Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition

The relative importance of specific plant properties versus soil characteristics in shaping the bacterial community structure of the rhizosphere is a topic of considerable debate. Here, we report the results of a study on the bacterial composition of the rhizosphere of the wild plant Carex arenaria (sand sedge) growing at 10 natural sites in The Netherlands. The soil properties of the sandy soils at these sites were highly disparate, most notably in pH, chloride and organic matter content. Rhizosphere and bulk soil bacterial communities were examined by culture-independent means, namely, 16S rDNA-directed PCR-DGGE profiling. Large differences were observed between the bacterial communities of the different sites for both bulk and rhizosphere soil. Cluster analysis of bacterial profiles revealed that the rhizosphere community of each site was generally more closely related to the bulk soil community of that site rather than to rhizosphere communities of other sites. Hence, bacterial community structure within the rhizosphere of C. arenaria appeared to be determined to a large extent by the bulk soil community composition. This conclusion was supported by a reciprocal planting experiment, where C. arenaria shoots of different sites yielded highly similar rhizosphere communities when planted in the same soil.     

Responses of methane oxidation to temperature and water content in cover soil of a boreal landfill

Methane oxidation in a cover soil of a landfill located in a boreal climate was studied at temperatures ranging from 1-19 °C and with water content of 7-34% of dry weight (dw), corresponding to 17-81% of water-holding capacity (WHC) in order to better understand the factors regulating CH₄ oxidation at low temperatures. CH₄ consumption was detected at all the temperatures studied (1-19 °C) and an increase in CH₄ consumption rate in consecutive incubations was obtained even at 1 °C, indicating activation or increase in enzymes and/or microorganisms responsible for CH₄ oxidation. CH₄ consumption was reduced with low water content (17%WHC) at all temperatures. The response of CH₄ consumption to temperature was high with Q₁₀ values from 6.5 to 8.4 and dependent on water content: at 33%WHC or more an increase in water content was accompanied by a decrease in Q₁₀ values. The responses of CH₄ consumption to water content varied at different temperatures so that at 1-6 °C, CH₄ consumption increased along with water content (33-67%WHC) while at 12-19 °C the response was curvilinear, peaking at 50%WHC. CH₄ consumption was less tolerant (higher Q₁₀ values; 6.5-8.4) of low temperatures compared to basal respiration (Q₁₀ values for CO₂ production and O₂ consumption 3.2-4.0). Overall, the present results demonstrate the presence of CH₄-oxidizing microorganisms, which are able to consume CH₄ and to be activated or grow at low temperatures, suggesting that CH₄ oxidation can reduce atmospheric CH₄ emissions from methanogenic environments even in cold climates.     

盐地碱蓬根际土壤细菌群落结构及其功能

盐地碱蓬作为生物改良盐碱地的理想材料,其根际土壤微生物对土壤改良发挥着重要作用。为了深入探索环渤海滨海盐碱地碱蓬根际土壤细菌群落结构组成及其功能,采用Illumina Misep高通量测序平台对环渤海地区滨海盐碱地盐地碱蓬根际土壤和裸地土壤进行测序。从16个样本中获得有效序列734 792条, 4 285个OTUs,归属于41门、100纲、282目、400科、892属、1 577种。盐地碱蓬根际土壤细菌群落由变形菌门(Proteobacteria)、放线菌门(Actinobacteria)、绿弯曲门(Chloroflexi)、拟杆菌门(Bacteroidetes)、芽单胞菌门(Gemmatimonadetes)、酸杆菌门(Acidobacteria)、厚壁菌门(Firmicutes)、蓝藻细菌门(Cyanobacteria)、髌骨细菌门(Patescibacteria、浮霉菌门(Planctomycetes)组成。Alpha多样性计算结果表明,盐地碱蓬根际土壤细菌群落结构多样性高并与裸地土壤间差异显著;LEfSe(LDAEffectSize)分析发现,盐地碱蓬与裸地差异指示种明显不同。PCoA与相关性Heatmap表明,盐地碱蓬、速效氮、速效钾、速效磷、电导率是影响土壤细菌目类水平群落组成的主要因子。PICRUSt(Phylogenetic InvestigationofCommunitiesbyReconstructionofUnobserved States)分析表明微生物群落在新陈代谢等40个功能方面盐地碱蓬根际土壤比裸地土壤高。本研究表明盐地碱蓬覆盖能够降低土壤盐分,增加土壤养分,对土壤细菌群落多样性及其功能有积极作用。     

