Mineralization of bacteria and fungi in chloroform-fumigated soils

It has been suggested by others that the size of the flush of mineralization caused by CHC1₃ fumigation can be used to estimate the amount of microbial biomass in soils. Calculation of biomass from the flush requires that the proportion of CHCl₃-killed cell C mineralized be known. To determine this proportion, 15 species of [¹⁴C]labelled fungi and 12 species of [¹⁴C]labelled bacteria were added to four types of soil and these were fumigated for 24 h with CHC1₃, reinoculated with unfumigated soil, and incubated at 22°C for 10 days. The average percentage mineralization of the fungi was 43.7 ± 5.3, while the average for the bacteria was 33.3 ± 9.9. Using a 1:3 ratio for distribution of total biomass between the bacterial and fungal populations, respectively, it was calculated that the average mineralization of both types of cells was 41.1%. In experiments conducted to determine if CHC1₃ vapour alters stabilized microbial metabolites or dead microbial cells in a manner which makes them more susceptible to degradation, it was found that both fumigated and unfumigated dead fungal materials mineralized to the same extent in soil during 10 days of incubation.     

Bacterial,fungal and protozoan responses to chloroform fumigation in stored soil

Microbial biomass estimated by CO₂ evolution following fumigation was 2.5–14.7 times greater than that estimated by direct microscopy in prairie soil. Bacteria, fungi and protozoa were counted by direct microscopy before, during and periodically for 10 days following chloroform fumigation and compared with microbial biomass as estimated by CO₂ evolution and N mineralization following chloroform fumigation. Protozoan populations were reduced to below detection levels immediately after fumigation and remained below detection levels during incubation following fumigation. Bacterial and fungal populations were reduced by fumigation to 37–79% of their original populations but usually recovered to their initial numbers by the second day following fumigation. In one case protozoa contributed up to 74 μg C, or about half of the total microbial biomass, to CO₂ evolution following fumigation.Microbial biomass was estimated in soil wetted to 60% of water-holding capacity (WHC) 1 wk or 1 day before fumigation. Microbial activity changed during the 1 wk incubation before fumigation but not total microbial biomass determined by microscopy.The ratio of CO₂ evolved-to-N mineralized followed fumigation changed in direct proportion to the ratio of fungal-to-bacterial biomass present in the soil before fumigation. Although more experiments with different soils should be performed, these results indicate that CO₂ evolved or N mineralized varies with the ratio of fungal-to-bacterial biomass initially present.     

Decomposition of 14C- and 15N-labelled microbial cells in soil

To obtain detailed information on the quantities and characteristics of nitrogen derived from mineralizing dead microbial biomass in soil, ¹⁴C- and ¹⁵N-labelled microorganisms, i.e. three eukaryotic (fungal) species, two prokaryotic species or their mixture (eukaryotic to prokaryotic cells = 8:2), were grown in vitro, dried, ground and added to parabrown earth and chernozem soils, respectively. The mean percent of ¹⁴C decomposition of labelled microorganisms obtained after 10 days was 43 ± 6.3% for parabrown earth and 34 ± 4.0% for chernozem soil. About 50% of the C in the dead microorganisms was mineralized during the first 28 days of incubation. About 76% of the flush of soil organic N mineralization within 28 days, which was caused by the drying-rewetting treatment, was derived from dead microbial biomass in soil. About 33% of the added dead microbial-¹⁵N was mineralized in parabrown earth soil during 28 days of incubation and about 37% of newly immobilized ¹⁵N during the decomposition of added microorganisms was mineralized during the 28 days following a dryingrewetting treatment.     

Chloroform fumigation and the release of soil nitrogen: The effects of fumigation time and temperature

