Microbial activity and community structure of a soil after heavy metal contamination in a model forest ecosystem

We assessed the effects of chronic heavy metal (HM) contamination on soil microbial communities in a newly established forest ecosystem. We hypothesized that HM would affect community function and alter the microbial community structure over time and that the effects are more pronounced in combination with acid rain (AR). These hypotheses were tested in a model forest ecosystem consisting of several tree species (Norway spruce, birch, willow, and poplar) maintained in open top chambers. HMs were added to the topsoil as filter dust from a secondary metal smelter and two types of irrigation water acidity (ambient rain vs. acidified rain) were applied during four vegetation periods. HM contamination strongly impacted the microbial biomass (measured with both fumigation-extraction and quantitative lipid biomarker analyses) and community function (measured as basal respiration and soil hydrolase activities) of the soil microbial communities. The most drastic effect was found in the combined treatment of HM and AR, although soil pH and bioavailable HM contents were comparable to those of treatments with HM alone. Analyses of phospholipid fatty acids (PLFAs) and terminal restriction fragment length polymorphisms (T-RFLPs) of PCR-amplified 16S ribosomal DNA showed that HM treatment affected the structure of bacterial communities during the 4-year experimental period. Very likely, this is due to the still large bioavailable HM contents in the HM contaminated topsoils at the end of the experiment.     

Substrate inputs and pH as factors controlling microbial biomass, activity and community structure in an arable soil

Our aim was to determine whether the smaller biomasses generally found in low pH compared to high pH arable soils under similar management are due principally to the decreased inputs of substrate or whether some factor(s) associated with pH are also important. This was tested in a soil incubation experiment using wheat straw as substrate and soils of different pHs (8.09, 6.61, 4.65 and 4.17). Microbial biomass ninhydrin-N, and microbial community structure evaluated by phospholipid fatty acids (PLFAs), were measured at 0 (control soil only), 5, 25 and 50 days and CO₂ evolution up to 100 days. Straw addition increased biomass ninhydrin-N, CO₂ evolution and total PLFA concentrations at all soil pH values. The positive effect of straw addition on biomass ninhydrin-N was less in soils of pH 4.17 and 4.65. Similarly total PLFA concentrations were smallest at the lowest pH. This indicated that there is a direct pH effect as well as effects related to different substrate availabilities on microbial biomass and community structure. In the control soils, the fatty acids 16:1ω5, 16:1ω7c, 18:1ω7c&9t and i17:0 had significant and positive linear relationships with soil pH. In contrast, the fatty acids i15:0, a15:0, i16:0 and br17:0, 16:02OH, 18:2ω6,9, 17:0, 19:0, 17:0c9,10 and 19:0c9,10 were greatest in control soils at the lowest pHs. In soils given straw, the fatty acids 16:1ω5, 16:1ω7c, 15:0 and 18:0 had significant and positive linear relationships with pH, but the concentration of the monounsaturated 18:1ω9 PLFA decreased at the highest pHs. The PLFA profiles indicative of Gram-positive bacteria were more abundant than Gram-negative ones at the lowest pH in control soils, but in soils given straw these trends were reversed. In contrast, straw addition changed the microbial community structures least at pH 6.61. The ratio: [fungal PLFA 18:2w6,9]/[total PLFAs indicative of bacteria] indicated that fungal PLFAs were more dominant in the microbial communities of the lowest pH soil. In summary, this work shows that soil pH has marked effects on microbial biomass, community structure, and response to substrate addition.     

Microbial community structure and functionality under peanut-based cropping systems in a sandy soil

