Fatty acid composition and change in Collembola fed differing diets: identification of trophic biomarkers

To assess the potential of fatty acid (FA) compositions to act as biomarkers in the soil food web, two species of Collembola, Folsomia candida and Proisotoma minuta, were switched to four possible diets: Cladosporium cladosporioides (a common soil fungus), Panagrellus redivivus (a bacteria feeding nematode), Zea mays (maize) and Alnus glutinosa (alder). The change in FA content of the Collembola was observed over the following 39 days. The four diets produced significant shifts in the FA compositions of the Collembola, with P. redivivus causing the most extreme changes; Collembola fed P. redivivus gained complex FA compositions similar to those of the nematode diet. Changes in the relative abundances of some FAs were found to follow negative exponential curves, as the components either accumulated in, or were removed from, the FA pool in the Collembola; abundance half-lives varied between 0.5 and 22.4 days, indicating that Collembolan FA compositions changed readily with the input of new exogenous components. The results demonstrate that Collembolan FA compositions are influenced by diet, and that the abundances of FAs such as i15:0, i17:0 and 18:1(n-7) may be used as biomarkers of nematode consumption by Collembola. In contrast, the C₂₀ polyunsaturated FAs cannot be used as biomarkers for nematode predation as Collembola possess the ability to biosynthesise high abundances of these compounds when not provided by the diet.     

Uptake of Sr from microcline and biotite by ectomycorrhizal fungi in a Norway spruce forest

Ectomycorrhizal (EM) fungi growing in symbiosis with tree seedlings have been found in laboratory experiments to stimulate weathering and the uptake of nutrients from silicate minerals. In the present study, we used the natural abundance of strontium isotopes to confirm that these fungi obtain strontium from biotite and microcline under field conditions. Minerals enriched in radiogenic ⁸⁷Sr were introduced into fungal in-growth mesh bags and placed under a 5-10 cm thick humus layer developed on boulders in a Norway spruce (Picea abies (L.) Karst) forest in south-western Sweden. EM root tips were sampled above the mesh bags and the ⁸⁷Sr/⁸⁶Sr ratio was used to calculate the fraction of Sr in the root tips that originated from the minerals. In the EM root tips sampled above the mesh bags containing the different minerals, 1.5% of the Sr originated from biotite and 6.4% from microcline. The amount of Sr was more than 300 times higher in the mesh bags containing microcline than in those containing biotite, indicating that proportionally more Sr was released from the biotite. This study demonstrates that EM fungi have the potential to take up measurable amounts of nutrients, such as Ca and K, from microcline and biotite in the field.     

Suppression of other soil microorganisms by mycelium of arbuscular mycorrhizal fungi in root-free soil

The influence of mycelium of two arbuscular mycorrhizal (AM) fungi, Glomus intraradices and Glomus mosseae, on other soil microorganisms, was examined in root-free soil with and without organic substrate amendment in terms of cellulose. The AM fungi were grown in symbiosis with cucumber in a compartmented growth system, which allowed AM fungal external mycelium to grow into root-free compartments. The fungicide Benomyl was applied to the root-free compartments to create an alternative non-mycorrhizal control treatment. Whole cell biomarker fatty acids were employed to quantify different groups of soil microorganisms including the two AM fungi. Abundance of most microbial groups were reduced by external mycelium of both AM fungi, though differential effects on the microbial community composition were observed between the two AM fungi as revealed from principal component analysis. Inhibition of other soil microorganisms was more pronounced in root-free soil with mycelium of G. mosseae than with mycelium of G. intraradices. In general, cellulose increased the amount of biomarker fatty acids of most groups of soil microorganisms, but cellulose did not affect the influence of AM fungi on other soil microorganisms. Benomyl suppressed growth of the external mycelium of the two AM fungi and had limited non-target effects on other microbial groups. In conclusion, our results show differential effects of external mycelium of AM fungi on other soil microbial communities, though both AM fungi included in the study overall inhibited most microbial groups as examined using whole cell biomarker fatty acids.     

