Specific response of fungal and bacterial residues to one-season tillage and repeated slurry application in a permanent grassland soil

The dynamics of fungal and bacterial residues to a one-season tillage event in combination with manure application in a grassland soil are unknown. The objectives of this study were (1) to assess the effects of one-season tillage event in two field trials on the stocks of microbial biomass, fungal biomass, microbial residues, soil organic C (SOC) and total N in comparison with permanent grassland; (2) to determine the effects of repeated manure application to restore negative tillage effects on soil microbial biomass and residues. One trial was started 2 years before sampling and the other 5 years before sampling. Mouldboard ploughing decreased the stocks of SOC, total N, microbial biomass C, and microbial residues (muramic acid and glucosamine), but increased those of the fungal biomarker ergosterol in both trials. Slurry application increased stocks of SOC and total N only in the short-term, whereas the stocks of microbial biomass C, ergosterol and microbial residues were generally increased in both trials, especially in combination with tillage. The ergosterol to microbial biomass C ratio was increased by tillage, and decreased by slurry application in both trials. The fungal C to bacterial C ratio was generally decreased by these two treatments. The metabolic quotient qCO₂ showed a significant negative linear relationship with the microbial biomass C to SOC ratio and a significant positive relationship with the soil C/N ratio. The ergosterol to microbial biomass C ratio revealed a significant positive linear relationship with the fungal C to bacterial C ratio, but a negative one with the SOC content. Our results suggest that slurry application in grassland soil may promote SOC storage without increasing the role of saprotrophic fungi in soil organic matter dynamics relative to that of bacteria.     

Influence of long-term fertilisation and crop rotation on changes in fungal and bacterial residues in a tropical rice-field soil

Amino sugars, as a microbial residue biomarker, are highly involved in microbial-mediated soil organic matter formation. However, accumulation of microbial biomass and responses of bacterial and fungal residues to the management practices are different and poorly characterized in rice soils. The objectives of this study were to evaluate the effects of mineral fertiliser (MIN), farmyard manure (FYM) and groundnut oil cake (GOC) on crop yield and co-accumulation of microbial residues and microbial biomass under rice-monoculture (RRR) and rice–legume–rice (RLR) systems. In the organic fertiliser treatments and RLR, rice grain yield and stocks of soil and microbial nutrients were significantly higher than those of the MIN treatment and RRR, respectively. The increased presence of saprotrophic fungi in the organic fertiliser treatments and RRR was indicated by significantly increased ergosterol/C_mic ratio and extractable sulphur. In both crop rotation systems, the long-term application of FYM and GOC led to increased bacterial residues as indicated by greater accumulation of muramic acid. In contrast, the higher fungal C/bacterial C ratio and lower ergosterol/C_mic ratio in the MIN treatment, is likely caused by a shift within the fungal community structure towards ergosterol-free arbuscular mycorrhizal fungi (AMF). The organic fertiliser treatments contributed 22 % more microbial residual C to soil organic C compared to the MIN treatment. Our results suggest that the negative relationship between the ratios ergosterol/C_mic and fungal C/bacterial C encourages studying responses of both saprotrophic fungi and AMF when assessing management effects on the soil microbial community.     

Fungal/bacterial ratios in grasslands with contrasting nitrogen management

It is frequently hypothesised that high soil fungal/bacterial ratios are indicative for more sustainable agricultural systems. Increased F/B ratios have been reported in extensively managed grasslands. To determine the shifts in fungal/bacterial biomass ratio as influenced by grassland management and to find relations with nitrogen leaching potential, we sampled a two-year-old field experiment at an organic experimental farm in the eastern part of The Netherlands. The effect of crop (grass and grass-clover), N application rate (0, 40, 80, ) and manure type (no manure, farm yard manure and slurry) on the F/B ratio within three growing seasons was tested, as well as relations with soil and crop characteristics, nitrate leaching and partial N balance. Biomass of fungi and bacteria was calculated after direct counts using epifluorescence microscopy. Fungal and bacterial biomass and the F/B ratio were higher in grass than in grass-clover. The F/B ratio decreased with increasing N application rate and multiple regression analysis revealed a negative relationship with pH. Bacterial activity (measured as incorporation of [³H]thymidine and [¹⁴C]leucine into bacterial DNA and proteins) showed the exact opposite: an increase with N application rate and pH. Leaching increased with N application rate and was higher in grass-clover than in grass. Partial N balance was more positive at a higher N application rate and showed an inverse relationship with fungal biomass and F/B ratio. We conclude that the fungal/bacterial biomass ratio quickly responded to changes in management. Grasslands with higher N input showed lower F/B ratios. Grass-clover had a smaller fungal biomass and higher N leaching than grass. In general, a higher fungal biomass indicated a lower nitrogen leaching and a more negative partial N balance (or smaller N surplus), but more observations are needed to confirm the relationship between F/B ratio and sustainability.     