Little information is available on soil microbial and biochemical properties, important for understanding nutrient cycling and organic matter dynamics, as affected by different peanut cropping systems and how they relate to soil functioning. Thus, we studied a Tifton loamy sand (fine-loamy, kaolinitic, thermic Plinthic Kandiudults) in Georgia, which is first in peanut production in USA, after 5 and 8 years under continuous cotton (Gossypium hirsutum, L) (CtCtCt), cotton–cotton–peanut (CtCtPt), corn (Zea mays L.)–peanut–cotton (CrPtCt), peanut–peanut–cotton (PtPtCt), and continuous peanut (PtPtPt). Soil organic carbon (OC) at 0–20 cm was already higher under PtPtPt (average, 8.7 g C kg⁻¹ soil), PtPtCt (average, 7.7 g C kg⁻¹ soil), and CrPtCt (average, 7.8 g C kg⁻¹ soil) compared with CtCtPt (average, 4.7 g C kg⁻¹ soil) and CtCtCt (average, 3.3 g C kg⁻¹ soil). Similarly, alkaline phosphatase, acid phosphatase, and phosphodiesterase as a group showed higher activities under PtPtPt, PtPtCt, and CrPtCt than under CtCtPt and CtCtCt. The activities of glycosidases (α-galactosidase, β-glucosidase, and β-glucosaminidase) as a group were more sensitive to the cropping systems than phosphastases and showed a distinctive cropping system separation as follows: PtPtPt = CrPtCt > PtPtCt > CtCtPt > CtCtCt. Similar to OC and microbial biomass C trends, distinctive differences were found in the microbial community structure of this sandy soil after 8 years between peanut-based cropping systems (CrPtCt, PtPtCt, and PtPtPt) and cotton-based cropping systems (CtCtCt and CtCtPt) as indicated by the fatty acid methyl esters profiles. Trade names and company names are included for the benefit of the reader and do not infer any endorsement or preferential treatment of the product by USDA-ARS.     

Influence of repeated prescribed burning on the soil fungal community in an eastern Australian wet sclerophyll forest

A long-term prescribed burning experiment, incorporating replicated plots that receive burning biennially (2 yr burn) or quadrennially (4 yr burn) and unburned controls, has been maintained in a wet sclerophyll forest at Peachester, Queensland, Australia since 1972. In 2003 we extracted DNA from soil collected from the experimental plots and investigated the influence of the burning on the soil fungal community by comparing denaturing gradient gel electrophoresis (DGGE) profiles of PCR-amplified partial rDNA internal transcribed spacer regions (ITS1). Canonical analysis of principal coordinates (CAP) of the DGGE profiles of the upper 10 cm of the soil profile grouped the data strongly according to treatment, indicating that both burning regimes significantly altered fungal community structure compared to the unburned controls. In contrast, no obvious trend was observed for soil from a depth of 10-20 cm of the profile. Sequencing of selected DGGE bands found no obvious patterns of presence/absence of taxonomic groups between the treatments. Analysis of soil nitrogen and carbon by mass spectrometry indicated that total soil C and N, along with both gross and net N mineralisation, were significantly lower in 2 yr plots compared to control and 4 yr plots.     

Decreases in soil moisture and organic matter quality suppress microbial decomposition following a boreal forest fire

Climate warming is projected to increase the frequency and severity of wildfires in boreal forests, and increased wildfire activity may alter the large soil carbon (C) stocks in boreal forests. Changes in boreal soil C stocks that result from increased wildfire activity will be regulated in part by the response of microbial decomposition to fire, but post-fire changes in microbial decomposition are poorly understood. Here, we investigate the response of microbial decomposition to a boreal forest fire in interior Alaska and test the mechanisms that control post-fire changes in microbial decomposition. We used a reciprocal transplant between a recently burned boreal forest stand and a late successional boreal forest stand to test how post-fire changes in abiotic conditions, soil organic matter (SOM) composition, and soil microbial communities influence microbial decomposition. We found that SOM decomposing at the burned site lost 30.9% less mass over two years than SOM decomposing at the unburned site, indicating that post-fire changes in abiotic conditions suppress microbial decomposition. Our results suggest that moisture availability is one abiotic factor that constrains microbial decomposition in recently burned forests. In addition, we observed that burned SOM decomposed more slowly than unburned SOM, but the exact nature of SOM changes in the recently burned stand are unclear. Finally, we found no evidence that post-fire changes in soil microbial community composition significantly affect decomposition. Taken together, our study has demonstrated that boreal forest fires can suppress microbial decomposition due to post-fire changes in abiotic factors and the composition of SOM. Models that predict the consequences of increased wildfires for C storage in boreal forests may increase their predictive power by incorporating the observed negative response of microbial decomposition to boreal wildfires.     

