Measured soil organic matter fractions can be related to pools in the RothC model

Understanding the response of soil organic carbon (SOC) to environmental and management factors is necessary for estimating the potential of soils to sequester atmospheric carbon. Changes over time in the amount and distribution of SOC fractions with different turnover rates can be estimated by means of soil SOC models such as RothC, which typically consider two to five SOC pools. Ideally, these pools should correspond to measurable SOC fractions. The aim of this study was to test the relationship between SOC pools used in RothC and fractions separated through a fractionation procedure. A total of 123 topsoil samples from agricultural sites (arable land, grassland and alpine pasture) across Switzerland were used. A combination of physical and chemical methods resulted in two sensitive (particulate organic matter and dissolved organic carbon), two slow (carbon associated to clay and silt or stabilized in aggregates) and one passive (oxidation-resistant carbon) SOM fractions. These fractions were compared with the estimated equilibrium model pools when the corresponding soils were modelled with RothC. Analysis revealed strong correlations between SOC in measured fractions and modelled pools. Spearman's rank correlation coefficients varied between 0.82 for decomposable plant materials (DPM), 0.76 for resistant plant materials (RPM), 0.99 for humified organic matter (HUM) and biomass (BIO), and 0.73 for inert organic matter (IOM). The results show that the proposed fractionation procedure can be used with minor adaptations to identify measurable SOC fractions, which can be used to initialize and evaluate RothC for a wide range of site conditions.     

Acid hydrolysis of easily dispersed and microaggregate-derived silt- and clay-sized fractions to isolate resistant soil organic matter

The current paradigm in soil organic matter (SOM) dynamics is that the proportion of biologically resistant SOM will increase when total SOM decreases. Recently, several studies have focused on identifying functional pools of resistant SOM consistent with expected behaviours. Our objective was to combine physical and chemical approaches to isolate and quantify biologically resistant SOM by applying acid hydrolysis treatments to physically isolated silt‐ and clay‐sized soil fractions. Microaggegrate‐derived and easily dispersed silt‐ and clay‐sized fractions were isolated from surface soil samples collected from six long‐term agricultural experiment sites across North America. These fractions were hydrolysed to quantify the non‐hydrolysable fraction, which was hypothesized to represent a functional pool of resistant SOM. Organic C and total N concentrations in the four isolated fractions decreased in the order: native > no‐till > conventional‐till at all sites. Concentrations of non‐hydrolysable C (NHC) and N (NHN) were strongly correlated with initial concentrations, and C hydrolysability was found to be invariant with management treatment. Organic C was less hydrolysable than N, and overall, resistance to acid hydrolysis was greater in the silt‐sized fractions compared with the clay‐sized fractions. The acid hydrolysis results are inconsistent with the current behaviour of increasing recalcitrance with decreasing SOM content: while %NHN was greater in cultivated soils compared with their native analogues, %NHC did not increase with decreasing total organic C concentrations. The analyses revealed an interaction between biochemical and physical protection mechanisms that acts to preserve SOM in fine mineral fractions, but the inconsistency of the pool size with expected behaviour remains to be fully explained.     

Location and chemical composition of stabilized organic carbon in topsoil and subsoil horizons of two acid forest soils

The ¹⁴C age of soil organic matter is known to increase with soil depth. Therefore, the aim of this study was to examine the stabilization of carbon compounds in the entire soil profile using particle size fractionation to distinguish SOM pools with different turnover rates. Samples were taken from a Dystric Cambisol and a Haplic Podzol under forest, which are representative soil types under humid climate conditions. The conceptual approach included the analyses of particle size fractions of all mineral soil horizons for elemental composition and chemical structure of the organic matter by ¹³C cross-polarization magic angle spinning nuclear magnetic resonance (CPMAS NMR) spectroscopy. The contribution of phenols and hydroxyalkanoic acids, which represent recalcitrant plant litter compounds, was analyzed after CuO oxidation.In the Dystric Cambisol, the highest carbon concentration as well as the highest percentage of total organic carbon are found in the <6.3 μm fractions of the B and C horizons. In the Haplic Podzol, carbon distribution among the particle size fractions of the Bh and Bvs horizons is influenced by the adsorption of dissolved organic matter. A relationship between the carbon enrichment in fractions <6.3 μm and the ¹⁴C activity of the bulk soil indicates that stabilization of SOM occurs in fine particle size fractions of both soils. ¹³C CPMAS NMR spectroscopy shows that a high concentration of alkyl carbon is present in the fine particle size fractions of the B horizons of the Dystric Cambisol. Decreasing contribution of O-alkyl and aromatic carbon with particle size as well as soil depth indicates that these compounds are not stabilized in the Dystric Cambisol. These results are in accordance with data obtained by wet chemical analyses showing that cutin/suberin-derived hydroxyalkanoic acids are preserved in the fine particle size fractions of the B horizons. The organic matter composition in particle size fractions of the top- and subsoil horizons of the Haplic Podzol shows that this soil is acting like a chromatographic system preserving insoluble alkyl carbon in the fine particle size fractions of the A horizon. Small molecules, most probably organic acids, dominate in the fine particle size fractions of the C horizons, where they are stabilized in clay-sized fractions most likely due to the interaction with the mineral phase. The characterization of lignin-derived phenols indicated, in accordance with the NMR measurements, that these compounds are not stabilized in the mineral soil horizons.     