Long-term effects of organic farming on fungal and bacterial residues in relation to microbial energy metabolism

Samples from the bio-dynamic, bio-organic, and conventional trial, Therwil, Switzerland, were analyzed with the aim of determining the effects of organic land use management on the energy metabolism of the soil microbial biomass and on the fraction of microbial residues. The contents of adenylates, adenosine triphosphate (ATP), glucosamine, muramic acid, and galactosamine were significantly largest in the biodynamic organic farming (BYODIN) treatment and significantly lowest in the conventional farming treatment with inorganic fertilization (CONMIN). In contrast, the ergosterol-to-ATP ratio and fungal C-to-bacterial C ratios were significantly lowest in the BYODIN treatment and significantly largest in the CONMIN treatment. No clear treatment effects were observed for the ergosterol content and the adenylate energy charge (AEC), the ATP-to-microbial biomass C ratio and the ergosterol-to-fungal C ratio. Ergosterol, an indicator for saprotrophic fungal biomass, and fungal residues were significantly correlated. The microbial biomass carbon-to-nitrogen ratio showed a negative relationship with the AEC and strong positive relationships with the ratios ergosterol-to-microbial biomass C, ergosterol-to-ATP and fungal C-to-bacterial C. In conclusion, the long-term application of farmyard manure in combination with organic farming practices led to an increased accumulation of bacterial residues.     

Ergosterol and microbial biomass relationship in soil

Ergosterol and microbial biomass C were measured in 26 arable, 16 grassland and 30 forest soils. The ergosterol content ranged from 0.75 to 12.94 g g^-1 soil. The geometric mean ergosterol content of grassland and forest soils was around 5.5 g g^-1, that of the arable soils 2.14 g g^-1. The ergosterol was significantly correlated with biomass C in the entire group of soils, but not in the subgroups of grassland and forest soils. The geometric mean of the ergosterol: microbial biomass C ratio was 6.0 mg g^-1, increasing in the order grassland (5.1), arable land (5.4) and woodland (7.2). The ergosterol:microbial biomass C ratio had a strong negative relationship with the decreasing cation exchange capacity and soil pH, indicating that the fungal part of the total microbial biomass in soils increased when the buffer capacity decreased. The average ergosterol concentration calculated from literature data was 5.1 mg g^-1 fungal dry weight. Assuming that fungi contain 46% C, the conversion factor from micrograms ergosterol to micrograms fungal biomass C is 90. For soil samples, neither saponification of the extract nor the more effective direct saponification during extraction seems to be really necessary.     

The measurement of soil fungal:bacterial biomass ratios as an indicator of ecosystem self-regulation in temperate meadow grasslands