Surface and subsurface microbial biomass, community structure and metabolic activity as a function of soil depth and season

Microbial biomass, size and community structure along with an estimate of microbial activity and soil chemical parameters were determined at three depths in two soils (e.g. sandy loam Ultic Hapludalf and silt loam Mollic Hapludalf) replicated three times under one winter and summer season. Microbial biomass and community structure were estimated from phospholipid-PO₄ content and fatty acid methyl ester (FAME) measurements. Microbial activity and assimilative capacity were estimated using a ³H-acetate incorporation into phospholipids and by incubating the soil samples at the average winter and summer temperatures, 3 and 20 °C, respectively. We found that the size of the microbial biomass in both the surface and the subsurface soils was not significantly affected by the seasonal variation but activity increased by as much as 83% at the summer temperatures in the surface soil. We demonstrated using FAME analysis that for both soils seasonal changes in the subsurface microbial community occurred. These findings suggest that winter conditions will shift the population activity level in both the surface and subsurface systems and the biochemical structure of the community in the subsurface. In all cases, the inorganic chemical properties of the soil, as a function of season, remained constant. The greatly increased activity of microbial population at the higher temperature will favor the capacity of the system to utilize nutrients or organic materials that may enter soil. During low temperature seasons the capacity of either surface or subsurface soils to assimilate materials is generally diminished but the reduction reflects changes in metabolism and not a reduced biomass size.     

中国中亚热带杉树及常绿阔叶林中焚烧对养分流失及土壤肥力的影响

A Chinese fir forest(Cunninghamia lanceolata,CF) and an evergreen broadleaved forest(EB) located in Fujian Province,southeastern China,were examined following slash burning to compare nutrient capital and topsoil properties with pre-burn levels.After fire,nutrient(N,P and K) removal from burining rsidues was estimated at 302.5kg ha^-1 in the CF and 644.8kg ha^-1 in the EB.Fire reduced the topsoil capitals of total N and P by about 20% and 10%,respectively,in both forests,while K capital was incresed in the topsoils of both forests following fire.Total site nutrient loss through surface erosion was 28.4kg(N) ha^-1 ,84.kg(P)ha^-1 and 328.7kg(K) ha^-1 in the CF.In the EB,the losses of total N,P and K were 58.5,10.5 and 396.3kg ha^-1,respectively,Improvement of soil structure and increase in mineralization of nutrients associated with increasesd microbe number and enzyme acitvityes and elecvated soil respiration occurred 5 day after fire.Howerver,organic matter and available nutrient contents and most of other soil parameters declined ont year after fire on the burned CF and EB topsoils.These rsults suggest that short-tmerm site productivity can be stimulated immediately.but reduced subsequently by soil and water losses,especially in south China,where high-intensity precipitation,steep slopes and fragile soil can be expected,Therefore,the silvicultural measurements should be developed in plantation management.     

Exotic earthworms alter soil microbial community composition and function

Exotic earthworms can profoundly alter soil carbon (C) and nitrogen (N) dynamics in northern temperate forests, but the mechanisms explaining these responses are not well understood. We compared the soil microbial community (SMC) composition (measured as PLFAs) and enzyme activity between paired earthworm-invaded and earthworm-free plots in northern hardwood forests of New York, USA. We hypothesized that differences in SMCs and enzyme activity between plots would correspond with differences in soil C content and C:N ratios. Relative abundance of several bacterial (mostly gram-positive) PLFAs was higher and that of two fungal PLFAs was lower in earthworm compared to reference plots, largely because of earthworm incorporation of the organic horizon into mineral soil. In surface mineral soil earthworms increased arbuscular mycorrhizal fungi (AMF) and gram-positive bacterial PLFAs, and decreased fungal (mostly saprotrophic) and several bacterial (gram-negative and non-specific) PLFAs. Earthworms also increased the activities of cellulolytic relative to lignolytic enzymes in surface mineral soil, and the relationships between enzyme activities and components of the SMC suggest a substrate-mediated effect on the SMC and its metabolism of C. A highly significant relationship between components of the SMC and soil C:N also suggests that earthworms reduce soil C:N through functional and compositional shifts in the SMC. Finally, changes in AMF abundances were linked to phosphatase activity, suggesting that earthworms do not necessarily inhibit P-acquisition by AMF-associated plants in our study system. We conclude that the combined influence of earthworm-related changes in physical structure, accessibility and chemistry of organic matter, and relative abundance of certain groups of fungi and bacteria promote C metabolism, in particular by increasing the activities of cellulolytic vs. lignolytic enzymes.     