Reproducibility of a soil organic carbon fractionation method to derive RothC carbon pools

Fractionation of soil is undertaken to isolate organic carbon with distinct functional properties, such as stability and turnover times. Soil organic carbon (SOC) fractionation helps us to understand better the response of SOC to changes in land use, management or climate. However, fractionation procedures are often poorly defined and there is little information available on their reproducibility in different laboratories. In a ring trial, we assessed the reproducibility of a SOC fractionation method introduced by Zimmermann et al. (2007). The isolated fractions were linked to the model pool sizes of the Rothamsted carbon model (RothC). We found significant differences between six laboratories for all five defined fractions in three different soils with coefficients of variation ranging from 14 to 138%. During ultrasonic dispersion, the output power (energy per unit time) was identified as an important factor controlling the distribution of SOC within these five fractions, while commonly only the output energy is standardized. The amount of water used to wet‐sieve dispersed soil slurry significantly influenced the amount of extracted dissolved organic carbon (DOC). We therefore suggest using a fixed amount of power for ultrasonic dispersion (20 W) and a minimum amount of water for wet sieving (2000 ml). RothC pool sizes were predicted from the measured fractions and compared with RothC equilibrium pool size distributions. This model initialization using measured SOC fractions, however, led to an over‐estimation of stable RothC SOC pools when compared with pool size distributions derived from RothC equilibrium runs under a bare fallow soil model simulation. To improve the isolation of particulate organic matter from stable mineral‐bound organic matter, we suggest that the density should be increased from 1.8 to 2.0 g cm^?3 in the density fractionation step. We formulated a modified fractionation procedure, which aims specifically to enhance reproducibility across laboratories and to improve the match of the isolated SOC fractions with RothC's SOC pools.     

Chemical composition of young and old carbon pools throughout Cambisol and Luvisol profiles under forests

The long-term storage of soil organic matter (SOM) in forest soils is still poorly understood. In this study, particle size fractionation in combination with accelerator mass spectroscopy (AMS) and solid state ¹³C nuclear magnetic resonance (NMR) spectroscopy was applied to investigate organic carbon (OC) stabilisation in Cambisol and Luvisol profiles under spruce (Picea abies) and beech (Fagus sylvatica L.) forests. In most samples, OC was preferentially associated with <2 μm fractions. Throughout soil profiles the contribution of OC in the clay fraction to the total OC increased from 27%-53% in A horizons to 44-86% in E, B and EB horizons. The 200-2000 μm fractions from all sites and all depths showed a percentage of modern C (pmC)>100. They were enriched in ¹⁴C owing to high inputs of recent material from leaves and roots. Clearly less active material was associated with <2 and 2-20 μm fractions. This demonstrated that the particle size fractionation procedure applied to our study was capable to isolate a young OC fraction in all samples. The pmC values were strongly decreasing with depth but the decrease was much more pronounced in the fine fractions. The <2 and 2-20 μm fractions of B, E and EB horizons revealed radiocarbon ages between 512 and 4745 years before present which indicated that the SOM in those horizons was little affected by the recent vegetation. The major components of labile and stable SOM pools in topsoils and subsoils were always O/N-alkyl C (28-53%) and alkyl C (14-48%) compounds. NMR spectra of bulk soils and particle size fractions indicated that high alkyl C and O/N-alkyl C proportions throughout the soil profile are typical of Cambisols and Luvisols which were not subjected to regular burning. A relation between radiocarbon age and chemical composition throughout soil profiles was not observed. This suggests that the long-term stabilisation of SOM is mainly controlled by the existence of various mechanisms of protection offered by the soil matrix and soil minerals but not by the chemical structure of SOM itself.     