 There is much interest in the development of agricultural land management strategies aimed at enhancing reliance on ecosystem self-regulation rather than on artificial inputs such as fertilisers and pesticides. This study tested the usefulness of measures of soil microbial biomass and fungal:bacterial biomass ratios as indicators of effective conversion from an intensive grassland system, reliant mainly on fertilisers for crop nutrition, to a low-input system reliant mainly on self-regulation through soil biological pathways of nutrient turnover. Analysis of soils from a wide range of meadow grassland sites in northern England, along a gradient of long-term management intensity, showed that fungal:bacterial biomass ratios (measured by phospholipid fatty acid analysis; PLFA) were consistently and significantly higher in the unfertilised than the fertilised grasslands. There was also some evidence that microbial biomass, measured by chloroform fumigation and total PLFA, was higher in the unfertilised than in the fertilised grasslands. It was also found that levels of inorganic nitrogen (N), in particular nitrate-N, were significantly higher in the fertilised than in the unfertilised grasslands. However, microbial activity, measured as basal respiration, did not differ between the sites. A field manipulation trial was conducted to determine whether the reinstatement of traditional management on an improved mesotrophic grassland, for 6 years, resulted in similar changes in the soil microbial community. It was found that neither the cessation of fertiliser applications nor changes in cutting and grazing management significantly affected soil microbial biomass or the fungal:bacterial biomass ratio. It is suggested that the lack of effects on the soil microbial community may be related to high residual fertility caused by retention of fertiliser N in the soil. On the basis of these results it is recommended that following the reinstatement of low-input management, the measurement of a significant increase in the soil fungal:bacterial biomass ratio, and perhaps total microbial biomass, may be an indicator of successful conversion to a grassland system reliant of self-regulation. Received: 4 May 1998     

Microbial growth rate measurements reveal that land-use abandonment promotes a fungal dominance of SOM decomposition in grazed Mediterranean ecosystems

The present study investigated the effects of land-use abandonment on the soil decomposer community of two grazed Mediterranean ecosystems (an annual grassland with scattered holm oaks and a low-density shrubland). To test the influence of grazing abandonment, a set of plots within each site were fenced and kept undisturbed during 4–5 years, during which above-ground plant community structure was monitored. After that, soil samples were collected from grazed and abandoned plots corresponding to the three different soil conditions: away from (“grass”) and below tree canopies (“oak”) within the annual grassland, and from the shrubland (“shrub”). Soil samples were split into two different layers (0–5 and 5–15 cm) and then analyzed for saprotrophic fungal (acetate into ergosterol incorporation) and bacterial (leucine incorporation) growth rates. Ergosterol content (as a fungal biomass estimator) and a standard set of soil chemistry variables were also measured. After 5 years of grazing exclusion, saprotrophic fungal growth rate clearly increased in both grass and oak surface layers whereas bacterial growth rate was not altered. This translated into significantly higher fungal-to-bacterial (F/B) growth rate ratios within the ungrazed plots. Similar trends were observed for the shrub soils after 4 years of exclusion. On the contrary, abandonment of grazing had negligible effects on the ergosterol content, as well as on the soil chemical variables (soil organic carbon, total N, C/N ratio, and pH), in all the three soil conditions assessed. These results indicated a shift toward a more fungal-dominated decomposer activity in soils following cessation of grazing and highlighted the sensitivity of the microbial growth rate parameters to changes associated with land use. Moreover, there were evidences of a faster fungal biomass turnover in the ungrazed plots, which would reflect an accelerated, though not bigger, fungal channel in soil organic matter mineralization.     

Spatial changes of soil fungal and bacterial biomass from a sub-alpine coniferous forest to grassland in a humid, sub-tropical region

 Fungal and bacterial biomass were determined across a gradient from a forest to grassland in a sub-alpine region in central Taiwan. The respiration-inhibition and ergosterol methods for the evaluation of the microbial biomass were compared. Soil fungal and bacterial biomass both significantly decreased (P<0.05) with the shift of vegetation from forest to grassland. Fungal and bacterial respiration rates (evolved CO₂) were, respectively, 89.1 μl CO₂ g^–1 soil h^–1 and 55.1 μl CO₂ g^–1 soil h^–1 in the forest and 36.7 μl CO₂ g^–1 soil h^–1 and 35.7 μl CO₂ g^–1 soil h^–1 in the grassland surface soils (0–10 cm). The fungal ergosterol content in the surface soil decreased from the forest zone (108 μg g^–1) to the grassland zone (15.9 μg g^–1). A good correlation (R ²=0.90) was exhibited between the soil fungal ergosterol content and soil fungal CO₂ production (respiration) for all sampling sites. For the forest and grassland soil profiles, microbial biomass (respiration and ergosterol) declined dramatically with depth, ten- to 100-fold from the surface organic horizon to the deepest mineral horizon. With respect to fungal to bacterial ratios for the surface soil (0–10 cm), the forest zone had a significantly (P<0.05) higher ratio (1.65) than the grassland zone (1.05). However, there was no fungal to bacterial ratio trend from the surface horizon to the deeper mineral horizons of the soil profiles. Received: 30 March 2000     