Microbial community response to soil solarization in Nepal's rice-wheat cropping system

The Indo-Gangetic Plains of South Asia support 13.5 million hectares of rice-wheat cropping systems, which currently feed over one billion people. Intensified agriculture has resulted in a more than two-fold increase in rice and wheat yields since the 1970s; however, this continuous cropping has also exacerbated weed, pest and disease problems. Soil solarization is an accessible, low-risk management practice for small-holder farmers that has ameliorated these problems in some settings and has the potential to dramatically improve yields. Field trials were conducted at two sites in Nepal to test whether soil solarization: (i) had a lasting effect on soil bacterial, fungal and nematode communities; (ii) altered the rhizosphere communities of rice nursery seedlings and (iii) improved crop growth and yield in the rice-wheat cropping system. Rice seedlings were grown in nursery plots that were solarized for 28 days or left untreated and were transplanted to field plots that were also either solarized for 28 days or not in a randomized complete block design with four replications. Rice was grown to maturity and harvested, followed by a complete wheat cropping cycle. Solarization of main field plots increased counts of fungal propagules and decreased root galling and nematode counts and decreased weed biomass. Terminal restriction fragment length polymorphism (T-RFLP) analyses of extracted soil DNA revealed significant shifts in fungal community composition following soil solarization, which was sustained throughout the entire rice cropping cycle at both field sites. The bacterial community composition was similarly affected, but at only one of the two sites. Despite the observed changes in soil microbial community composition over more than one cropping period, solarization had no impact on crop productivity at either site. Nevertheless, such changes in soil microbial communities in response to solarization may be responsible for increased yields observed at other sites with greater pathogen pressure. This practice has shown promising results in many farmers’ fields in South Asia, but further elucidation of the mechanisms by which solarization increases productivity is needed.     

Microbial community structure in forest soils treated with a fire retardant

The influence of a fire retardant (Firesorb, an acrylic–acrylamide copolymer) on the microbial community structure determined by phospholipid fatty acid (PLFA) analysis was examined under laboratory conditions using two different textured soils under pine forest. Firesorb was added to unheated and heated soil samples (350°C for 10 min followed by reinoculation, to mimic a forest fire) at three levels of application (none, usual and three times the usual levels), and measurements were made after 12 weeks of incubation. The relative importance of the three factors considered on the PLFA profiles was as follows: soil heating ≫ soil texture ≈ Firesorb treatment. In the unheated soils, Firesorb had a larger effect than soil texture, while the opposite was found in the heated soils. Soil heating reduced the total PLFAs, while Firesorb tended to increase them in both the unheated and heated soils. Soil heating decreased the PLFAs indicative of gram-positive (G⁺) bacteria and tended to increase the fatty acids associated with gram-negative (G⁻) bacteria and, to a lesser extent, the PLFA 18:2ω6, considered to be predominantly of fungal origin. Firesorb treatment decreased the G⁻/G⁺ bacteria ratio in the heated soils but tended to increase it in the unheated soils, the effect being dose dependent.     

Contrasting development of soil microbial community structure under no-tilled perennial and tilled cropping during early pedogenesis of a Mollisol