Turnover of soil organic matter and of microbial biomass under C3-C4 vegetation change: Consideration of C fractionation and preferential substrate utilization

Two processes contribute to changes of the δ¹³C signature in soil pools: ¹³C fractionation per se and preferential microbial utilization of various substrates with different δ¹³C signature. These two processes were disentangled by simultaneously tracking δ¹³C in three pools - soil organic matter (SOM), microbial biomass, dissolved organic carbon (DOC) - and in CO₂ efflux during incubation of 1) soil after C₃-C₄ vegetation change, and 2) the reference C₃ soil.The study was done on the Ap horizon of a loamy Gleyic Cambisol developed under C₃ vegetation. Miscanthus giganteus - a perennial C₄ plant - was grown for 12 years, and the δ¹³C signature was used to distinguish between ‘old’ SOM (>12 years) and ‘recent’ Miscanthus-derived C (<12 years). The differences in δ¹³C signature of the three C pools and of CO₂ in the reference C₃ soil were less than 1‰, and only δ¹³C of microbial biomass was significantly different compared to other pools. Nontheless, the neglecting of isotopic fractionation can cause up to 10% of errors in calculations. In contrast to the reference soil, the δ¹³C of all pools in the soil after C₃-C₄ vegetation change was significantly different. Old C contributed only 20% to the microbial biomass but 60% to CO₂. This indicates that most of the old C was decomposed by microorganisms catabolically, without being utilized for growth. Based on δ¹³C changes in DOC, CO₂ and microbial biomass during 54 days of incubation in Miscanthus and reference soils, we concluded that the main process contributing to changes of the δ¹³C signature in soil pools was preferential utilization of recent versus old C (causing an up to 9.1‰ shift in δ¹³C values) and not ¹³C fractionation per se.Based on the δ¹³C changes in SOM, we showed that the estimated turnover time of old SOM increased by two years per year in 9 years after the vegetation change. The relative increase in the turnover rate of recent microbial C was 3 times faster than that of old C indicating preferential utilization of available recent C versus the old C.Combining long-term field observations with soil incubation reveals that the turnover time of C in microbial biomass was 200 times faster than in total SOM. Our study clearly showed that estimating the residence time of easily degradable microbial compounds and biomarkers should be done at time scales reflecting microbial turnover times (days) and not those of bulk SOM turnover (years and decades). This is necessary because the absence of C reutilization is a prerequisite for correct estimation of SOM turnover. We conclude that comparing the δ¹³C signature of linked pools helps calculate the relative turnover of old and recent pools.     

Density separation of soil organic matter across three land uses in calcareous soils of Iran

ABSTRACT

The aim of this study was to examine the usefulness of physical and chemical fractionation in quantifying soil organic matter (SOM) in different stabilized fraction pools. Soil samples from three land use types in Lorestan province, Southwest Iran were examined to account for the amount of organic carbon and nitrogen in different SOM fractions. Size/density separation and chemical oxidation methods were applied to separate the SOM fractions including particulate organic matter (POM), Si + C (silt and clay), DOC (dissolved organic C), rSOM (oxidation-resistant organic carbon and nitrogen) and S + SA (sand and stable aggregates). The values obtained for TOC, TN, and HWC were highest in forest lands followed by the range and agricultural lands. Among the SOM fractions, S + SA showed the highest values (5.75, 5.77 and 20.6 g kg^?1 for agriculture, range and forest lands respectively) followed by POM, Si + C, rSOM, and DOC. The concentrations of C and N in the labile fractions obtained the higher values than in the stabilized fractions. Forest lands had the highest amounts of organic C and N among all fractions whereas agricultural lands showed highest values for inorganic C content of soils in different fractions.     

Temperature sensitivity of soil organic matter decomposition—what do we know?