Humus macro-morphology and soil microbial community changes along a 130-yr-old Fagus sylvatica chronosequence

We aimed to characterize humus macro-morphology and the associated soil microbial community within the unmodified litter (OL), the fragmented and humified layers (FH) and the organo-mineral (A) layer along a beech (Fagus sylvatica L.) forest chronosequence with four stand age-classes (15-, 65-, 95-, 130-yr-old) in Normandy, France. Humus macro-morphology was described with 36 quantitative and semi-quantitative variables. We measured microbial biomass N (N_mic), microbial N quotient (N_mic-to-N_t), fungal ergosterol, bacterial and fungal DNA using 16S and 18S rDNA real-time qPCR and evaluated the potential metabolic profile of heterotrophic bacteria within each soil layer and stand age-class. The log-transform ergosterol/fungal DNA ratio (EFR index) was used as an indicator related to active fungal biomass and the fungal/bacterial (F/B) ratio was calculated from qPCR results. There was a shift from mull (mainly dysmull) to moder humus forms along the chronosequence. While the N_mic did not change significantly, the N_mic-to-N_t decreased along the chronosequence in the OL layer. Ergosterol content increased in FH and A layers and the F/B ratio increased in the FH layer with increasing beech forest age. The EFR index was significantly higher in the OL and A layers of the oldest stands, whereas the highest EFR index in the FH layer occurred in the 15-yr-old stands. The functional diversity of heterotrophic bacteria was greater within OL and FH layers of 130-yr-old stands, but highest in the A layer of 15-yr-old stands while the Average Well Color Development remained stable for all soil layers. We found significant correlations between macro-morphology and microbial variables, especially between FH-based morphology and fungal biomass. Our main results are that beech forest maturation is accompanied by (1) an increase in fungal biomass in the FH layers and, (2) an increase in heterotrophic bacteria functional diversity in the organic layers. We have identified key macro-morphology variables that are good predictors of the structural and functional profile of the soil microbial community during beech forest development.     

Microbial community composition and activity in different Alpine vegetation zones

In alpine environments, climate change may alter vegetation composition as well as the quantity and quality of plant litter, which in turn may affect microbial community composition and functioning. In this study, we analyzed soil microbial community composition and its activity along a vegetation gradient (900-1900 m above sea level (a.s.l.)) in the Austrian Limestone Alps. Soil pH and C:N ratios were significantly different under different plant communities and ranged from 3.9 to 6.1 and from 29 to 17, respectively. The highest amounts of microbial biomass, estimated by the sum of microbial phospholipid fatty acids (total PLFAs), were found at sites with high pH and low C:N ratio, i.e. in alpine grassland and beech forest sites (3.9 ± 0.05 and 3.4 ± 0.7 μmol per g organic carbon (OC), respectively), and the lowest amounts were found at sites with low pH and high C:N ratio, i.e. sites with high percentage of conifers and acidophilic vegetation (around 2 μmol (g OC)⁻¹). Total and bacterial PLFAs as well as microbial activity (dimethyl sulphoxide reduction) did not show consistent altitudinal trends. The fungal PLFA 18:2ω6,9 was significantly higher in the forest sites (between 9.2 and 6.7 mol%) compared to the shrubland and grassland sites (between 4.5 and 2.3 mol%). A similar trend was found for ergosterol contents. As a consequence, the bacterial to fungal biomass ratio increased significantly from forest sites to shrubland and grassland sites. Expected future upward migration of the tree line in alpine environments in response to climate warming will therefore increase the abundance of fungi in these ecosystems.     