Tannic acid and Norway spruce condensed tannins can precipitate various organic nitrogen compounds

There is increasing evidence that tannins affect degradation of soil organic matter and nitrogen cycling. It is assumed that the influence of tannins on biochemical processes is partly related to their ability to precipitate proteins. However, there is almost no information about precipitation of organic nitrogen-containing compounds other than proteins. A few studies indicate that tannins can precipitate arginine, choline or chitosan. In this study we used commercial tannic acid and condensed tannins extracted from Norway spruce (Picea abies (L.) Karst) needles to investigate precipitation of a wide range of organic nitrogen compounds including amino acids (all 20 proteinaceous), peptides (insulin, oxidized glutathion, reduced glutathion, AlaAla, GlyGlu, GlyPhe, GlyGlyGly), proteins (bovine serum albumin, Rubisco i.e. d-ribulose 1,5-diphosphate carboxylase), nitrogen bases, polyamines and aminosugars (N-acetyl-d-glucosamine, chitin and chitosan). Our results showed that tannins can precipitate a subset of these compounds - of the amino acids only arginine, of the peptides studied only insulin, all the proteins, polyamines, nitrogen bases, chitin and chitosan, but not N-acetyl-d-glucosamine. Concentrations of organic nitrogen compound and tannins affected amount of these compounds in precipitates. Moreover, pH value affected precipitation. The amount of precipitated organic nitrogen compound and the amount of precipitated tannins showed positive correlation across different pH. Precipitation of organic N-containing compounds other than protein by tannins can potentially affect reactions in all biochemical mixtures including tannins and these organic nitrogen compounds, and affect soil N cycling.     

Interactions between the external mycelium of the mycorrhizal fungus Glomus intraradices and other soil microorganisms as affected by organic matter

The influence of organic matter on the interactions between external mycelium of the arbuscular mycorrhizal (AM) fungus Glomus intraradices, the bacterium Burkholderia cepacia and other soil microorganisms was studied in a root-free sand environment. Organic matter amendment, in terms of ground barley leaves, markedly increased the growth of the external mycelium of G. intraradices as estimated both with the fatty acid biomarker 16:1ω5 and hyphal length measurements. Mycelial proliferation of G. intraradices in sand with organic matter was unaffected by both inoculation with B. cepacia and a soil filtrate containing a mixed population of indigenous microorganisms. On the other hand, in the absence of organic matter, both inoculation with B. cepacia and the soil filtrate reduced the growth of G. intraradices, as estimated with measurements of 16:1ω5. In contrast, B. cepacia inoculation increased hyphal length density of G. intraradices in the absence of organic matter. Overall, the presence of external mycelium of G. intraradices increased the bacterial biomass and counteracted a suppressive effect of B. cepacia on the growth of saprotrophic fungi.     

狭鳕鱼皮脂肪酸组成分析及其营养评价

为研究狭鳕鱼皮脂肪酸的营养价值,对狭鳕鱼皮的一般营养成分和脂质组成进行分析,同时采用气相色谱-质谱法对其脂肪酸组成进行分析和营养评价。结果表明,狭鳕鱼皮总脂含量为干重的6.09%,且总脂以甘油三酯(53.85%)和磷脂(25.54%)为主;脂肪酸组成丰富,以C16∶0、C18∶1n-9、C20∶1n-11、C20∶5n-3(EPA)和C22∶6n-3(DHA)为主,且C20∶5n-3和C22∶6n-3占总脂肪酸含量的27.64%;饱和脂肪酸、单不饱和脂肪酸和多不饱和脂肪酸三者之比为0.85∶1.00∶0.92,且脂肪酸致动脉粥样硬化指数和血栓形成指数分别为0.50和0.23,表明狭鳕鱼皮具有促进神经系统发育以及降血脂、抗动脉粥样硬化和抗血栓形成等功效。本研究为狭鳕鱼皮的营养评价及其产品的高值化综合利用提供理论依据。     

Variability for the fatty acid composition of the seed oil in a germplasm collection of the genus Brassica