Fumigation with CHC1₃ (24 h, 25°C) increased the amount of NH₄-N and total N extracted by 0.5 M K₂SO₄ from two soils (one arable, one grassland). The amount of N released by CHC1₃ increased with the duration of fumigation up to 5 days, when it levelled off. Between about 10–34% of the total N released by CHC1₃ was in the form of NH₄-N, the proportion increasing with duration of exposure.When a grassland soil that had received a field application of ¹⁵N-labelled fertilizer 1 yr previously was fumigated, the N released by CHC1₃ was 4 times more heavily labelled than the soil N as a whole. Prolonging the exposure of this soil to CHC1₃ increased the amount of total N released, but hardly altered the proportion of labelled N in the CHC1₃-released N, suggesting that N is being released from a single soil fraction. The most likely soil fraction is the soil microbial biomass. It is suggested that CHC1₃ does not alter the K₂SO₄-extractability of soil-N fractions other than microbial N and that the extra N released by CHC1₃ and extracted by K₂SO₄ gives a direct measure of soil microbial biomass N.In contrast to fumigation done at lower temperatures, less total N was released by soil fumigated at 60°C, or above, than was released from unfumigated soil held at the same temperature. The greater release of N in the non-fumigated soils above 60°C could have been due to soil enzymic processes which were inhibited by CHC1₃ in the fumigated soil.     

Mineralisation dans le sol de materiaux microbiens marques au carbone 14 et a l'azote 15: Quantification de l'azote de la biomasse microbienne

The mineralization of microbial material of different C-to-N ratios (5.2, 7.9, 10.2, 12.7) was followed in fumigated soil. The microbial materials used were from Aspergillus flavus cultures, grown in liquid media and labelled with [¹⁴C]glucose and (¹⁵NN4)3804. Three contrasting soils were used and the microbial materials incubated with the fumigated soils for 28 days at 28°C.The evolution of the added organic microbial C was fast: 80% of the [¹⁴C]CO₂ produced during the whole 28 days incubation was evolved in the first week. Microbial C mineralization was mainly related to soil type; the C-to-N ratio had small effect on the ratio (mineralized microbial carbon-to-added microbial carbon). Calculation of the K_c- coefficient (the fraction of the added microbial C mineralized in 7 days) shows that K_c values lie between 0.38 and 0.43 in the 3 soils.Organic N in the added microbial material also breaks down quickly: between 60 and 100% of the organic nitrogen mineralized was evolved during the first week of incubation. Mineralization kinetics are related to soil type and to the C-to-N ratio of the microbial material.The proportion of N mineralized in 7 days was lower in an acid soil than in near neutral soils and lower with high C-to-N ratio material than with low C-to-N ratio material. The ratio (mineralized microbial N-to-added microbial N) depends on soil type and is negatively correlated with the C-to-N ratio of the microbial material. The K_N value (the fraction of the added microbial N mineralized in 7 days) lies between 0.22 and 0.47 for the three soils and four materials investigated. The added microbial material induced a priming effect on soil native N: materials with C-to-N ratios of 10.2 and 12.7 produced negative priming effects whereas materials with C-to-N ratios of 5.2 and 7.9 sometimes produced a positive priming action.From the relationship between the C-to-N ratio of the added material and the (mineralized microbial C-to-mineralized microbial N) ratio, the soil native microbial biomass was estimated using the fiush-C-to-flush-N ratio. Biomass nitrogen was then calculated from the formula biomass-N = biomassC/(biomass C-to-N ratio). Calculated in this way, 2–4% of the total nitrogen in the three soils was in microbial biomass.     

Role of soil drying in nitrogen mineralization and microbial community function in semi-arid grasslands of north-west Australia

We examined effects of wetting and then progressive drying on nitrogen (N) mineralization rates and microbial community composition, biomass and activity of soils from spinifex (Triodia R. Br.) grasslands of the semi-arid Pilbara region of northern Australia. We compared soils under and between spinifex hummocks and also examined impacts of fire history on soils over a 28 d laboratory incubation. Soil water potentials were initially adjusted to −100 kPa and monitored as soils dried. We estimated N mineralization by measuring changes in amounts of nitrate (NO₃⁻-N) and ammonium (NH₄⁺-N) over time and with change in soil water potential. Microbial activity was assessed by amounts of CO₂ respired. Phospholipid fatty acid (PLFA) analyses were used to characterize shifts in microbial community composition during soil drying. Net N mineralized under hummocks was twice that of open spaces between hummocks and mineralization rates followed first-order kinetics. An initial N mineralization flush following re-wetting accounted for more than 90% of the total amount of N mineralized during the incubation. Initial microbial biomass under hummocks was twice that of open areas between hummocks, but after 28 d microbial biomass was<2 μ g⁻¹ ninhydrin N regardless of position. Respiration of CO₂ from soils under hummocks was more than double that of soils from between hummocks. N mineralization, microbial biomass and microbial activity were negligible once soils had dried to −1000 kPa. Microbial community composition was also significantly different between 0 and 28 d of the incubation but was not influenced by burning treatment or position. Regression analysis showed that soil water potential, microbial biomass N, NO₃⁻-N, % C and δ¹⁵N all explained significant proportions of the variance in microbial community composition when modelled individually. However, sequential multiple regression analysis determined only microbial biomass was significant in explaining variance of microbial community compositions. Nitrogen mineralization rates and microbial biomass did not differ between burned and unburned sites suggesting that any effects of fire are mostly short-lived. We conclude that the highly labile nature of much of soil organic N in these semi-arid grasslands provides a ready substrate for N mineralization. However, process rates are likely to be primarily limited by the amount of substrate available as well as water availability and less so by substrate quality or microbial community composition.     