紫茎泽兰和黄顶菊入侵对土壤微生物群落结构和旱稻生长的影响

为比较入侵植物与本地植物对土壤微生态影响的差异, 探索外来植物入侵的土壤微生物学机制, 本研究通过同质园试验, 比较分析了2种入侵菊科植物(紫茎泽兰、黄顶菊)和2种本地植物(马唐、猪毛菜)对土壤肥力和微生物群落的影响, 并通过盆栽反馈试验验证入侵植物改变后的土壤微生物对本地植物旱稻生长的反馈作用。同质园试验结果表明: 2种入侵植物和2种本地植物分别对土壤微生态产生了不同的影响, 尤其是紫茎泽兰显著提高了土壤有效氮、有效磷和有效钾含量,紫茎泽兰根际土壤中有效氮含量为39.80 mg·kg^-1,有效磷含量为48.52 mg·kg^-1。磷脂脂肪酸指纹图谱结果表明, 2种入侵植物与2种本地植物相比, 较显著增加了土壤中放线菌数量, 而紫茎泽兰比其他3种植物显著增加了细菌和真菌数量。盆栽结果表明: 黄顶菊生长过的土壤灭菌后比灭菌前旱稻株高增加113%, 紫茎泽兰也使旱稻的株高增加17%。由以上结果可知, 紫茎泽兰和黄顶菊可能通过改变入侵地土壤的微环境, 形成利于其自身生长扩散的微生态环境从而实现其成功入侵。     

连作对再植枸杞根际细菌群落多样性和群落结构的影响研究

受枸杞道地产区土地资源等因素限制,连作障碍已成为影响枸杞产业发展的重要原因之一,导致严重的经济损失.研究连作条件下枸杞农田土壤生态系统微生物群落的演替规律对枸杞产业的可持续发展具有重要的理论意义.以宁夏银川市南梁农场连作多年的枸杞地为研究对象,利用Illumina MiSeq测序技术分析了连作对再植枸杞根际/非根际细菌群落的影响.结果表明,连作地显著抑制再植枸杞苗地径的增加,且其土壤pH较对照样地显著降低(p<0.05).测序结果证实,与对照样地相比,连作地再植枸杞根际土壤细菌物种数显著降低(p<0.05),细菌群落α多样性下降(p>0.05).主坐标分析表明,连作和对照样地间枸杞非根际细菌群落结构无明显差异,但连作显著改变再植枸杞根际细菌的群落结构.对细菌群落丰度的统计分析发现,连作地枸杞根际浮霉菌门、非根际假单胞菌门的相对丰度较对照样地显著降低(p<0.05).此外,冗余分析结果表明:枸杞园土壤pH和有效磷含量是影响枸杞非根际土壤细菌群落结构变化的主要因素,分别解释了41.8%和35.4%的群落结构变化(p<0.05),其他土壤因子无统计学意义,但土壤理化因子对再植枸杞根际细菌群落结构变化的影响均未达显著水平.这些结果证实连作能够显著抑制再植枸杞生长、影响再植枸杞根际细菌群落结构和多样性,干扰枸杞与土壤细菌群落间的互作关系.这些研究结果将为解析枸杞连作障碍机制提供理论基础.     

Methane oxidation in the soil surface layer of a flooded rice field and the effect of ammonium

Summary The CH₄ flux from intact soil cores of a flooded rice field in Italy was measured under aerobic and anaerobic incubation conditions. The difference between the anaerobic and aerobic CH₄ fluxes was apparently due to CH₄ oxidation in the oxic soil surface layer. This conclusion was supported by measurements of the vertical CH₄ profile in the upper 2-cm layer, and of the V _max of CH₄ oxidation in slurried samples of the soil surface layer. About 80% of the CH₄ was oxidized during its passage through the soil surface layer. CH₄ oxidation was apparently limited by the concentration of CH₄ and/or O₂ in the active surface layer. The addition of ammonium to the water layer on top of the soil core reversibly increased the aerobic CH₄ fluxes due to inhibition of CH₄ oxidation in the soil surface layer.     