A germplasm collection consisting of 1475 entries from 21 species of Brassica, including 36 lower taxa, was evaluated for the fatty acid composition of the seed oil. A total of 358 entries representing the taxonomic variability in the collection were selected and analysed by gas-liquid chromatography (GLC). The remaining 1117 entries were analysed by near-infrared reflectance spectroscopy (NIRS), after developing multi-species calibration equations. The results demonstrated that NIRS is an effective technique to assess variability for oleic, linoleic, linolenic and erucic acid in intact-seed samples of multiple Brassica species, provided that calibration equations be developed from sets containing large taxonomic and chemical variability. Some fatty acid ratios were used to estimate the efficiency of the different biosynthetic pathways. Two well-defined patterns were observed. The first one was characterised by high elongation efficiency and accumulation of high levels of erucic acid. The highest erucic acid content (>55% of the total fatty acids) was found in the cultivated species B. napus L., B. oleracea L., and B. rapa L., and in the wild species B. incana Tenore, B. rupestris Raf., and B. villosa Bivona-Bernardi, the three latter belonging to the B. oleracea group (n=9). The second pattern was characterised by high desaturation efficiency, resulting in the accumulation of high levels of the polyunsaturated linoleic and linolenic acid (up to more than 55%). The highest levels of these fatty acids were found in samples of B. elongata Ehrh., especially of the var. integrifolia Boiss. The utility of the reported variability for plant breeding is discussed.     

Organic acid concentrations in soil solution: effects of young coniferous trees and ectomycorrhizal fungi

Organic acids may play a key role in rhizosphere and pedogenic processes. The effects of young trees and ectomycorrhizas on the soil solution concentrations of low molecular weight organic acids (LMWOAs) were studied in soil columns (E horizon) in the presence or absence of Pinus sylvestris and Picea abies with or without three ectomycorrhizal fungi. Several LMWOAs were identified at concentrations ranging from <0.1 to 11 μM. Compared to soil columns without tree seedlings, the presence of non-mycorrhizal or mycorrhizal tree seedlings sometimes resulted in small but statistically significant increases in citrate, formate, malonate and oxalate concentration. The general nutrient concentration and low P had little short-term effect on soil solution organic acid concentrations. The results suggest that biodegradation rather than production may be the major factor regulating soil solution organic acid concentrations.     

Fermentation of sugar beet waste by Aspergillus niger facilitates growth and P uptake of external mycelium of mixed populations of arbuscular mycorrhizal fungi

Sugar beet waste has potential value as a soil amendment and this work studied whether fermentation of the waste by Aspergillus niger would influence the growth and P uptake of arbuscular mycorrhizal (AM) fungi. Plants were grown in compartmentalised growth units, each with a root compartment (RC) and two lateral root-free compartments (RFC). One RFC contained untreated soil while the other RFC contained soil, which was uniformly mixed with sugar beet waste, either untreated (SB) or degraded by A. niger (ASB) in a rock phosphate (RP)-supplied medium. The soil in each pair of RFC was labelled with ³³P and ³²P in order to measure P uptake by the AM fungal mycelium, of which length density was also measured. Whole cell fatty acid (WCFA) signatures were used as biomarkers of the AM fungal mycelium and other soil microorganisms. The amount of biomarkers of saprotrophic fungi and both Gram-positive and Gram-negative bacteria was higher in SB than in ASB treatments. Whilst ASB increased growth and activity of AM mycelium, SB had the opposite effect. Moreover, shoot P content was increased by the addition of ASB, and by inoculation with AM fungi. Modification of soil microbial structure and production of exudates by A. niger, as a consequence of fermentation process of sugar beet waste, could possibly explain the increase of AM growth in ASB treatments. On the other hand, the highest P uptake was a result of the solubilisation of rock phosphate by A. niger during the fermentation.     

Properties of dissolved organic matter derived from silver birch and Norway spruce stands: Degradability combined with chemical characteristics