Soil organic matter (SOM) represents one of the largest reservoirs of carbon on the global scale. Thus, the temperature sensitivity of bulk SOM and of different SOM fractions is a key factor determining the response of the terrestrial carbon balance to climatic warming. We condense the available knowledge about the potential temperature sensitivity and the actual temperature sensitivity of decomposition in situ, which ultimately depends on substrate availability. We review and evaluate contradictory results of estimates of the temperature sensitivity of bulk SOM and of different SOM fractions. The contradictory results demonstrate a need to focus research on biological and physicochemical controls of SOM stabilisation and destabilisation processes as a basis for understanding strictly causal relationships and kinetic properties of key processes that determine pool sizes and turnover rates of functional SOM pools. The current understanding is that temperature sensitivity of SOM mineralisation is governed by the following factors: (1) the stability of SOM, (2) the substrate availability, which is determined by the balance between input of organic matter, stabilisation and mineralisation of SOM, (3) the physiology of the soil microflora, its efficiency in substrate utilisation and its temperature optima and (4) physicochemical controls of destabilisation and stabilisation processes, like pH and limitation of water, oxygen and nutrient supply. As soil microflora is functionally omnipotent and most SOM is of high age and stability, the temperature dependence of stable SOM pools is the central question that determines C stocks and stock changes under global warming.     

Addition of Leucaena-KX2 mulch in a shaded coffee agroforestry system increases both stable and labile soil C fractions

Agroforestry systems have the potential to increase sequestration of atmospheric carbon dioxide (CO₂) as soil organic carbon (SOC) because of the increased rates of organic matter addition and retention. However, few studies have characterized the relative stability of sequestered SOC in soil. We characterized SOC storage in aggregate size and chemical stability classes to estimate the relative stability of SOC pools after the addition of Leucaena-KX2 pruning residues (mulch) from 2006 to 2008 in a shaded coffee agroforestry system in Hawaii. Soil samples were separated by microaggregate isolation, density flotation and dispersion, and acid hydrolysis, resulting in five distinct fractions that differed in relative stability: coarse particulate organic matter (POM), fine POM, microaggregate-protected POM, silt + clay hydrolyzable soil organic matter (SOM), and silt + clay non-hydrolyzable SOM. With mulch addition, the fine POM fraction increased. There was also a shift in the proportion of SOC to more stable silt + clay fractions. In the absence of mulch there was no significant change in SOC fractions. Given that the turnover time of SOC in silt + clay fractions is on the order of decades to centuries, the potential benefits of active shade management and mulching compensate for the loss of C sequestration in tree biomass from pollarding.     

Organo‐mineral associations in temperate soils: Integrating biology,mineralogy, and organic matter chemistry

We summarize progress with respect to (1) different approaches to isolate, extract, and quantify organo‐mineral compounds from soils, (2) types of mineral surfaces and associated interactions, (3) the distribution and function of soil biota at organo‐mineral surfaces, (4) the distribution and content of organo‐mineral associations, and (5) the factors controlling the turnover of organic matter (OM) in organo‐mineral associations from temperate soils. Physical fractionation achieves a rough separation between plant residues and mineral‐associated OM, which makes density or particle‐size fractionation a useful pretreatment for further differentiation of functional fractions. A part of the OM in organo‐mineral associations resists different chemical treatments, but the data obtained cannot readily be compared among each other, and more research is necessary on the processes underlying resistance to treatments for certain OM components. Studies using physical‐fractionation procedures followed by soil‐microbiological analyses revealed that organo‐mineral associations spatially isolate C sources from soil biota, making quantity and quality of OM in microhabitats an important factor controlling community composition. The distribution and activity of soil microorganisms at organo‐mineral surfaces can additionally be modified by faunal activities. Composition of OM in organo‐mineral associations is highly variable, with loamy soils having generally a higher contribution of polysaccharides, whereas mineral‐associated OM in sandy soils is often more aliphatic. Though highly reactive towards Fe oxide surfaces, lignin and phenolic components are usually depleted in organo‐mineral associations. Charred OM associated with the mineral surface contributes to a higher aromaticity in heavy fractions. The relative proportion of OC bound in organo‐mineral fractions increases with soil depth. Likewise does the strength of the bonding. Organic molecules sorbed to the mineral surfaces or precipitated by Al are effectively stabilized, indicated by reduced susceptibility towards oxidative attack, higher thermal stability, and lower bioavailability. At higher surface loading, organic C is much better bioavailable, also indicated by little ¹⁴C age. In the subsurface horizons of the soils investigated in this study, Fe oxides seem to be the most important sorbents, whereas phyllosilicate surfaces may be comparatively more important in topsoils. Specific surface area of soil minerals is not always a good predictor for C‐stabilization potentials because surface coverage is discontinuous. Recalcitrance and accessibility/aggregation seem to determine the turnover dynamics in fast and intermediate cycling OM pools, but for long‐term OC preservation the interactions with mineral surfaces, and especially with Fe oxide surfaces, are a major control in all soils investigated here.     