Microbial activity and bacterial composition of H2-treated soils with net CO2 fixation

The effects of H₂ gas treatment of an agricultural soil cultivated previously with a mixture of clover (Trifolium pratense) and alfalfa (Medicago sativa) on CO₂ dynamics and microbial activity and composition were analyzed. The H₂ emission rate of 250 nmol H₂ g⁻¹ soil h⁻¹ was similar to the upper limit of estimated H₂ amounts emitted from N₂ fixing nodules into the surrounding soil ([Dong, Z., Layzell, D.B., 2001. H₂ oxidation, O₂ uptake and CO₂ fixation in hydrogen treated soil. Plant and Soil 229, 1-12.]). After 1 week of H₂ supply to soil samples simultaneously with H₂ uptake net CO₂ production declined continuously and this finally led to a net CO₂ fixation rate in the H₂-treated soil of 8 nmol CO₂ g⁻¹ soil h⁻¹. The time course of H₂ uptake and CO₂ fixation in the soils corresponded with an increase in microbial activity and biomass of the H₂-treated soil determined by microcalorimetric measurements, fluorescence in situ hybridization analysis (FISH) and DNA staining (DAPI). Shifts in the bacterial community structure caused by the supply of H₂ were recorded. While the H₂ treatment stimulated β-and γ-subclasses of Proteobacteria, it had no significant effect on α-Proteobacteria. In addition, FISH-detectable bacteria of the Cytophaga-Flavobacterium-Bacteroides phylum increased in numbers.     

苏云金芽孢杆菌菌剂对棉花根际土壤细菌数量及多样性的影响

采用稀释平板培养法与PCR-DGGE技术, 以阿维菌素为阳性对照, 水为阴性对照, 研究了大田喷施推荐剂量(0.1 kg·hm^-2)和高剂量(10 kg·hm^-2)苏云金芽孢杆菌(Bt)菌剂对棉花根际土壤细菌种群数量及结构的影响。结果表明, 喷雾处理后1~3 d, 不同处理组土壤细菌数量间无显著性差异, 在3 d时细菌数量均值达到最大, 之后开始下降, 12 d后清水对照、推荐剂量Bt菌剂、高剂量Bt菌剂处理组土壤细菌数量均值维持在4.0×107 CFU·g^-1左右; 推荐剂量Bt菌剂处理样品土壤细菌数量在6 d时显著高于清水对照, 其余时间与清水对照间无显著性差异; 高剂量Bt菌剂处理与清水对照在整个试验期间均无显著性差异; 阿维菌素处理组土壤细菌数量在0~6 d内与清水对照无显著性差异, 而在12~45 d内显著低于其他3个处理组。DGGE图谱显示, Bt菌剂处理对棉花根际土壤17种细菌均无显著抑制作用。聚类分析结果表明, Bt菌剂对土壤细菌群落结构的扰动在12 d后得到恢复。与阴性对照组相比, Bt菌剂对土壤细菌多样性指数无显著影响, 而阳性对照阿维菌素对土壤细菌种群消长和多样性指数有较强的影响。对DGGE图谱中17条电泳条带的序列分析, 证明棉花根际土壤中存在起固氮作用的慢生根瘤菌属细菌和具有污染修复与净化活性的鞘脂菌属、鞘氨醇单胞菌属和红球菌属细菌。Bt菌剂与阿维菌素处理均对这些土壤有益菌群无明显不利影响。总体结果表明, Bt菌剂无论是在正常推荐剂量下还是在较高剂量(推荐剂量的100倍)下使用, 对棉花根际土壤微生态环境产生的冲击都较小, 是一种生态安全性较高的生物农药。     