A range of agricultural practices influence soil microbial communities, such as tillage and organic C inputs, however such effects are largely unknown at the initial stage of soil formation. Using an eight-year field experiment established on exposed parent material (PM) of a Mollisol, our objectives were to: (1) to determine the effects of field management and soil depth on soil microbial community structure; (2) to elucidate shifts in microbial community structure in relation to PM, compared to an arable Mollisol (MO) without organic amendment; and (3) to identify the controlling factors of such changes in microbial community structure. The treatments included two no-tilled soils supporting perennial crops, and four tilled soils under the same cropping system, with or without chemical fertilization and crop residue amendment. Principal component (PC) analysis of phospholipid fatty acid (PLFA) profiles demonstrated that microbial community structures were affected by tillage and/or organic and inorganic inputs via PC1 and by land use and/or soil depth via PC2. All the field treatments were separated by PM into two groups via PC1, the tilled and the no-tilled soils, with the tilled soils more developed towards MO. The tilled soils were separated with respect to MO via PC1 associated with the differences in mineral fertilization and the quality of organic amendments, with the soils without organic amendment being more similar to MO. The separations via PC1 were principally driven by bacteria and associated with soil pH and soil C, N and P. The separations via PC2 were driven by fungi, actinomycetes and Gram (−) bacteria, and associated with soil bulk density. The separations via both PC1 and PC2 were associated with soil aggregate stability and exchangeable K, indicating the effects of weathering and soil aggregation. The results suggest that in spite of the importance of mineral fertilization and organic amendments, tillage and land-use type play a significant role in determining the nature of the development of associated soil microbial community structures at the initial stages of soil formation.     

人为干扰活动对沂蒙山区麻栎林群落结构和水文性能的影响

为了探讨人为干扰对林分结构和水文性能的影响,采用样地调查和试验观测方法,研究沂蒙山区麻栎林在封禁保育、放牧樵采和禁牧禁伐干扰下灌草植被多样性和水文性能.结果表明：1）放牧樵采干扰导致麻栎林群落灌草多样性和水文性能明显下降.与封禁保育群落相比,灌草植被盖度、多样性和均匀度指数降低了83.0％、88.7％和85.1％;土壤总孔隙度、稳渗速率和林地枯落物持水量减小了44.2％、76.7％和43.7％.2）实施禁牧禁伐保护能明显改善麻栎林群落的植物多样性和水文性能,与放牧樵采干扰群落相比,灌草植被盖度、多样性和均匀度指数提高了520％、613％和532％,土壤总孔隙度、稳渗速率和枯落物持水量高了30.3％、103.7％和28.0％.3）麻栎林群落的灌草植被盖度,与植物多样性测度及水文性能指标之间存在明显的正相关关系,其大小可作为综合表征群落多样性和水文功能退化或恢复程度的指标.     

Tree species effects on soil enzyme activities through effects on soil physicochemical and microbial properties in a tropical montane forest on Mt. Kinabalu, Borneo

Tree species influence on the soil mineralization process can regulate overall nutrient cycling in a forest ecosystem, which may occur through their effects on substrate quality, soil physicochemical properties and soil microbial community. We investigated tree species effects on soil enzyme activities in a tropical montane forest on Mt. Kinabalu, Borneo. Specifically, we analyzed C- and P-degrading enzyme activities, as well as the relationships among the enzyme activities, soil physicochemical properties, substrate quality (C, N, and P concentrations), and microbial composition in the top 5 cm soils beneath conifers (Dacrycarpus imbricatus and Dacrydium gracilis) and broadleaves (Lithocarpus clementianus, Palaquium rioence, and Tristaniopsis clementis). Activities of acid phosphatase and β-d-glucosidase were significantly different among the tree species. Soil moisture, total C and N content and microbial lipid abundance (a proxy for microbial composition) could influence the enzyme activities although the relative contributions of microbial composition to the enzyme activities might be smaller. A higher acid phosphatase activity beneath Dacrydium than those beneath the other tree species can compensate for a lower concentration of P in available fractions beneath Dacrydium. This localized mineralization activity could subsequently influence soil nutrient availability in this forest.     

Microbial activity and community structure in two drained fen soils in the Ljubljana Marsh

Fen peatlands are specific wetland ecosystems containing high soil organic carbon (SOC). There is a general lack of knowledge about the microbial communities that abound in these systems. We examined the microbial activity and community structure in two fen soils differing in SOC content sampled from the Ljubljana Marsh under different seasonal conditions. Substrate-induced respiration and dehydrogenase activity were used as indicators of total microbial activity. Both methods indicated higher microbial activities in the fen soil with the higher SOC content on all dates of sampling. To determine whether the differences in microbial activity were associated with differences in the microbial community structures, terminal restriction fragment length polymorphism (T-RFLP) of bacterial 16S rRNA genes was performed. Comparison of the T-RFLP profiles revealed very similar community structures in both fens and in the two seasonal extremes investigated. This suggested a stable community structure in the two fens, which is not affected by the SOC content or seasonal variation. In addition, a bacterial 16S ribosomal RNA gene based clone library was prepared from the fen soil with the higher SOC content. Out of 114 clones analysed, approximately 53% belonged to the Proteobacteria, 23% to the Acidobacteria, 21% to a variety of other taxa, and less than 3% were affiliated with the Firmicutes.     