Soil organic matter fractionation as a tool for predicting nitrogen mineralization in silty arable soils

After decades of searching for a practical method to estimate the N mineralization capacity of soil, there is still no consistent methodology. Indeed it is important to have practical methods to estimate soil nitrogen release for plant uptake and that should be appropriate, less time consuming, and cost effective for farmers. We fractionated soil organic matter (SOM) to assess different fractions of SOM as predictors for net N mineralization measured from repacked (disturbed) and intact (undisturbed) soil cores in 14 weeks of laboratory incubations. A soil set consisting of surface soil from 18 cereal and root‐cropped arable fields was physically fractionated into coarse and fine free particulate OM (coarse fPOM and fine fPOM), intra‐microaggregate particulate OM (iPOM) and silt and clay sized OM. The silt and clay sized OM was further chemically fractionated by oxidation with 6% NaOCl to isolate an oxidation‐resistant OM fraction, followed by extraction of mineral bound OM with 10% HF (HF‐res OM). Stepwise multiple linear regression yielded a significant relationship between the annual N mineralization (kg N/ha) from undisturbed soil and coarse fPOM N (kg N/ha), silt and clay N (kg N/ha) and its C:N ratio (R² = 0.80; P < 0.01). The relative annual N mineralization (% of soil N) from disturbed soils was related to coarse fPOM N, HF‐res OC (% of soil organic carbon) and its C:N ratio (R² = 0.83; P < 0.01). Physical fractions of SOM were thus found to be the most useful predictors for estimating the annual N mineralization rate of undisturbed soils. However, the bioavailability of physical fractions was changed due to the disturbance of soil. For disturbed soils, a presumed stable chemical SOM fraction was found to be a relevant predictor indicating that this fraction still contains bio‐available N. The latter prompted a revision in our reasoning behind selective oxidation and extraction as tools for characterizing soil organic N quality with respect to N availability. Nonetheless, the present study also underscores the potential of a combined physical and chemical fractionation procedure for isolating and quantifying N fractions which preferentially contribute to bulk soil N mineralization. The N content or C:N ratio of such fractions may be used to predict N mineralization in arable soils.     

A simple wet chemical extraction procedure to characterize soil organic matter (Som): 2. Reproducibility and verification

Abstract

In a previous communication in this journal, a fractionation scheme of soil organic matter (SOM) was presented (1). The goal of this paper is to discuss the reproducibility and verification of this procedure with an expanded data set of 150 samples. Litter compound analysis (LCA) is appropriate to detect small differences in the decomposition degree at a quantitative level which are not detectable with SOM morphology. In contrast, humic compound analysis (HCA) is not appropriate to characterize SOM with regard to quantitative data, because the detected carbon (C) (C recovery rate <800 mg/g TOC) reflects only parts of the total SOM. In addition selected, SOM fractions are determined with both extraction procedures. When counting C as polysaccharides in the LCA and as fulvic acid in the HCA, this gives recovery rates of much more than 100% (>1,200 mg/g TOC). These errors induce both an under‐ or an over‐estimation of C within the combination of the litter and humic compound analyses (LCA+HCA) and the conversion to 100% should not be used. Because of the method problems and limited chemical information provided with HCA, we propose using LCA and additional analytical instuments (e.g. NMR, pyrolysis) to further characterize structures in the non‐litter substances of the SOM pool.     

Response of soil organic matter dynamics to conversion from tropical forest to grassland as determined by long-term incubation

Understanding soil organic carbon (SOC) responses to land-use changes requires knowledge of the sizes and mean residence times (MRT) of specific identifiable SOC pools over a range of decomposability. We examined pool sizes and kinetics of active and slow pool carbon (C) for tropical forest and grassland ecosystems on Barro Colorado Island, Panama, using long-term incubations (180 days) of soil and stable C isotopes. Chemical fractionation (acid hydrolysis) was applied to assess the magnitude of non-hydrolysable pool C (NHC). Incubation revealed that both grassland and forest soil contained a small proportion of active pool C (<1%), with MRT of ~6 days. Forest and grassland soil apparently did not differ considerably with respect to their labile pool substrate quality. The MRT of slow pool C in the upper soil layer (0–10 cm) did not differ between forest and grassland, and was approximately 15 years. In contrast, changes in vegetation cover resulted in significantly shorter MRT of slow pool C under grassland (29 years) as compared to forest (53 years) in the subsoil (30–40 cm). The faster slow pool turnover rate is probably associated with a loss of 30% total C in grassland subsoil compared to the forest. The NHC expressed as a percentage of total C varied between 54% and 64% in the surface soil and decreased with depth to ~30%. Grassland NHC had considerably longer MRTs (120 to 320 years) as compared to slow pool C. However, the functional significance of the NHC pool is not clear, indicating that this approach must be applied cautiously. An erratum to this article can be found at     