续断菊与玉米间作的铅累积及根系低分子量有机酸分泌特征研究

为探明间作作物根系分泌低分子量有机酸对土壤重金属生物有效性的影响,采用矿区周边农田土壤进行室内盆栽试验,研究了云南本土超累积植物续断菊(Sonchus asper L. Hill)和玉米(Zea mays L.)间作下,植物生长、根系低分子量有机酸分泌量、根际土壤Pb提取形态以及植物Pb积累特点。结果表明:与单作相比,间作续断菊地上部和根部生物量、根长、根内径和根系体积均显著增加(P0.05);间作玉米根部生物量、根长、根内径和根系体积显著增加(P0.05)。柠檬酸、草酸是续断菊和玉米根系分泌的主要低分子量有机酸,间作导致续断菊根系低分子量有机酸的分泌量增加,玉米根系低分子量有机酸的分泌量降低。续断菊根际土壤生物有效态Pb含量增加85.2%(P0.05),而玉米根际土壤生物有效态Pb含量降低26.1%(P0.05)。续断菊体内Pb含量显著增加18.0%～43.2%(P0.05),富集系数提高26.0%,而转运系数降低42.0%;玉米地上部Pb含量显著降低24.3%(P0.05),转运系数降低43.1%。续断菊根系分泌的柠檬酸和草酸数量,均与土壤生物有效态Pb含量呈显著正相关,且土壤有效态Pb含量分别与续断菊地上部和根部的Pb含量呈显著正相关。表明间作增加了续断菊对Pb的吸收积累量,与间作体系植物根系分泌的低分子有机酸介导下的土壤有效态Pb含量增加密切相关。     

Soil fumigation and compost amendment alter soil microbial community composition but do not improve tree growth or yield in an apple replant site

Apple replant disease (ARD) is a disease complex that reduces survival, growth and yield of replanted trees, and is often encountered in establishing new orchards on old sites. Methyl bromide (MB) has been the fumigant used most widely to control ARD, but alternatives to MB and cultural methods of control are needed. In this experiment, we evaluated the response of soil microbial communities and tree growth and yield to three pre-plant soil treatments (compost amendment, soil treatment with a broad-spectrum fumigant, and untreated controls), and use of five clonal rootstock genotypes (M.7, M.26, CG.6210, G.30 and G.16), in an apple replant site in Ithaca, New York. Polymerase chain reaction (PCR)—denaturing gradient gel electrophoresis (DGGE) analysis was used to assess changes in the community composition of bacteria and fungi in the bulk soil 8, 10, 18 and 22 months after trees were replanted. PCR-DGGE was also used to compare the community composition of bacteria, fungi and pseudomonads in untreated rhizosphere soil of the five rootstock genotypes 31 months after planting. Tree caliper and extension growth were measured annually in November from 2002 to 2004. Apple yield data were recorded in 2004, the first fruiting year after planting. Trees on CG.6210 rootstocks had the most growth and highest yield, while trees on M.26 rootstocks had the least growth and lowest yield. Tree growth and yield were not affected by pre-plant soil treatment except for lateral extension growth, which was longer in trees growing in compost-treated soil in 2003 as compared to those in the fumigation treatment. Bulk soil bacterial PCR-DGGE fingerprints differed strongly among the different soil treatments 1 year after their application, with the fingerprints derived from each pre-plant soil treatment clustering separately in a hierarchical cluster analysis. However, the differences in bacterial communities between the soil treatments diminished during the second year after planting. Soil fungal communities converged more rapidly than bacterial communities, with no discernable pattern related to pre-plant soil treatments 10 months after replanting. Changes in bulk soil bacterial and fungal communities in response to soil treatments had no obvious correlation with tree performance. On the other hand, rootstock genotypes modified their rhizosphere environments which differed significantly in their bacterial, pseudomonad, fungal and oomycete communities. Cluster analysis of PCR-DGGE fingerprints of fungal and pseudomonad rhizosphere community DNA revealed two distinct clusters. For both analyses, soil sampled from the rhizosphere of the two higher yielding rootstock genotypes clustered together, while the lower yielding rootstock genotypes also clustered together. These results suggest that the fungal and pseudomonad communities that have developed in the rhizosphere of the different rootstock genotypes may be one factor influencing tree growth and yield at this apple replant site.     