Dissolved organic matter (DOM) derived from the humus layer under silver birch (Betula pendula Roth), Norway spruce (Picea abies (L.) Karst.), and mixed stands, and from senescent birch leaves and from spruce needles of the four oldest year-growth were characterized microbiologically and chemically. Samples were collected in the autumn and the solutions were obtained by centrifugation-drainage technique. The degradability of DOM, the availability of DOM to bacteria and fungi, concentrations of phenolic compounds and carbohydrates, and the distribution of carbon and nitrogen into fractions according to the chemical nature and the molecular size were studied. DOM derived from leaves and needles was clearly more labile than DOM derived from the humus layer indicating the importance of studying the DOM originating from fresh litter when assessing the turnover of DOM.DOM derived from spruce needles appeared to differ chemically greatly from all other samples. It had very high concentrations of carbohydrates, probably due to the sampling time, and phenolic compounds. The chemical composition of DOM derived from humus layer did not reflect the composition of DOM derived from needles and leaves. DOM derived from birch leaves degraded more than DOM derived from spruce needles and DOM derived from humus layer collected at the birch sites degraded more than DOM derived from humus layer collected at the spruce sites. The degradability of different compound groups of DOC and DON was studied in a short-term incubation (20 d) of DOM solutions by characterizing the solutions initially and after the incubation. Almost all compound groups appeared to degrade but weak hydrophobic acids, bases, hydrophilic neutrals, the smallest molecular size compounds, carbohydrates, and phenolic compounds degraded the most.     

Interactions between the arbuscular mycorrhizal fungus Glomus intraradices and the plant growth promoting rhizobacteria Paenibacillus polymyxa and P. macerans in the mycorrhizosphere of Cucumis sativus

Interactions between the arbuscular mycorrhizal (AM) fungus Glomus intraradices and bacteria from the genus Paenibacillus (P. macerans and P. polymyxa) were examined in a greenhouse pot experiment with Cucumis sativus with and without organic matter amendment (wheat bran). P. polymyxa markedly suppressed AM fungus root colonization irrespective of wheat bran amendment, whereas P. macerans only suppressed AM fungus root colonization in combination with wheat bran amendment. Dual inoculation with P. macerans and G. intraradices in combination with wheat bran amendment also caused severe plant growth suppression. Inoculation with G. intraradices was associated with increased levels of dehydrogenase activity and available P in the growth substrate suggesting that mycorrhiza formation accelerated the decomposition of organic matter resulting in mobilization of phosphorus. Inoculation with both Paenibacillus species increased all measured microbial fatty acid biomarkers in the cucumber rhizosphere, except for the AM fungus biomarker 16:1ω5, which was reduced, though not significantly. Similarly, inoculation with G. intraradices increased all measured microbial fatty acid biomarkers in the cucumber rhizosphere, except for the Gram-positive bacteria biomarker 15:0 anteiso, which was overall decreased by G. intraradices inoculation. In combination with wheat bran amendment G. intraradices inoculation caused a 39% reduction in the amount of 15:0 anteiso in the treatment with P. polymyxa, suggesting that G. intraradices suppressed P. polymyxa in this treatment. In conclusion, plant growth promoting species of Paenibacillus may have suppressive effects of AM fungi and plant growth, especially in combination with organic matter amendment. The use of an inert plant growth media in the present study allowed us to study rhizosphere microbial interactions in a relative simple substrate with limited interference from other soil biota. However, the results obtained in the present work mainly show potential interactions and should not be directly extrapolated to a soil situation.     

Zinc effects on a soil bacterial flora characterized by fatty acid composition of the isolates

Summary Effects of zinc (zinc chloride) added to a sandy clay loam soil on its bacterial flora were investigated by the study of cellular fatty acid composition of the isolates. The soil amended with glucose (carbon source) and ammonium sulfate (nitrogen source) was incubated in the presence (1.0 mg/g) or absence of zinc for 96 h. Bacterial strains were isolated on albumin agar from the incubated soils every 24 h. Their cellular fatty acid composition was analyzed and the strains were classified according to the percentage distribution pattern of the fatty acid composition.Two and four dominant patterns of the fatty acid composition were obtained in the isolates from the control soil and the soil with zinc added, respectively. They were different from one another. Most of the dominant strains isolated from the soil with added zinc were zinc-tolerant, and it was suggested that the selection for zinc tolerance readily proceeded.     