Effect of fungal to bacterial biomass ratio on the relationship between CO2 evolution and total soil microbial biomass

The relationship between the fungal: bacterial biomass ratio and the metabolic quotient (qCO₂) was studied in three different soils. In addition, the effect of the fungal: bacterial biomass ratio on the relationship between CO₂ evolution and the size of the soil microbial biomass was examined. Soil samples were collected from three experimental fields amended with various organic materials (Yatsugatake, Ibaraki, and Tochigi fields). The range of the fungal:bacterial biomass ratio in the Yatsugatake and Ibaraki fields was small (1.54–2.24 and 1.11–1.71, respectively), but it was large in the Tochigi field (1.18–3.75). We found a high negative correlation between this ratio and the metabolic quotient (qCO₂=2.10–0.361 (fungal:bacterial biomass ratio), R=–0.851, P<0.01) in the Tochigi field. Therefore, we suggest tha qCO₂ decreases with an increase in the fungal:bacterial biomass ratio, which may be due to a higher efficiency of substrate C use by fungal flora in comparison with bacterial flora. In the Yatsugatake and Ibaraki fields, there was a high positive correlation between CO₂ evolution and total microbial biomass. In contrast, no correlation was observed between these two parameters in the Tochigi field, probably reflecting the wide range of values for the fungal:bacterial biomass ratio. From the results obtained, we suggest that the fungal: bacterial biomass ratio is an important factor regulating the relationship between CO₂ evolution and the size of the microbial biomass.     

Decomposition of wheat straw differing in nitrogen content in soils under conventional and organic farming management

An incubation experiment was carried out to investigate the interactions of two straw qualities differing in N content and two soils differently accustomed to straw additions. One soil under conventional farming management (CFM) regularly received straw, the other soil under organic farming management (OFM) only farmyard manure. The soils of the two sites were similar in texture, pH, cation‐exchange capacity, and glucosamine content. The soil from the OFM site had higher contents of organic C, total N, muramic acid, microbial biomass C and N (C_mic and N_mic), but a lower ergosterol content and lower ratios ergosterol to C_mic and fungal C to bacterial C. The straw from the CFM had threefold higher contents of total N, twofold higher contents of ergosterol and glucosamine, a 50% higher content of muramic acid, and a 30% higher fungal C–to–bacterial C ratio. The straw amendments led to significant net increases in C_mic, N_mic, and ergosterol. Microbial biomass C showed on average a 50% higher net increase in the organic than in the CFM soil. In contrast, the net increases in N_mic and ergosterol differed only slightly between the two soils after straw amendment. The CO₂ evolution from the CFM soil always exceeded that from the OFM, by 50% or 200 µg (g soil)^–1 in the nonamended control soil and by 55% or additional 600 µg (g soil)^–1 in the two straw treatments. In both soils, 180 µg g^–1 less was evolved as CO₂‐C from the OFM straw. The metabolic quotient qCO₂ was nearly twice as high in the control and in the straw treatments of the CFM soil compared with that of the OFM. In contrast, the difference in qCO₂ was insignificant between the two straw qualities. Differences in the fungal‐community structure may explain to a large extent the difference in the microbial use of straw in the two soils under different managements.     

Soil organic matter,microbial properties,and aggregate stability under annual and perennial pastures

The use of annually sown pastures to provide winter forage is common in dairy farming in many regions of the world. Loss of organic matter and soil structural stability due to annual tillage under this management may be contributing to soil degradation. The comparative effects of annual ryegrass pastures (conventionally tilled and resown each year), permanent kikuyu pastures and undisturbed native vegetation on soil organic matter content, microbial size and activity, and aggregate stability were investigated on commercial dairy farms in the Tsitsikamma region of the Eastern Cape, South Africa. In comparison with soils under sparse, native grassy vegetation, those under both annual ryegrass and permanent kikuyu pasture had higher soil organic matter content on the very sandy soils of the eastern end of the region. By contrast, in the higher rainfall, western side, where the native vegetation was coastal forest, there was a loss of organic matter under both types of pasture. Nonetheless, soil organic C, K₂SO₄-extractable C, microbial biomass C, basal respiration, arginine ammonification and fluorescein diacetate hydrolysis rates and aggregate stability were less under annual than permanent pastures at all the sites. These results reflect the degrading effect of annual tillage on soil organic matter and the positive effect of grazed permanent pasture on soil microbial activity and aggregation. Soil organic C, microbial biomass C, K₂SO₄-extractable C, basal respiration and aggregate stability were significantly correlated with each other. The metabolic quotient and percentage of organic C present as microbial biomass C were generally poorly correlated with other measured properties but negatively correlated with one another. It was concluded that annual pasture involving conventional tillage results in a substantial loss of soil organic matter, soil microbial activity and soil physical condition under dairy pastures and that a system that avoids tillage needs to be developed.     