Zinc effects on a soil bacterial flora characterized by fatty acid composition of the isolates

Summary Effects of zinc (zinc chloride) added to a sandy clay loam soil on its bacterial flora were investigated by the study of cellular fatty acid composition of the isolates. The soil amended with glucose (carbon source) and ammonium sulfate (nitrogen source) was incubated in the presence (1.0 mg/g) or absence of zinc for 96 h. Bacterial strains were isolated on albumin agar from the incubated soils every 24 h. Their cellular fatty acid composition was analyzed and the strains were classified according to the percentage distribution pattern of the fatty acid composition.Two and four dominant patterns of the fatty acid composition were obtained in the isolates from the control soil and the soil with zinc added, respectively. They were different from one another. Most of the dominant strains isolated from the soil with added zinc were zinc-tolerant, and it was suggested that the selection for zinc tolerance readily proceeded.     

宁夏枸杞生长季气候变化特征及其影响

为明确宁夏枸杞（Lycium barbarum L.）生长季气候变化特征及其对枸杞生长的影响,为决策部门有效利用气候资源提供数据支撑,本文基于1961-2017年宁夏17个气象站点的观测数据,采用数理统计分析、Mann-Kendall突变检测、气候倾向率和相关性检验等方法,分析了宁夏枸杞生育期气候变化特征及其影响。结果表明：气候暖干化是宁夏枸杞生育期气候变化的主要特征。近57 a来,气候变暖使宁夏枸杞生育期平均气温、≥ 10℃积温及日照时数增加,其线性趋势通过了0.001显著性水平检验。平均气温在1990年左右发生突变,1991-2017年平均气温比1961-1990年上升了0.7℃。≥ 10℃积温在20世纪90年代增加速率最大,2003年发生突变,比突变前年平均增加370.6℃。日照时数在2005年前后发生突变,突变后平均年日照时数增加93.9 h。降水量整体呈弱的减少趋势。气候变化对枸杞生长发育的影响利多弊少。气温升高,春季气温回升快,积温增多,整个生育期热量条件充足,使枸杞树萌芽期提前,总生育期延长,单产提高;果熟期、采摘期降水量减少,使枸杞炭疽病、黑果病发生机率减少,有利于品质提高。研究发现,中宁枸杞产量与稳定通过5℃到枸杞萌芽期的积温、≥ 10℃积温均显著正相关。同时,气候变暖增加了冬季农田土壤水分蒸发,病虫害发生有增加趋势。如何充分利用有利的气候资源,减轻或避免气候变化对枸杞生产的不利影响是需要进一步研究的重要内容。     

Reduction of bacterial growth by a vesicular-arbuscular mycorrhizal fungus in the rhizosphere of cucumber (Cucumis sativus L.)

Summary Cucumber was grown in a partially sterilized sand-soil mixture with the vesicular-arbuscular mycorrhizal (VAM) fungus Glomus fasciculatum or left uninoculated. Fresh soil extract was places in polyvinyl chloride tubes without propagules of mycorrhizal fungi. Root tips and root segments with adhering soil, bulk soil, and soil from unplanted tubes were sampled after 4 weeks. Samples were labelled with [³H]-thymidine and bacteria in different size classes were measured after staining by acridine orange. The presence of VAM decreased the rate of bacterial DNA synthesis, decreased the bacterial biomass, and changed the spatial pattern of bacterial growth compared to non-mycorrhizal cucumbers. The [³H]-thymidine incorporation was significantly higher on root tips in the top of tubes, and on root segments and bulk soil in the center of tubes on non-mycorrhizal plants compared to mycorrhizal plants. At the bottom of the tubes, the [³H]-thymidine incorporation was significantly higher on root tips of mycorrhizal plants. Correspondingly, the bacterial biovolumes of rods with dimension 0.28–0.40×1.1–1.6 m, from the bulk soil in the center of tubes and from root segments in the center and top of tubes, and of cocci with a diameter of 0.55–0.78 m in the bulk soil in the center of tubes, were significantly reduced by VAM fungi. The extremely high bacterial biomass (1–7 mg C g^-1 dry weight soil) was significant reduced by mycorrhizal colonization on root segments and in bulk soil. The incorporation of [³H]-thymidine was around one order of magnitude lower compared to other rhizosphere measurements, probably because pseudomonads that did not incorporate [³H]-thymidine dominated the bacterial population. The VAM probably decreased the amount of plant root-derived organic matter available for bacterial growth, and increased bacterial spatial variability by competition. Thus VAM plants seem to be better adapted to compete with the saprophytic soil microflora for common nutrients, e.g., N and P, compared to non-mycorrhizal plants.     