Growth and interactions of arbuscular mycorrhizal fungi in soils from limestone and acid rock habitats

Arbuscular mycorrhizal (AM) development in different soil types, and the influence of AM fungal hyphae on their original soil were investigated. Plantago lanceolata, which can grow in soils of a very wide pH range, was grown in two closely related limestone soils and an acid soil from rock habitats. Plants were colonised by the indigenous AM fungal community. The use of compartmented systems allowed us to compare soil with and without mycorrhizal hyphae. Root colonisation of P. lanceolata was markedly higher in the limestone soils (30-60%) than in the acid soil (5-20%), both in the original habitat and in the experimental study. Growth of extraradical AM fungal hyphae was detected in the limestone soils, but not in the acid soil, using the signature fatty acid 16:1ω5 as biomass indicator. Analysis of signature fatty acids demonstrated an increased microbial biomass in the presence of AM fungal hyphae as judged for example from an increased amount of NLFA 16:0 with 30 nmol g⁻¹ in one of the limestone soils. Bacterial activity, but not soil phosphatase activity, was increased by around 25% in the presence of mycorrhizal hyphae in the first harvest of limestone soils. AM fungal hyphae can thus stimulate microorganisms. However, no effect of AM hyphae was observed on the soil pH or organic matter content in the limestone soils and the available P was not depleted.     

Soil inoculation with the biocontrol agent Clonostachys rosea and the mycorrhizal fungus Glomus intraradices results in mutual inhibition, plant growth promotion and alteration of soil microbial communities

Interactions between the biocontrol fungus Clonostachys rosea IK 726 and a tomato/Glomus intraradices BEG87 symbiosis were examined with and without wheat bran, which served as a food base for C. rosea. In soil without wheat bran amendment, inoculation with C. rosea increased plant growth and altered shoot nutrient content resulting in an increase and decrease in P and N content, respectively. Inoculation with G. intraradices had no effect on plant growth, but increased the shoot P content. Dual inoculation with G. intraradices and C. rosea followed the pattern of C. rosea in terms of plant growth and nutrient content. Wheat bran amendment resulted in marked plant growth depressions, which were counteracted by both inoculants and dual inoculation increased plant growth synergistically. Amendment with wheat bran increased the population density of C. rosea and reduced mycorrhizal fungus colonisation of roots. The inoculants were mutually inhibitory, which was shown by a reduction in root colonisation with G. intraradices in treatments with C. rosea and a reduction in colony-forming units (cfu) of C. rosea in treatments with G. intraradices, irrespective of wheat bran amendment. Moreover, both inoculants markedly influenced soil microbial communities examined with biomarker fatty acids. Inoculation with G. intraradices increased most groups of microorganisms irrespective of wheat bran amendment, whereas the influence of C. rosea on other soil microorganisms was affected by wheat bran amendment. Overall, inoculation with C. rosea increased and decreased most groups of microorganisms without and with wheat bran amendment, respectively. In conclusion, despite mutual inhibition between the two inoculants this interaction did not impair their observed plant growth promotion. Both inoculants also markedly influenced other soil microorganisms, which should be further studied in relation to their plant growth-promoting features.     

Changes in fatty acid composition with age and environment in different types of peat profiles in Japan

Fatty acid composition of the crude lipid fraction of peat was investigated using several typical peat profiles in Japan. Fatty acid composition varied with the peat layers accumulated in a peat profile since 32,000 years BP. Deposition of long-range transported volcanic ash tephras also affected the composition remarkably due to the acceleration of decomposition. Fatty acid composition differed among high moor, transitional moor, and low moor peat profiles sampled in several locations in Hokkaido, Japan. The difference in the plants involved in the formation of peat was considered to be a very important factor determining the fatty acid composition. For example, arachidic acid was considered to be a good indicator for the presence of reed, while the percentage of stearic acid tended to be high in the high moor peat profiles dominated by sphagnum. As the fatty acids with a longer chain length were more stable than those with a shorter chain length, the percentage of longer fatty acids (C24 and C26) tended to increase and that of shorter fatty acids (CI4 and CI6) to decrease in the lower peat profiles. The drying of peatland also exerted a similar effect on the fatty acid composition.     