Distribution and thermal stability of physically and chemically protected organic matter fractions in soils across different ecosystems

Accrual of carbon (C) and nitrogen (N) in soil is a significant and realizable management option to mitigate climate change; thus, a clear understanding of the mechanisms controlling the persistence of C and N in soil organic matter (SOM) across different ecosystems has never been more needed. Here, we investigated SOM distribution between physically and chemically stabilized fractions in soils from a variety of ecosystems (i.e., coniferous and broadleaved forest soils, grassland soils, technosols, and agricultural soils). Using elemental and thermal analyses, we examined changes in the quantity and quality of physically fractionated SOM pools characterized by different mechanisms of protection from decomposition. Independently of the ecosystem type, most of the organic C and total N were found in the mineral-associated SOM pool, known to be protected mainly by chemical mechanisms. Indexes of thermal stability and C/N ratio of this heavy SOM fraction were lower (especially in agricultural soils) compared to light SOM fractions found free or occluded in aggregates, and suggested a marked presence of inherently labile compounds. Our results confirm that the association of labile organic molecules with soil minerals is a major stabilization mechanism of SOM, and demonstrate that this is a generalizable finding occurring across different mineral soils and ecosystems.     

Free and intra‐aggregate organic matter as indicators of soil quality change in volcanic soils under contrasting crop rotations

Soil physical fractionation techniques may provide indicators of changing soil organic carbon (SOC) content; however, they have not been widely tested on volcanic soils (Andisols). In this study, we assessed two fractions as potential indicators in volcanic soils, using two sites in Chile converted from natural grassland to arable and mixed crop rotations, 8 and 16 yr previously. In the 8‐yr experiment, SOC had declined under all rotations, with smaller changes where the rotation included 3 or 5 yr of perennial pasture. Whereas the average SOC was only 76% of the level in the preceding natural grassland, the corresponding value after 16 yr for the second site was 98% (and 93% under continuous arable), probably reflecting its high allophane clay content. The fractionation procedure tested proved applicable to both Andisols, but the intra‐aggregate light fraction (IA‐SOM, isolated in sodium iodide solution at 1.80 g/cm³ after ultrasonic dispersion) accounted for a very small proportion of total SOC (<1%). We suggest that in Andisols, the free light fraction (FR‐SOM, isolated in sodium iodide at solution of the same density, but prior to ultrasonic dispersion) is stabilised to a greater extent than in nonvolcanic soils, and the intra‐aggregate fraction plays a more minor role as a pool of intermediate turnover. The relative value of each fraction needs to be confirmed through dynamic experiments, using more sites, and including situations where SOC content is initially low.     

Factors affecting the molecular structure and mean residence time of occluded organics in a lithosequence of soils under ponderosa pine

Occluded, or intra-aggregate, soil organic matter (SOM) comprises a significant portion of the total C pool in forest soils and often has very long mean residence times (MRTs). However, occluded C characteristics vary widely among soils and the genesis and composition of the occluded organic matter pool are not well understood. This work sought to define the major controls on the composition and MRT of occluded SOM in western U.S. conifer forest soils with specific focus on the influence of soil mineral assemblage and aggregate stability. We sampled soils from a lithosequence of four parent materials (rhyolite, granite, basalt, and dolostone) under Pinus ponderosa. Three pedons were excavated to the depth of refusal at each site and sampled by genetic horizon. After density separation at 1.8 g cm⁻³ into free/light, occluded and mineral fractions, the chemical nature and mean residence time of organics in each fraction were compared. SOM chemistry was explored through the use of stable isotope analyses, ¹³C NMR, and pyrolysis GC/MS. Soil charcoal content estimates were based on ¹³C NMR analyses. Estimates of SOM MRT were based on steady-state modeling of SOM radiocarbon abundance measurements. Across all soils, the occluded fraction was 0.5–5 times enriched in charcoal in comparison to the bulk soil and had a substantially longer MRT than either the mineral fraction or the free/light fraction. These results suggest that charcoal from periodic burning is the primary source of occluded organics in these soils, and that the structural properties of charcoal promote its aggregation and long-term preservation. Surprisingly, aggregate stability, as measured through ultrasonic dispersion, was not correlated with occluded SOM abundance or MRT, perhaps raising questions of how well laboratory measurements of aggregate stability capture the dynamics of aggregate turnover under field conditions. Examination of the molecular characteristics of the occluded fraction was more conclusive. Occluded fraction composition did not change substantially with soil mineral assemblage, but was increasingly enriched in charcoal with depth relative to bulk SOM. Enrichment levels of ¹³C and ¹⁵N suggested a similar degree of microbial processing for the free/light and occluded fractions, and molecular structure of occluded and free/light fractions were also similar aside from charcoal enrichment in the occluded fraction. Results highlight the importance of both fire and aggregate formation to the long-term preservation of organics in western U.S. conifer forests which experience periodic burning, and suggest that the composition of occluded SOM in these soils is dependent on fire and the selective occlusion of charcoal.     