再植枸杞根际真菌群落对长期连作的响应研究

受枸杞自身种植特点和道地产区土地资源限制,连作障碍已成为制约宁夏枸杞产业可持续发展的主要因素之一,导致严重的经济损失和生态问题。前期研究表明,连作能够显著影响再植枸杞根际土壤细菌的群落结构和多样性,但就连作对真菌群落结构和功能的影响目前仍不清楚。本文利用实时荧光定量PCR和高通量测序技术,研究连作对再植枸杞根际真菌群落丰度及多样性的影响。实时荧光定量PCR分析表明,与对照样地相比,连作显著促进再植枸杞根际及非根际土壤中细菌和真菌的丰度。但连作对真菌的促进作用明显高于细菌,导致细菌/真菌比例失衡,使再植枸杞根际及非根际土壤微生物环境偏向于真菌型。对测序结果的分析发现,所测定样地中枸杞根际及非根际土壤中的优势真菌门分别为子囊菌门、担子菌门、接合菌门、壶菌门及球囊菌门,其中连作地再植枸杞根际子囊菌门的相对丰度较对照样地显著降低,而接合菌门的相对丰度则显著增加(P0.05)。FUNGuild真菌功能预测也证实连作显著抑制再植枸杞根际土壤丛枝菌根真菌的相对丰度(P0.05)。基于距离的冗余分析(db-RDA)结果表明,土壤pH、电导率、硝态氮和有效磷含量是影响枸杞根际土壤真菌群落变化的主要因子(P0.05),而土壤硝态氮和有效磷含量则是解释非根际土壤真菌群落变化的主要因子(P0.05)。这些结果说明长期施用化肥可能是改变连作地再植枸杞根际土壤真菌群落结构及枸杞-真菌互作关系的主要因素之一。这一研究结果为理解枸杞连作障碍的形成机制提供理论基础。     

污泥复混肥对早熟禾草坪草生长性状及土壤酶活性的影响

为使城市生活污泥得以无害化、资源化综合利用,通过盆栽试验,研究了经无害化处理的生活污泥辅以化肥配制的污泥复混肥对早熟禾草坪草生长以及土壤酶活性的影响.结果表明:在氮、磷、钾施用总量相同的条件下,随复混肥中污泥含量的增加,草坪土壤脲酶、蛋白酶、转化酶活性显著提高,草坪草的颜色明显改善,剪草量、分蘖数显著增加,特别在生长中后期草坪颜色提高两个等级,剪草量鲜重增加10～15g·盆-1,分蘖数增加30～50个·盆-1,细胞膜透性降低40%.但污泥提供氮素养分占总氮量的60%以上时,其肥料效应的增加不再显著,故在配制污泥复混肥时,以污泥提供氮素养分占总氮量的60%左右为宜.     

Differences in the activity and bacterial community structure of drained grassland and forest peat soils

The microbial activity and bacterial community structure were investigated in two types of peat soil in a temperate marsh. The first, a drained grassland fen soil, has a neutral pH with partially degraded peat in the upper oxic soil horizons (16% soil organic carbon). The second, a bog soil, was sampled in a swampy forest and has a very high soil organic carbon content (45%), a low pH (4.5), and has occasional anoxic conditions in the upper soil horizons due to the high water table level. The microbial activity in the two soils was measured as the basal and substrate-induced respiration (SIR). Unexpectedly, the SIR (μl CO₂ g⁻¹ dry soil) was higher in the bog than in the fen soil, but lower when CO₂ production was expressed per volume of soil. This may be explained by the notable difference in the bulk densities of the two soils. The bacterial communities were assessed by terminal restriction fragment length polymorphism (T-RFLP) profiling of 16S rRNA genes and indicated differences between the two soils. The differences were determined by the soil characteristics rather than the season in which the soil was sampled. The 16S rRNA gene libraries, constructed from the two soils, revealed high proportions of sequences assigned to the Acidobacteria phylum. Each library contained a distinct set of phylogenetic subgroups of this important group of bacteria.     