Impact of activated charcoal and tannin amendments on microbial biomass and residues in an irrigated sandy soil under arid subtropical conditions

Effects of goat manure application combined with charcoal and tannins, added as feed additives or mixed directly, on microbial biomass, microbial residues and soil organic matter were tested in a 2-year field trial on a sandy soil under Omani irrigated subtropical conditions. Soil microbial biomass C revealed the fastest response to manure application, followed by microbial residue C, estimated on the basis of fungal glucosamine and bacterial muramic acid, and finally soil organic C (SOC), showing the slowest, but still significant response. At the end of the trial, microbial biomass C reached 220 μg g^?1 soil, i.e. contents similar to sandy soils in temperate humid climate, and showed a relatively high contribution of saprotrophic fungi, as indicated by an average ergosterol to microbial biomass C ratio of 0.35 % in the manure treatments. The mean fungal C to bacterial C ratio was 0.55, indicating bacterial dominance of microbial residues. This fraction contributed relatively low concentrations of between 20 and 35 % to SOC. Charcoal added to manure increased the SOC content and the soil C/N ratio, but did not affect any of the soil microbial properties analysed. Tannins added to manure reduce the 0.5 M K₂SO₄-extractable N to N total ratio compared to manure control. These effects occurred regardless of whether charcoal or tannins were supplied as feed additive or directly mixed to the manure.     

Particle size fractionation of fungal and bacterial biomass in subalpine grassland and forest soils

Characterization of soil aggregates according to particle size fractions is a useful tool in process-oriented research into soil organic matter and biological properties. Substrate-induced respiration (SIR) inhibition was used to quantify microbial, fungal and bacterial biomass in particle size fractions of soils ranging from forest to grassland in a subalpine region of central Taiwan. In addition, ergosterol content was determined in the same samples to verify fungal biomass measured by SIR inhibition technique. Surface soil (0–10 cm) was fractionated into four particle size fractions: coarse sand (250–2000 μm), fine sand (53–250 μm), silt (2–53 μm) and clay (0.2–2 μm). The larger sized fractions (>250 μm and 53–250 μm) contained higher levels of fungal ergosterol than the smaller sized ones (2–53 μm and 0.2–2 μm). The largest particle size fraction (250–2000 μm) from all studied habitats showed the highest level of microbial biomass, with no clear trend in microbial biomass level among the other size fractions. SIR-calculated fungal biomass level and ergosterol converted fungal biomass content were positively correlated (r=0.71, p<0.05), and such correlation decreased as biomass levels were high. Ratios of fungi to bacteria ranged between 0.6 and 1.3 in fractions obtained in this study. This study indicates a high variability of microbial (fungal and bacterial) biomass level among particle size fractions in soil, and that the large-sized fractions tend to contain a high level of microbial biomass in a given ecosystem.     

Drying and rewetting effects on soil microbial community composition and nutrient leaching