The relationship between the organic matter composition of a forest floor and the structure of a soil arthropod community

The relationship between the amount and conposition of organic matter of a forest floor and the structure of the soil arthropod community was investigated in a temperate mixed forest of beech and pine trees. Seven enivronmental variables, i.e. broad leaves, pine needles, twigs, roots, others, total organic matter (sum of broad leaves, pine needles, twigs and others) and water content, were related to the soil arthropods in the statistical analysis. Pearson correlation was used to analyze the relation between environmental variables and total abundance of Collembola, Oribatida and Mesostigmata. Total abundance of Collembola and Oribatida did not show a clear correlation with total organic matter. Total abundance of Mesostigmata showed the positive correlation with broad leaves or total organic matter. The result in this study might be due to the fact that ‘organic matter’ treated in this study was the material which was left on the 2 mm mesh sieve, and most of small fragmental organic matter in the F or H layer was not included. Canonical correspondence analysis (CCA) was used to relate the variables of the organic matter to the community organizations of Collembola and Oribatida. CCA ordination indicated that the total amount of organic matter was the most important variable for the organization of both communities. These results suggest that the amount and composition of organic matter influenced the community organization of soil arthropods in a mixed forest.     

盐碱胁迫对黄瓜嫁接苗根际土壤细菌和真菌群落结构及丰度的影响

为了解盐碱胁迫对黄瓜嫁接苗根际土壤细菌和真菌群落结构的影响,本研究以2种耐盐碱砧木‘华砧108’(T1)、‘神力铁木砧’(T2)和2种盐碱敏感砧木‘辉太郎’(S1)、‘京欣砧6号’(S2)为试材,自根苗作为对照,以混合盐(盐分摩尔比为NaHCO_3∶Na_2SO_4∶NaCl∶Na_2CO_3=4∶2∶2∶0.15)浓度为100 mmol·L~(-1)、pH 9.0的处理液处理20 d、30 d、40 d(定植30 d、40 d、50 d),利用PCR-DGGE技术,研究了盐碱胁迫对不同砧木嫁接的黄瓜幼苗根际土壤微生物群落结构和丰度的影响。结果表明,耐盐碱的砧木品种T1、T2根际土壤真菌DGGE图谱条带数显著高于盐碱敏感的S2和自根苗对照CK,并且耐盐碱的品种T2土壤细菌的Shannon-Wiener指数与均匀度指数均显著高于盐碱敏感的品种S1、S2和自根苗对照CK。耐盐碱品种T1的细菌16S rDNA基因拷贝数在定植50 d时显著高于盐碱敏感的品种及自根苗;在定植40 d时,耐盐碱的砧木T2真菌ITS基因拷贝数显著高于盐碱敏感的品种以及黄瓜自根苗;定植50 d时,耐盐碱的砧木真菌ITS基因拷贝数显著高于盐碱敏感的品种,但与自根苗差异不显著。不同耐盐碱性砧木嫁接黄瓜幼苗根际土壤微生物群落结构组成和丰度存在差异。以上研究表明,随着盐碱胁迫时间的增加,耐盐碱性不同的砧木嫁接苗根际土壤微生物群落丰度与结构多样性产生了较大差异,间接改变了土壤微生态环境,致使土壤微生物数量和丰富度也发生改变。耐盐碱的砧木品种可能通过改善土壤微环境来加强其自身的耐盐碱特性。     

Snow removal alters soil microbial biomass and enzyme activity in a Tibetan alpine forest