Effects of successive soil freeze-thaw cycles on soil microbial biomass and organic matter decomposition potential of soils

Abstract

Effects of soil freeze-thaw cycles on soil microbial biomass were examined using 8 soil samples collected from various locations, including 4 arable land sites and 2 forest sites in temperate regions and 2 arable land sites in tropical regions. The amounts of soil microbial biomass C and N, determined by the chloroform fumigation and extraction method, significantly decreased by 6 to 40% following four successive soil freeze-thaw cycles (- 13 and 4°C at 12 h-intervals) compared with the unfrozen control (kept at 4°C during the same period of time as that of the freeze-thaw cycles). In other words, it was suggested that 60 to 94% of the soil microorganisms might survive following the successive freeze-thaw cycles. Canonical correlation analysis revealed a significantly positive correlation between the rate of microbial survival and organic matter content of soil (r = 0.948*). Correlation analysis showed that the microbial survival rate was also positively correlated with the pore-space whose size ranged from 9.5 to 6.0 μm (capillary-equivalent-diameter; r = 0.995**), pH(KCI) values (r = 0.925**), EC values (r = 0.855*), and pH (H₂O) values (r = 0.778*), respectively. These results suggested that the soil physicochemical properties regulating the amount of unfrozen water in soil may affect the rate of microbial survival following the soil freeze-thaw cycles. The potential of organic matter decomposition of the soils was examined to estimate the effects of the soil freeze-thaw cycles on the soil processes associated with the soil microbial communities. The soil freeze-thaw cycles led to significant 6% increase in chitin decomposition and 7% decrease in rice straw decomposition (p < 0.05), suggesting that the partial sterilization associated with the soil freeze-thaw cycles might disturb the soil microbial functions.     

Chloroform fumigation and the release of soil nitrogen: A rapid direct extraction method to measure microbial biomass nitrogen in soil

A new “direct extraction” method for measuring soil microbial biomass nitrogen (biomass N) is described. The new method (fumigation-extraction) is based on CHC1₃ fumigation, followed by immediate extraction with 0.5 M K₂SO₄ and measurement of total N released by CHC1₃ in the soil extracts. The amounts of NH₄-N and total N extracted by K₂SO₄ immediately after fumigation increased with fumigation time up to 5 days. Total N released by CHC1₃ after 1 day fumigation (1 day CHC1₃-N) and after 5 days fumigation (5 day CHC1₃-N) were positively correlated with the flush of mineral N (F_N) in 37 soils that had been fumigated, the fumigant removed and the soils incubated for 10 days (fumigation-incubation). The regression equations were 1 day CHC1₃-N = (0.79 ± 0.022) F_N and 5 day CHC1₃-N = (1.01 ± 0.027) F_N, both regressions accounting for 92% of the variance in the data.In field soils previously treated with ¹⁵N-labelled fertilizer, the amounts of labelled N, measured after fumigation-extraction, were very similar to the amounts of labelled N mineralized during fumigation-incubation; both were about 4 times as heavily labelled as the soil N as a whole. These results suggest that fumigation-extraction and fumigation-incubation both measure the same fraction of the soil organic N (probably the cytoplasmic component of the soil microbial biomass) and that measurement of the total N released by CHC1₃ fumigation for 24 h provides a rapid method for measuring biomass N.     