Response of microbial community composition and activity in agricultural and grassland soils after a simulated rainfall

Rainfall in Mediterranean climates may affect soil microbial processes and communities differently in agricultural vs. grassland soils. We explored the hypothesis that land use intensification decreases the resistance of microbial community composition and activity to perturbation. Soil carbon (C) and nitrogen (N) dynamics and microbial responses to a simulated Spring rainfall were measured in grassland and agricultural ecosystems. The California ecosystems consisted of two paired sets: annual vegetable crops and annual grassland in Salinas Valley, and perennial grass agriculture and native perennial grassland in Carmel Valley. Soil types of the respective ecosystem pairs were derived from granitic parent material and had sandy loam textures. Intact cores (30 cm deep) were collected in March 1999. After equilibration, dry soil cores (approx. −1 to −2 MPa) were exposed to a simulated Spring rainfall of 2.4 cm, and then were measured at 0, 6, 24, and 120 h after rewetting. Microbial biomass C (MBC) and inorganic N did not respond to rewetting. N₂O and CO₂ efflux and respiration increased after rewetting in all soils, with larger responses in the grassland than in the agricultural soils. Phospholipid fatty acid (PLFA) profiles indicated that changes in microbial community composition after rewetting were most pronounced in intensive vegetable production, followed by the relict perennial grassland. Changes in specific PLFA markers were not consistent across all sites. There were more similarities among microbial groups associated with PLFA markers in agricultural ecosystems than grassland ecosystems. Differences in responses of microbial communities may be related to the different plant species composition of the grasslands. Agricultural intensification appeared to decrease microbial diversity, as estimated from numbers of individual PLFA identified for each ecosystem, and reduce resistance to change in microbial community composition after rewetting. In the agricultural systems, reductions in both the measures of microbial diversity and the resistance of the microbial community composition to change after a perturbation were associated with lower ecosystem function, i.e. lower microbial responses to increased moisture availability.     

The bacterial community of tomato rhizosphere is modified by inoculation with arbuscular mycorrhizal fungi but unaffected by soil enrichment with mycorrhizal root exudates or inoculation with Phytophthora nicotianae

Arbuscular mycorrhizal (AM) fungi have been shown to induce the biocontrol of soilborne diseases, to change the composition of root exudates and to modify the bacterial community structure of the rhizosphere, leading to the formation of the mycorrhizosphere. Tomato plants were grown in a compartmentalized soil system and were either submitted to direct mycorrhizal colonization or to enrichment of the soil with exudates collected from mycorrhizal tomato plants, with the corresponding negative controls. Three weeks after planting, the plants were inoculated or not with the soilborne pathogen Phytophthora nicotianae growing through a membrane from an adjacent infected compartment. At harvest, a PCR-Denaturing gradient gel electrophoresis analysis of 16S rRNA gene fragments amplified from the total DNA extracted from each plant rhizosphere was performed. Root colonization with the AM fungi Glomus intraradices or Glomus mosseae induced significant changes in the bacterial community structure of tomato rhizosphere, compared to non-mycorrhizal plants, while enrichment with root exudates collected from mycorrhizal or non-mycorrhizal plants had no effect. Our results support that the effect of AM fungi on rhizosphere bacteria would not be mediated by compounds present in root exudates of mycorrhizal plants but rather by physical or chemical factors associated with the mycelium, volatiles and/or root surface bound substrates. Moreover, infection of mycorrhizal or non-mycorrhizal plants with P. nicotianae did not significantly affect the bacterial community structure suggesting that rhizosphere bacteria would be less sensitive to the pathogen invasion than to mycorrhizal colonization. Of 96 unique sequences detected in the tomato rhizosphere, eight were specific to mycorrhizal fungi, including two Pseudomonas, a Bacillus simplex, an Herbaspirilium and an Acidobacterium. One Verrucomicrobium was common to rhizospheres of mycorrhizal plants and of plants watered with mycorrhizal root exudates.     