The effects of a dry-rewetting event (D/RW) on soil microbial properties and nutrient release by leaching from two soils taken from adjacent grasslands with different histories of management intensity were studied. These were a low-productivity grassland, with no history of fertilizer application and a high-productivity grassland with a history of high fertilizer application, referred to as unimproved and improved grassland, respectively. The use of phospholipid fatty acid analysis (PLFA) revealed that the soil of the unimproved grassland had a significantly greater microbial biomass, and a greater abundance of fungi relative to bacteria than did the improved grassland. Soils from both grasslands were maintained at 55% water holding capacity (WHC) or dried to 10% WHC and rewetted to 55% WHC, and then sampled on days 1, 3, 9, 16, 30 and 50 after rewetting. The D/RW stress significantly reduced microbial biomass carbon (C), fungal PLFA and the ratio of fungal-to-bacterial PLFA in both soils. In contrast, D/RW increased microbial activity, but had no effect on total PLFA and bacterial PLFA in either soil. Microbial biomass nitrogen (N) was reduced significantly by D/RW in both soils, but especially in those of the improved grassland. In terms of nutrient leaching, the D/RW stress significantly increased concentrations of dissolved organic C and dissolved organic N in leachates taken from the improved soil only. This treatment increased the concentration of dissolved inorganic N in leachate of both soils, but this effect was most pronounced in the improved soil. Overall, our data show that D/RW stress leads to greater nutrient leaching from improved than from unimproved grassland soils, which have a greater microbial biomass and abundance of fungi relative to bacteria. This finding supports the notion that soils with more fungal-rich communities are better able to retain nutrients under D/RW than are their intensively managed counterparts with lower fungal to bacterial ratios, and that D/RW can enhance nutrient leaching with potential implications for water quality.     

Impact of land-use change on nitrogen mineralization in subalpine grasslands in the Southern Alps

 A field study was conducted to investigate the effect of abandonment of management on net N mineralization (NNM) in subalpine meadows. NNM, soil microbial biomass N (SMBN), fungal biomass and physicochemical characteristics (total C, total N, dissolved organic carbon (DOC) and pH) were determined in surface (0–10 cm) soil from May to October 1997 in an intensively managed and an abandoned meadow at 1770 m a.s.l.. The cumulative NNM was lower in the abandoned area and ranged from 150 to 373 and from 25 to 85 μg N g^–1 soil in the intensively managed and the abandoned areas, respectively. The total organic C increased in the abandoned area, while total N showed no difference between abandoned and managed meadow. SMBN showed no difference between the investigated sites, whereas ergosterol, a measure of fungal biomass, increased significantly at the abandoned site. The cumulative NNM was negatively correlated with total organic C, C : N ratio, DOC and ergosterol content, and positively correlated with the NH₄ ⁺-N content of soil. The decrease in NNM at the abandoned site may be explained by the lower availability of N in substrates characterized by a high C : N ratio which, together with a decrease in pH in the litter layer, may have increased fungal biomass. Received: 8 January 1999     

Determination of microbial biomass and fungal and bacterial distribution in cattle faeces

As an important component of organic fertilizers, animal faeces require methods for determining diet effects on their microbial quality to improve nutrient use efficiency in soil and to decrease gaseous greenhouse emissions to the environment. The objectives of the present study were (i) to apply the chloroform fumigation extraction (CFE) method for determining microbial biomass in cattle faeces, (ii) to determine the fungal cell-membrane component ergosterol, and (iii) to measure the cell-wall components fungal glucosamine and bacterial muramic acid as indices for the microbial community structure. Additionally, ergosterol and amino sugar data provide independent control values for the reliability of the microbial biomass range obtained by the CFE method. A variety of extractant solutions were tested for the CFE method to obtain stable extracts and reproducible microbial biomass C and N values, leading to the replacement of the original 0.5 M K₂SO₄ extractant for 0.05 M CuSO₄. The plausibility of the data was assessed in a 28-day incubation study at 25 °C with cattle faeces of one heifer, where microbial biomass C and N were repeatedly measured together with ergosterol. Here, the microbial biomass indices showed dynamic characteristics and possible shifts in the microbial community. In faeces of five different heifers, the mean microbial biomass C/N ratio was 5.6, the mean microbial biomass to organic C ratio was 2.2%, and the mean ergosterol to microbial biomass C ratio was 1.1‰. Ergosterol and amino sugar analysis revealed a significant contribution of fungi, with a percentage of more than 40% to the microbial community. All three methods are expected to be suitable tools for analysing the quality of cattle faeces.     