土壤微生物生物氮与植物氮吸收的关系

The contents of the soil microbial biomass nitrogen (SMBN) in the soils sampled from the Loess Plateau of China were determined using chloroform fumigation aerobic incubation method (CFAIM),chloroform fumigation anaerobic incubation method (CFANIM) and chloroform fumigation-extraction method (CFEM). The N taken up by ryegrass on the soils was determined after a galsshouse pot experiment. The flushes of nitrogen (FN) of the soils obtained by the CFAIM and CFANIM were higher than that by the CFEM, and there were significantly positive correlations between the FN obtained by the 3 methods. The N extracted from the fumigated soils by the CFAIM,CFANIM and CFEM were significantly positively correlated with the N uptake by ryegrass. The FN obtained by the 3 methods was also closely positively correlated with the N uptake by ryegrass. The FN obtained by the 3 methods was also closely positively correlated with the plant N uptake. The contributions of the SMBN and mineral N and mineralized N during the incubation period to plant N uptake were evaluated with the multiple regression method. The results showed that the N contained in the soil microbial biomass might play a noticeable role in the N supply of the soils to the plant.     

Significance of microbial biomass for carbon and nitrogen mineralization in soil

C and N mineralization was quantified in an incubation experiment with two samples containing different amounts of microbial biomass. The samples from two layers (0–20, 20–30 cm) of an arable luvisol from loess were fertilized with nitrate, mixed with ¹⁴C-labelled straw and incubated for 52 days at different O₂ levels. Decreasing O₂ concentrations (21, 2, 1 and 0% O₂) in soil conducted a decrease in C and N mineralization. More C and N were mineralized in samples with a higher initial microbial biomass. The differences in microbial biomass were still present at the end of the experiment, but more proliferation was detected in samples with the lower initial microbial biomass, leading to equal ratios between microbial biomass-C and soil organic C in both soils.     

Limitations when quantifying microbial carbon and nitrogen by fumigation‐extraction in rooted soils

Soil microbial C and N (C_mic, N_mic) estimation by the chloroform fumigation‐extraction method is erroneous in densely rooted soils due to CHCl₃‐labile C and N compounds. The effect of a pre‐extraction with 50 mM K₂SO₄ and a pre‐incubation (conditioning at 25 °C for 7 days) on the flush in extractable, CHCl₃‐labile C (C‐flush) and N (N‐flush) was tested with reference to rooting density (0.3—75 mg root dry matter g^—1) in one arable and 3 grassland soils. In the arable soil and in the second horizon (10—20 cm) of a grassland soil, C‐flush values were not affected by the pre‐extraction. However, the pre‐extraction considerably reduced C‐flush values in the top soils of the grassland (above 10 cm). Only about 42 % was found in the pre‐extracted roots and the rest was lost during the pre‐extraction. The estimated concentrations of N_mic decreased due to pre‐extraction of soil samples with low root biomass. Clearly, the concentrations of N_mic were underestimated by introducing the pre‐extraction. Soil pre‐incubation reduced C‐flush values only slightly, whereas N‐flush values were not affected. It can be concluded that (1) CHCl₃‐labile root C and N is partly extracted with K₂SO₄ after pre‐incubation and (2) CHCl₃‐labile C and N removed with the roots during pre‐extraction is partly derived from microbial biomass. Soils with low rooting density (arable soils, grassland soils below approximately 10 cm depth) should therefore be fumigated and extracted without pre‐extraction. In densely rooted soils, fumigation extraction with and without pre‐extraction probably gives estimates for the minimum and maximum of C_mic and N_mic.     

Decomposition de corps microbiens dans des sols fumiges au chloroforme: Effets du type de sol et de microorganisme