Methane concentrations and methanotrophic community structure influence the response of soil methane oxidation to nitrogen content in a temperate forest

Methane oxidation in forest soils removes atmospheric CH₄. Many studies have determined methane uptake rates and their controlling variables, yet the microorganisms involved have rarely been assessed simultaneously over the longer term. We measured methane uptake rates and the community structure of methanotrophic bacteria in temperate forest soil (sandy clay loam) on a monthly basis for two years in South Korea. Methane uptake rates at the field site did not show any seasonal patterns, and net uptake occurred throughout both years. In situ uptake rates and uptake potentials determined in the laboratory were 2.92 ± 4.07 mg CH₄ m⁻² day⁻¹ and 51.6 ± 45.8 ng CH₄ g⁻¹ soil day⁻¹, respectively. Contrary to results from other studies, in situ oxidation rates were positively correlated with soil nitrate concentrations. Short-term experimental nitrate addition (0.20-1.95 μg N g⁻¹ soil) significantly stimulated oxidation rates under low methane concentrations (1.7-2.0 ppmv CH₄), but significantly inhibited oxidation under high methane concentrations (300 ppmv CH₄). We analyzed the community structures of methanotrophic bacteria using a DNA-based fingerprinting method (T-RFLP). Type II methanotrophs dominated under low methane concentrations while Type I methanotrophs dominated under high methane concentrations. Nitrogen addition selectively inhibited Type I methanotrophic bacteria. Overall, the results of this study indicate that the effects of inorganic N on methane uptake depend on methane concentrations and that such a response is related to the dissimilar activation or inhibition of different types of methanotrophic bacteria.     

阿拉尔垦区新疆杨防护林化学计量特征分析

[目的] 以新疆阿拉尔垦区不同龄级新疆杨防护林为研究对象,对不同龄级新疆杨叶—枝—凋落物—土壤的C,N,P含量及化学计量特征进行分析比较,为新疆南部农田防护林后期保育的可持续发展提供理论基础数据。[结果] C,N,P含量与化学计算学特征为： ①C含量为凋落物(395.14 g/kg)>叶(365.29 g/kg)>枝(363.84 g/kg)>土壤(9.47 g/kg),N含量为叶(13.37 g/kg)>凋落物(9.10 g/kg)>枝(7.31 g/kg)>土壤(0.72 g/kg),P含量为叶(0.46 g/kg)>枝(0.43 g/kg)>土壤(0.37 g/kg)>凋落物(0.27 g/kg)。②叶—土壤与全国平均值相比呈现出低C,低N,低P的格局。土壤C含量随龄级的增加呈“升—降—升”趋势,除第Ⅲ龄级外,其他龄级土壤N含量均表现出随土层加深而逐渐降低的趋势。土壤P含量随龄级的增加整体呈上升趋势,且同一土层不同龄级之间存在显著差异(p<0.05)。③土壤C∶N (13.05)高于中国土壤均值(C∶N 11.90),C∶P,N∶P (24.04,1.83)均值低于中国土壤均值(C∶P=60.0,N∶P=5.20)。④新疆杨0—80 cm土层N,P含量与叶N含量呈极显著负相关(p<0.01)与叶P呈极显著正相关(p<0.01),凋落物N含量与表层土壤N含量呈极显著正相关关系(p<0.01)。凋落物P含量与20—40 cm土壤P含量呈极显著负相关关系(p<0.01)。[结论] 由于缺乏对新疆杨防护林后期的管护,导致阿拉尔垦区新疆杨防护林在生长过程中受N,P元素的限制。因此,需适当增添N,P肥,以此来改善土壤肥力,提高林分质量。