass. The findings of this study indicate that root exudation plays an important role in increased soil microbial activities, solubility of organic P and mineralization of organic P in soils under radiata pine.     

Modification of the original chloroform fumigation extraction technique to allow measurement of δC of soil microbial biomass carbon

In studies of the soil microbial biomass C by the chloroform fumigation extraction (CFE) technique, biomass C is routinely extracted using 0.5 M K₂SO₄ solution. The excessive amounts of salts contained in the extracting solution pause a significant challenge in using ¹³C isotope techniques to study the nature of C in the soil microbial biomass. This is because the salts can affect the oxidation process and therefore hamper accurate mass spectromic analysis of dried extracts. In spite of this, no standard protocol exists for preparing the K₂SO₄ extracts for ¹³C isotope analysis. We have modified the original CFE method to allow measurement of the δ¹³C of soil microbial biomass C by using 2 M KCl instead of the usual 0.5 M K₂SO₄ solution to extract biomass C. Excess salts were removed by dialysis in 100 molecular weight cut off membranes, after which the extracts were freeze-dried and their δ¹³C measured using a mass spectrometer. The soil microbial biomass C and δ¹³C of 2 M KCl extracts were compared with those of 0.5 M K₂SO₄ extracts. There was excellent agreement between organic C and δ¹³C estimates for dialyzed 2 M KCl and 0.5 M K₂SO₄ extracts, but the speed of dialysis for the latter was very slow, making use of the former more rapid. These results suggest that in procedures where oxidation with potassium dichromate is not critical to analysis of soluble C, 2 M KCl may be used in place of 0.5 M K₂SO₄ to extract soil microbial biomass C for δ¹³C measurements. The new procedure is relatively easy and rapid for obtaining indices for both pool sizes and turnover rates of soil microbial biomass C and provides a promising approach to study soil organic C.