Five microbial species (Aspergillus flavus, Trichoderma viride, Streptomyces sp., Arthrobacter sp., Achromobacter liquefaciens) were cultivated in liquid media containing ¹⁴C-labelled glucose. The decomposition of these microorganisms was recorded in four different soils after chloroform fumigation by a technique related to that proposed by Jenkinson and Powlson, to determine the mineralization rate of microbial organic matter (K_c coefficient). Three treatments were used: untreated soil, fumigated soil alone and fumigated soil supplied with ¹⁴C-labelled cells. Total evolved CO₂ and ¹⁴CO₂ were measured after 7 and 14 days at 28°C.The labelled microorganisms enabled the calculation of mineralization rate K_c (K_c = mineralized microbial carbon/supplied microbial carbon). The extent of mineralization of labelled microbial carbon depended on the type of soil and on the microbial species. Statistical analysis of results at 7 days showed that 58% of the variance is taken in account by the soil effect and 32% by the microorganism effect. Between 35 and 49% of the supplied microbial C was mineralized in 7 days according to the soil type and the species of microorganism. Our results confirmed that the average value for K_c = 0.41 is acceptable, but K_c variability according to soil type must be considered.The priming effect on organic C and native microbial biomass mineralization, due to microbial carbon addition was obtained by comparison between the amount of non-labelled CO₂-C produced by fumigated soils with or without added labelled microorganisms: this priming effect was generally negligible.These results indicate that the major portion of the error of microbial biomass measurement comes from the K_c estimation.     

Correlation among microbial biomass s,soil properties,and other biomass nutrients

The soil physicochemical characteristics and amounts of microbial biomass C, N, and S in 19 soils (10 grassland, 2 forest, and 7 arable soils) were investigated to clarify the S status in granitic regosols in Japan, in order to determine the relationships between biomass S and other soil characteristics and to estimate approximately the annual Sand N flux through the microbial biomass. Across the sites, the amount of biomass C ranged from 46 to 1,054, biomass N from 6 to 158, and biomass S from 0.81 to 13.44 mg kg_-1 soil with mean values of 438.8, 85.8, and 6.15 mg kg_-1 soil, respectively. Microbial biomass Nand S accounted for 3.4–7.7% and 1.1–4.0% of soil total Nand S, respectively. The biomass C: N, C : S, and N : S ratios varied considerably across the sites and ranged from 3.0–10.4, 32.5–87.7, and 5.0–18.8, respectively. Microbial biomass S was linearly related to biomass C and biomass N. The regression accounted for 96.6% for biomass C and 92.9% for biomass N of the variance in the data. The amounts of biomass C, N, and S were positively correlated with a number of soil properties, particularly with the contents of organic C, total N, SO₄-S, and electrical conductivity and among themselves. The soil properties, in various linear combinations showed a variability of 84–97% in the biomass nutrients. Stepwise multiple regression indicated that biomass C, N, and S were also dependent on SO₄-S as a second factor of significance which could limit microbial growth under the conditions prevailing at the study sites. Annual flux of Nand S was estimated through the biomass using the turnover rates of 0.67 for Nand 0.70 for S to be approximately 129 kg Nand 9.7 kg S ha^-1 y^-l, respectively, and was almost two times higher in grassland than arable soils.     

Adenosine triphosphate and microbial biomass in soil

Two methods for measuring adenosine 5'-triphosphate (ATP) in soil were compared, one based on extraction with NaHCO₃-CHCl₃ and thel other on extraction by a trichloracetic acid-phosphate-paraquat reagent. Recoveries of added ATP were greater with the NaHCO₃-CHCl₃ reagent but the extraction of “native” soil ATP by NaHCO₃-CHCl₃ was only about a third of that by TCA-phosphate-paraquat.Microbial biomass C and ATP were measured in 8 contrasting English soils, using the fumigation method to measure biomass C and the TCA-phosphate-paraquat method to measure ATP. Except in one acid woodland soil, the ratio (ATP content of the soil)/(biomass C content of the soil) was relatively constant, with a mean of 7.3 mg ATP g^?1 biomass C for the different soils. This value is very similar to that obtained earlier in a range of 11 grassland and arable soils from Australia. Taking the English and Australian grassland and arable soils together, there is a close (r = 0.975) linear relationship between ATP and microbial biomass C that holds over a wide range of soils and climates. From this relationship, the soil biomass contains 7.25 mg ATP g^?1 biomass C, equivalent to an ATP-to-C ratio of 138, or to 6.04 μmoles ATP g^?1 dry biomass.The acid woodland soil (pH 3.9) contained much less biomass C, as measured by the fumigation method, than would have been expected from this relationship. This, and other evidence, suggests that the fumigation method for measuring microbial biomass C breaks down in strongly acid soils.The ATP content of the biomass did not depend on the P status of the soil, as indicated by NaHCO₃-extractable P.     