How relevant is recalcitrance for the stabilization of organic matter in soils?

Traditionally, the selective preservation of certain recalcitrant organic compounds and the formation of recalcitrant humic substances have been regarded as an important mechanism for soil organic matter (SOM) stabilization. Based on a critical overview of available methods and on results from a cooperative research program, this paper evaluates how relevant recalcitrance is for the long‐term stabilization of SOM or its fractions. Methodologically, recalcitrance is difficult to assess, since the persistence of certain SOM fractions or specific compounds may also be caused by other stabilization mechanisms, such as physical protection or chemical interactions with mineral surfaces. If only free particulate SOM obtained from density fractionation is considered, it rarely reaches ages exceeding 50 y. Older light particles have often been identified as charred plant residues or as fossil C. The degradability of the readily bioavailable dissolved or water‐extractable OM fraction is often negatively correlated with its content in aromatic compounds, which therefore has been associated with recalcitrance. But in subsoils, dissolved organic matter aromaticity and biodegradability both are very low, indicating that other factors or compounds limit its degradation. Among the investigated specific compounds, lignin, lipids, and their derivatives have mean turnover times faster or similar as that of bulk SOM. Only a small fraction of the lignin inputs seems to persist in soils and is mainly found in the fine textural size fraction (<20 µm), indicating physico‐chemical stabilization. Compound‐specific analysis of ¹³C : ¹²C ratios of SOM pyrolysis products in soils with C3‐C4 crop changes revealed no compounds with mean residence times of > 40–50 y, unless fossil C was present in substantial amounts, as at a site exposed to lignite inputs in the past. Here, turnover of pyrolysis products seemed to be much longer, even for those attributed to carbohydrates or proteins. Apparently, fossil C from lignite coal is also utilized by soil organisms, which is further evidenced by low ¹⁴C concentrations in microbial phospholipid fatty acids from this site. Also, black C from charred plant materials was susceptible to microbial degradation in a short‐term (60 d) and a long‐term (2 y) incubation experiment. This degradation was enhanced, when glucose was supplied as an easily available microbial substrate. Similarly, SOM mineralization in many soils generally increased after addition of carbohydrates, amino acids, or simple organic acids, thus indicating that stability may also be caused by substrate limitations. It is concluded that the presented results do not provide much evidence that the selective preservation of recalcitrant primary biogenic compounds is a major SOM‐stabilization mechanism. Old SOM fractions with slow turnover rates were generally only found in association with soil minerals. The only not mineral‐associated SOM components that may be persistent in soils appear to be black and fossil C.     

When is a measured soil organic matter fraction equivalent to a model pool?

Dynamic simulation models are important tools for rationalizing complex changes in soil organic matter. Most such models for organic matter can be described as having either a pool structure or a continuous one. A pool structure can offer advantages in ease of use and transferability. Some pools are easily measured, whereas others cannot be measured directly. New methods of fractionation are being developed in an attempt to base models on measurable fractions. A requirement for such models is a demonstration that the measured fraction and model pool are equivalent. A measured fraction is equivalent to a model pool only if, within acceptable limits, it is unique as well as non‐composite. If the measured fraction is not unique, describing it as a separate pool adds no extra information, while the added complexity can increase propagation of errors. If it is composite then the characteristics of the fraction will change with changing environment as a result of changing proportions of subpools. This will produce a model that cannot be applied without deriving parameters afresh: such a model is of greatly reduced value. Here we develop methods to examine if a fraction is both unique and non‐composite. The tests for unique and composite pools were applied to the SUNDIAL (s imu lation of n itrogen d ynamics i n a rable l and) model of organic matter and nitrogen turnover in soil. Results suggest that the debris, biomass and humus pools are unique, but biomass and humus are composed of two or more subpools. This worked example illustrates how, given suitable data, any pool‐based model can be tested by these methods.     