Growth and chlorophyll,mineral, and total amino acid composition of tomato and wheat plants in relation to nitrogen and iron nutrition II. Chlorophyll content and total amino acid composition

Studies of the amino acids distribution in plants subjected to nutrient regimes are limited. The present study investigated the effect of NO₃‐N and FeSO₄‐Fe regimes on chlorophyll and total amino acids composition of tomato and wheat plants. Also the distribution of 17 amino acids between the different plant parts was studied. Increasing the NO₃‐N level up to 200 mg kg^‐1 greatly increased the total amino acids content of tomato plants. The total amino acids content of wheat plants continued to increase with addition of NO₃‐N up to 400 mg kg^‐1. The response of chlorophyll content to NO₃‐N supply was highly dependent on Fe level both in tomato and wheat plants. The interaction between NO₃‐N and FeSO₄‐Fe had a great effect on the total amino acids content and distribution. Iron increased the translocation of proline from roots to leaves. The overall amino acids contents of leaves was higher than that of stems or roots.     

Organic and inorganic soil phosphates and acid phosphatase activity in the rhizosphere of 80-year-old Norway spruce [Picea abies (L.) Karst.] trees

Summary Inorganic and organic phosphates (P) were measured in bulk soil, rhizosphere soil and mycorrhizal rhizoplane soil of Norway spruce. Various methods of P extraction and estimation were compared. In addition, acid phosphatase activity and mycelial hyphae length were determined. In soil solutions from various locations, about 50% (range 35%–65%) of the total P was present as organic P. Compared to the bulk soil, the concentrations of readily hydrolysable organic P were lower in the rhizosphere soil and in the rhizoplane soil; this difference was particularly marked in the humus layer. In contrast, the concentrations of inorganic P either remained unaffected or increased. A 2- to 2.5-fold increase was found in the activity of acid phosphatase in the rhizoplane soil in comparison to the bulk soil. There was a positive correlation (r = 0.83^***) between phosphatase activity and the length of mycelial hyphae. The results stress the role of organic P and of acid phosphatase in the rhizosphere in the P uptake by mycorrhizal roots of spruce trees grown on acid soils.     

Development, fatty acid composition, and storage of drupes and seeds from the endangered pondberry (Lindera melissifolia)

Pondberry (Lindera melissifolia [Walt.] Blume: Lauraceae) is an endangered, dioecious, clonal shrub that grows in bottomland hardwood forests in the southeastern United States. Prior work has emphasized vegetative reproduction associated with the clonal nature of this species. Little has been published about the early morphological and biochemical characteristics of the fruit as they mature. Fruits, drupes originating from the axillary buds, were collected every 30 days after anthesis and examined for seed structure development and fatty acid composition of the fruit and seed. Sixty days after anthesis, fruits had not formed an organized embryo/cotyledon, weighed 0.1 ± 0.001 g, and measured 7.1 ± 0.04 mm × 4.3 ± 0.03 mm. Ninety days after anthesis, a complete seed had formed within the drupe. Of the total drupe weight (average 0.23 ± 0.01 g), the seed comprised 33% of the mass gained from 60 days after anthesis. Overall composition of the seed and pulp lipids changed significantly over the course of development. Myristic, palmitic, steric, oleic, linoleic, and linolenic fatty acids were revealed by the lipid analyses. Lauric acid was not found in any of the early seed lipid samples but it increased in quantity as seed matured to become the dominant fatty acid in this tissue. Conversely, pulp contained only small amounts of lauric acid; its fatty acid profile was dominated by oleic acid. Fully hydrated seeds stored well for 16 months at both 4 °C and −2 °C. Although drying had a deleterious effect on germination when dried seeds were conventionally stored at 4 °C, seeds that had been dried for 24 h to a moisture content of 8.6% were successfully stored in liquid nitrogen.     

Phospholipid fatty acid composition of a 2,4,6-trinitrotolune contaminated soil and an uncontaminated soil as affected by a humification remediation process

Analysis of phospholipid fatty acids (PLFAs) was performed to investigate effects of 2,4,6-trinitrotoluene (TNT) contamination and soil remediation on microbial biomass and community structure. A TNT-contaminated and an uncontaminated soil from a former ammunition plant were analysed before and after a humification/remediation process. TNT contamination reduced microbial biomass but indicated only minor differences in PLFA composition between the contaminated and uncontaminated soils. The humification process increased microbial biomass and altered soil PLFA patterns to a larger degree than did TNT contamination.