Biological and chemical properties of arable soils affected by long-term organic and inorganic fertilizer applications

 Using soils from field plots in four different arable crop experiments that have received combinations of manure, lime and inorganic N, P and K for up to 20 years, the effects of these fertilizers on soil chemical properties and estimates of soil microbial community size and activity were studied. The soil pH was increased or unaffected by the addition of organic manure plus inorganic fertilizers applied in conjunction with lime, but decreased in the absence of liming. The soil C and N contents were greater for all fertilized treatments compared to the control, yet in all cases the soil samples from fertilized plots had smaller C:N ratios than soil from the unfertilized plots. The soil concentrations of all the other inorganic nutrients measured were greater following fertilizer applications compared with the unfertilized plots, and this effect was most marked for P and K in soils from plots that had received the largest amounts of these nutrients as fertilizers. Both biomass C determined by chloroform fumigation and glucose-induced respiration tended to increase as a result of manure and inorganic fertilizer applications, although soils which received the largest additions of inorganic fertilizers in the absence of lime contained less biomass C than those to which lime had been added. Dehydrogenase activity was lower in soils that had received the largest amounts of fertilizers, and was further decreased in the absence of lime. This suggests that dehydrogenase activity was highly sensitive to the inhibitory effects associated with large fertilizer additions. Potential denitrification and anaerobic respiration determined in one soil were increased by fertilizer application but, as with both the microbial biomass and dehydrogenase activity, there were significant reductions in both N₂O and CO₂ production in soils which received the largest additions of inorganic fertilizers in the absence of lime. In contrast, the size of the denitrifying component of the soil microbial community, as indicated by denitrifying enzyme activity, was unaffected by the absence of lime at the largest rate of inorganic fertilizer applications. The results indicated differences in the composition or function of microbial communities in the soils in response to long-term organic and inorganic fertilization, especially when the soils were not limited. Received: 10 March 1998     

The impact of a low humus level in arable soils on microbial properties, soil organic matter quality and crop yield

 In arable soils in Schleswig-Holstein (Northwest Germany) nearly 30% of the total organic C (TOC) stored in former times in the soil has been mineralized in the last 20 years. Microbial biomass, enzyme activities and the soil organic matter (SOM) composition were investigated in order to elucidate if a low TOC level affects microbial parameters, SOM quality and crop yield. Microbial biomass C (C_mic) and enzyme activities decreased in soils with a low TOC level compared to soils with a typical TOC level. The decrease in the C_mic/TOC ratio suggested low-level, steady-state microbial activity. The SOM quality changed with respect to an enrichment of initial litter compounds in the top soil layers with a low TOC level. Recent management of the soils had not maintained a desirable level of humic compounds. However, we found no significant decrease in crop yield. We suggest that microbial biomass and dehydrogenase and alkaline phosphatase activities are not necessarily indicators of soil fertility in soils with a high fertilization level without forage production and manure application. Received: 12 December 1997     

Mineralization and changes in microbial biomass in water-saturated soil amended with some tropical plant residues

An incubation experiment was conducted in the laboratory at 25 and 35°C during 56 d to analyze the mineralization patterns and the changes in microbial biomass in water-saturated soils amended with 6 types of organic materials (O.M.) including residues from 4 tropical plants. C and N mineralization in amended and non-amended soils was influenced by the temperature, A significantly positive correlation was observed between C mineralization and the amount of hexoses of the amended O.M. regardless of the period of incubation. A negative relationship between the N mineralized from amended O.M. and C/N ratios and the amounts of cellulose plus hemicellulose of the added O.M. was observed during the period of maximum mineralization on the 49th day at 25°C. The critical C/N ratio value for N mineralization and immobilization was observed in dhaincha (15.7) and cowpea (22.0).

The pattern of changes in microbial biomass C and N was almost similar at both 25 and 35°C. The amount of biomass C and N gradually increased up to a period of 28 to 42 d and thereafter decreased gradually. A significant increase in the amount of biomass C and N was observed in O.M. amended soils over the control. The contribution of rice straw and cowpea to biomass C formation was significantly larger than that of other O.M. at the end of incubation (56 d). In the case of biomass N, the contribution of rice straw was significantly larger than that of other O.M. except for azolla at 25°C and cowpea at 35°C. The significant contribution of rice straw and cowpea to biomass formation suggests that microbial biomass remaining in soil on the 56th day had been influenced by the combination of a larger amount of cellulose plus hemicellulose and higher C/N ratio in plant residues.     