Projected future decreases in snow cover associated with global warming in alpine ecosystems could affect soil biochemical cycling. To address the objectives how an altered snow removal could affect soil microbial biomass and enzyme activity related to soil carbon and nitrogen cycling and pools, plastic film coverage and returning of melt snow water were applied to simulate the absence of snow cover in a Tibetan alpine forest of western China. Soil temperature and moisture, nutrient availability, microbial biomass and enzyme activity were measured at different periods (before snow cover, early snow cover, deep snow cover, snow cover melting and early growing season) over the entire 2009/2010 winter. Snow removal increased the daily variation of soil temperature, frequency of freeze–thaw cycle, soil frost depth, and advanced the dates of soil freezing and melting, and the peak release of inorganic N. Snow removal significantly decreased soil gravimetric water, ammonium and inorganic N, and activity of soil invertase and urease, but increased soil nitrate, dissolve organic C (DOC) and N (DON), and soil microbial biomass C (MBC) and N (MBN). Our results suggest that a decreased snow cover associated with global warming may advance the timing of soil freezing and thawing as well as the peak of releases of nutrients, leading to an enhanced nutrient leaching before plant become active. These results demonstrate that an absence of snow cover under global warming scenarios will alter soil microbial activities and hence element biogeochemical cycling in alpine forest ecosystems.     

Microbial community structure varies in different soil zones of a potato field

Analyses of phosholipid fatty acids (PLFA) and phospholipid etherlipids (PLEL) revealed differences in size and structure of microbial communities in the three soil zones of a potato field: ridge (RS), uncompacted interrow (IS), and tractor‐compacted interrow soil (CS). The quantity of phosholipid biomarker concentrations (= microbial biomass) showed large differences among different zones, when lipid contents were related to fresh soil volume instead of soil dry matter. Compaction of interrow soil caused an increase in bacterial and eukaryotic biomass, expressed as total PLFA concentration, as well as an increase in total archaeal biomass, expressed as total PLEL concentration and caused a decrease in the fungi‐to‐bacteria ratio. Due to the higher waterfilled pore space (an indirect measure for reduced O₂ availability) in CS, a more pronounced anaerobic microbial community was estimated than in IS, which serves as an explanation for the elevated N₂O fluxes in this soil zone. Apart from the effect of O₂ availability, microbial communities, especially populations of aerobic bacteria, ascinomycetes, fungi, algae, protozoa, and aerobic archaea responded to organic matter composition in the individual zones. Only in RS PLEL derived cyclic isoprenoids were found, which presumably indicate root‐colonizing archaea. Following principal component analyses of specific biomarker profiles, the assumed substrate effect had the strongest influence on the differences in microbial community structure between the three soil zones.     

PLFA方法研究连作对加工番茄根际土壤微生物群落结构的影响

通过在石河子大学农学院试验站开展加工番茄连作定点微区试验,采用氯仿熏蒸和磷脂脂肪酸(PLFA)法相结合,研究了不同连作处理(种植1 a、连作3 a、5 a和7 a)对新疆加工番茄花果期和成熟期根际土壤微生物群落结构及土壤微生物量的影响。结果表明,连作导致土壤微生物量碳(SMBC)、微生物量氮(SMBN)和微生物熵(q MB)下降,SMBC/SMBN升高,而微生物量磷(SMBP)随连作年限和生育期的变化而不同。连作显著增加了真菌PLFAs含量,降低了细菌PLFAs含量、土壤PLFAs总量及细菌/真菌PLFAs的比值,而放线菌PLFAs含量变化无规律。连作7 a时,成熟期的细菌PLFAs含量、土壤PLFAs总量较对照分别减少62.9%、50.3%(P0.05),而真菌PLFAs含量较对照升高60.2%(P0.05)。从多样性指数分析看,Shannon-Wiener指数、Simpson指数、Brillouin指数和Pielou指数均随连作年限的延长呈先升后降的变化,其中连作3 a时各项指数最大,连作7 a时最小,表明在本试验年限范围内,连作使得微生物群落多样性与均匀程度皆出现了一定程度的降低。相关性分析表明,土壤微生物各类群PLFAs量、微生物量及土壤肥力之间存在相关性,说明土壤微生物量与土壤肥沃程度相关,可作为评价土壤肥力的生物学指标。可见,加工番茄连作改变了土壤微生物群落结构,降低了土壤微生物量,最终在根际土壤微生态系统和环境因子等因素的综合作用下产生连作障碍。