Invertebrate control of soil organic matter stability

 The control of soil organic matter (SOM) stability by soil invertebrates is evaluated in terms of their impact on the inherent recalcitrance, accessibility to microorganisms, and interaction with stabilizing substances of organic compounds. Present knowledge on internal (ingestion and associated transformations) and external (defecation, constructions) control mechanisms of soil invertebrates is also reviewed. Soil animals contribute to the stabilization and destabilization of SOM by simultaneously affecting chemical, physical, and microbial processes over several orders of magnitude. A very important aspect of this is that invertebrates at higher trophic levels create feedback mechanisms that modify the spatio-temporal framework in which the micro-food web affects SOM stability. Quantification of non-trophic and indirect effects is thus essential in order to understand the long-term effects of soil biota on SOM turnover. It is hypothesized that the activities of invertebrates which lead to an increase in SOM stability partly evolved as an adaptation to the need for increasing the suitability of their soil habitat. Several gaps in knowledge are identified: food selection and associated changes in C pools, differential effects on SOM turnover, specific associations with microorganisms, effects on dissolution and desorption reactions, humus-forming and humus-degrading processes in gut and faeces, and the modification of invertebrate effects by environmental variables. Future studies must not be confined merely to a mechanistic analysis of invertebrate control of SOM stability, but also pay considerable attention to the functional and evolutionary aspects of animal diversity in soil. This alone will allow an integration of biological expertise in order to develop new strategies of soil management which can be applied under a variety of environmental conditions. Received: 6 April 1999     

Organic matter in density fractions of water-stable aggregates in silty soils: Effect of land use

The location of soil organic matter (SOM) within the soil matrix is considered a major factor determining its turnover, but quantitative information about the effects of land cover and land use on the distribution of SOM at the soil aggregate level is rare. We analyzed the effect of land cover/land use (spruce forest, grassland, wheat and maize) on the distribution of free particulate organic matter (POM) with a density <1.6 g cm⁻³ (free POM_<1.6), occluded particulate organic matter with densities <1.6 g cm⁻³ (occluded POM_<1.6) and 1.6-2.0 g cm⁻³ (occluded POM_1.6-2.0) and mineral-associated SOM (>2.0 g cm⁻³) in size classes of slaking-resistant aggregates (53-250, 250-1000, 1000-2000, >2000 μm) and in the sieve fraction <53 μm from silty soils by applying a combined aggregate size and density fractionation procedure. We also determined the turnover time of soil organic carbon (SOC) fractions at the aggregate level in the soil of the maize site using the ¹³C/¹²C isotope ratio. SOM contents were higher in the grassland soil aggregates than in those of the arable soils mainly because of greater contents of mineral-associated SOM. The contribution of occluded POM to total SOC in the A horizon aggregates was greater in the spruce soil (23-44%) than in the grassland (11%) and arable soils (19%). The mass and carbon content of both the free and occluded POM fractions were greater in the forest soil than in the grassland and arable soils. In all soils, the C/N ratios of soil fractions within each aggregate size class decreased in the following order: free POM_<1.6>occluded POM_<1.6-2.0>mineral-associated SOM. The mean age of SOC associated with the <53 μm mineral fraction of water-stable aggregates in the Ap horizon of the maize site varied between 63 and 69 yr in aggregates >250 μm, 76 yr in the 53-250 μm aggregate class, and 102 yr in the sieve fraction <53 μm. The mean age of SOC in the occluded POM increased with decreasing aggregate size from 20 to 30 yr in aggregates >1000 μm to 66 yr in aggregates <53 μm. Free POM had the most rapid rates of C-turnover, with residence times ranging from 10 yr in the fraction >2000 μm to 42 yr in the fraction 53-250 μm. Results indicated that SOM in slaking-resistant aggregates was not a homogeneous pool, but consisted of size/density fractions exhibiting different composition and stability. The properties of these fractions were influenced by the aggregate size. Land cover/land use were important factors controlling the amount and composition of SOM fractions at the aggregate level.