Abundance, production and stabilization of microbial biomass under conventional and reduced tillage

Soil tillage practices affect the soil microbial community in various ways, with possible consequences for nitrogen (N) losses, plant growth and soil organic carbon (C) sequestration. As microbes affect soil organic matter (SOM) dynamics largely through their activity, their impact may not be deduced from biomass measurements alone. Moreover, residual microbial tissue is thought to facilitate SOM stabilization, and to provide a long term integrated measure of effects on the microorganisms. In this study, we therefore compared the effect of reduced (RT) and conventional tillage (CT) on the biomass, growth rate and residues of the major microbial decomposer groups fungi and bacteria. Soil samples were collected at two depths (0-5 cm and 5-20 cm) from plots in an Irish winter wheat field that were exposed to either conventional or shallow non-inversion tillage for 7 growing seasons. Total soil fungal and bacterial biomasses were estimated using epifluorescence microscopy. To separate between biomass of saprophytic fungi and arbuscular mycorrhizae, samples were analyzed for ergosterol and phospholipid fatty acid (PLFA) biomarkers. Growth rates of saprophytic fungi were determined by [¹⁴C]acetate-in-ergosterol incorporation, whereas bacterial growth rates were determined by the incorporation of ³H-leucine in bacterial proteins. Finally, soil contents of fungal and bacterial residues were estimated by quantifying microbial derived amino sugars. Reduced tillage increased the total biomass of both bacteria and fungi in the 0-5 cm soil layer to a similar extent. Both ergosterol and PLFA analyses indicated that RT increased biomass of saprophytic fungi in the 0-5 cm soil layer. In contrast, RT increased the biomass of arbuscular mycorrhizae as well as its contribution to the total fungal biomass across the whole plough layer. Growth rates of both saprotrophic fungi and bacteria on the other hand were not affected by soil tillage, possibly indicating a decreased turnover rate of soil microbial biomass under RT. Moreover, RT did not affect the proportion of microbial residues that were derived from fungi. In summary, our results suggest that RT can promote soil C storage without increasing the role of saprophytic fungi in SOM dynamics relative to that of bacteria.     

Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature

We conducted a laboratory incubation of forest (Scots pine (Pinus sylvestris) or beech (Fagus sylvatica)), grassland (Trifolium repens/Lolium perenne) and arable (organic and conventional) soils at 5 and 25 °C. We aimed to clarify the mechanisms of short-term (2-weeks) nitrogen (N) cycling processes and microbial community composition in relation to dissolved organic carbon (DOC) and N (DON) availability and selected soil properties. N cycling was measured by ¹⁵N pool dilution and microbial community composition by denaturing gradient gel electrophoresis (DGGE), phospholipid fatty acid (PLFA) and community level physiological profiles (CLPP). Soil DOC increased in the order of arable<grassland<forest soil while DON and gross N fluxes increased in the order of forest<arable<grassland soil; land use had no affect on respiration rate. Soil DOC was lower, while respiration, DON and gross N fluxes were higher at 25 than 5 °C. Gross N fluxes, respiration and bacterial biomass were all positively correlated with each other. Gross N fluxes were positively correlated with pH and DON, and negatively correlated with organic matter, fungal biomass, DOC and DOC/DON ratio. Respiration rate was positively correlated with bacterial biomass, DON and DOC/DON ratio. Multiple linear modelling indicated that soil pH, organic matter, bacterial biomass, DON and DOC/DON ratio were important in predicting gross N mineralization. Incubation temperature, pH and total-C were important in predicting gross nitrification, while gross N mineralization, gross nitrification and pH were important in predicting gross N immobilization. Permutation multivariate analysis of variance indicated that DGGE, CLPP and PLFA profiles were all significantly (P<0.05) affected by land use and incubation temperature. Multivariate regressions indicated that incubation temperature, pH and organic matter content were important in predicting DGGE, CLPP and PLFA profiles. PLFA and CLPP were also related to DON, DOC, ammonium and nitrate contents. Canonical correlation analysis showed that PLFA and CLPP were related to differences in the rates of gross N mineralization, gross nitrification and soil respiration. Our study indicates that vegetation type and/or management practices which control soil pH and mediate dissolved organic matter availability were important predictors of gross N fluxes and microbial composition in this short-term experiment.