The effect of warming on the vulnerability of subducted organic carbon in arctic soils

Arctic permafrost soils contain large stocks of organic carbon (OC). Extensive cryogenic processes in these soils cause subduction of a significant part of OC-rich topsoil down into mineral soil through the process of cryoturbation. Currently, one-fourth of total permafrost OC is stored in subducted organic horizons. Predicted climate change is believed to reduce the amount of OC in permafrost soils as rising temperatures will increase decomposition of OC by soil microorganisms. To estimate the sensitivity of OC decomposition to soil temperature and oxygen levels we performed a 4-month incubation experiment in which we manipulated temperature (4–20 °C) and oxygen level of topsoil organic, subducted organic and mineral soil horizons. Carbon loss (C_LOSS) was monitored and its potential biotic and abiotic drivers, including concentrations of available nutrients, microbial activity, biomass and stoichiometry, and extracellular oxidative and hydrolytic enzyme pools, were measured. We found that independently of the incubation temperature, C_LOSS from subducted organic and mineral soil horizons was one to two orders of magnitude lower than in the organic topsoil horizon, both under aerobic and anaerobic conditions. This corresponds to the microbial biomass being lower by one to two orders of magnitude. We argue that enzymatic degradation of autochthonous subducted OC does not provide sufficient amounts of carbon and nutrients to sustain greater microbial biomass. The resident microbial biomass relies on allochthonous fluxes of nutrients, enzymes and carbon from the OC-rich topsoil. This results in a “negative priming effect”, which protects autochthonous subducted OC from decomposition at present. The vulnerability of subducted organic carbon in cryoturbated arctic soils under future climate conditions will largely depend on the amount of allochthonous carbon and nutrient fluxes from the topsoil.     

Impact of black carbon addition to soil on the determination of soil microbial biomass by fumigation extraction

The efficiency of the fumigation extraction method on the determination of soil microbial biomass carbon and ninhydrin-N was tested in three different soils (UK grassland, UK arable, Chinese arable) amended with black carbon (biochar or activated charcoal). Addition of activated charcoal to soil resulted in a significant decrease in K₂SO₄ extractable carbon and ninhydrin-N in all three soils, whereas the addition of biochar generally did not. A lower concentration of the extraction reagent (0.05 M vs. 0.5 M K₂SO₄) resulted in a significantly lower extraction efficiency in the grassland soil. The extraction efficiency of organic carbon was more affected by black carbon than that of ninhydrin-N, which resulted in a decreased biomass C/ninhydrin-N ratio. The impact of black carbon on the extraction efficiency of soil microbial biomass depended on the type of black carbon, on the concentration of the extraction medium and on soil type.     

Effect of land degradation on soil microbial biomass in a hilly area of south Sumatra,Indonesia

We investigated the impact of land-use changes on the soil biomass at several soil sites in Indonesia under different types of land-use (primary forest, secondary forest, coffee plantation, traditional orchard, and deforested area), located within a small geographical area with similar parent material and climatic conditions. Various parameters of soil microbial biomass (biomass C, biomass N, content of anthrone-reactive carbohydrate carbon, and soil ergosterol content) were examined. Our results suggested that the removal of the natural plant cover did not cause any appreciable decrease in the amount of microbial biomass; on the contrary it led to a short-time increase in the amount of microbial biomass which may be due to the availability of readily decomposable dead roots and higher sensitivity to the decomposition of residual litter in recently deforested soils. However, the amount of microbial biomass tended to decrease in proportion to the duration of the land history in coffee plantation soils. This may be ascribed to the effect of the loss of available substrates associated with soil erosion in the long term. Lower ergosterol contents in recently deforested areas reflected a reduction in the amount of fungal biomass which may be due to the destruction of the hyphal network by the slash and burn practice. On the other hand, the higher soil ergosterol content at the sites under bush regrowth indicated that microbial biomass was able to recover rapidly with the occurrence of a new plant cover.