Combining ability for nodulation in common bean (Phaseolus vulgaris L.) genotypes from Andean and Middle American gene pools

Ten F₁'s obtained from crosses among five common bean genotypes of Andean (WAF 15, Mineiro Precoce and Batatinha) and Middle American (BAT 304 and Ouro) gene pools were assessed for their combining abilities for root nodulation with Rhizobium tropici strain CIAT 899. The plants were grown under controlled conditions and evaluated for number of nodules per plant (NN), nodule dry weight (NDW), mean nodule weight (MNW) and plant fresh weight (PFW). The subdivision of the treatment effects on the general (GCA) and specific combining effects (SCA) were performed according to Griffing's diallel analysis method 2, model 1. The analyses of variance and estimates of quadratic components showed that non-additive gene effects were more important in the expression of NN and PFW, whereas additive gene effect was predominant for NDW and MNW. A close association was observed between high number of nodules and GCA. Generally, crosses involving parents of different gene pools yielded hybrids with high positive estimates of SCA for all assessed traits. The genotypes of Andean origin WAF 15 and Mineiro Precoce are the most promising parents for breeding programs to increase NN and NDW in common beans. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic control of low temperature tolerance in germination of the common bean (Phaseolus vulgaris L.)

Summary Cultivars tolerant to low temperature during the germination and emergence stages and carriers of the grain quality standards demanded by consumers are needed to increase the success of irrigated common bean in Southern Minas Gerais State. To study the genetic mechanisms controlling these traits and assess the possibility of generating the desirable materials, a diallel cross involving ten cultivars including introductions and pure lines from the breeding program of ESAL was carried out. Speed of germination of the F₂ generation from the crosses was assessed under laboratory conditions at 12°C. The diallel analysis was carried out using Griffing's method IV (1956) and predictions of the cross potential were made by the methodology developed by Jinks & Pooni (1986). The results indicated that the parents differed in germination speed at low temperatures with Small White, A-488 and Rio Vermelho being the most tolerant and Carioca, ESAL 591 the most sensitive. No effect of the reciprocal crosses was observed either for germination percentage or germination speed. The parents A-488, Small White and Rio Vermelho showed the greatest general combining ability. Additive genetic effects predominated for both traits. Our results suggest that cold tolerance can be bred successfully into commercially acceptable cultivars.     

The Role of epistasis in controlling seed yield and other agronomic traits in an Andean × Mesoamerican cross of common bean (Phaseolus vulgaris L.)

Epistasis is a pervasive phenomenon in biology. Nevertheless, attempts at identifying epistatic interactions with quantitative trait loci (QTL) analyses have yielded inconsistent results. In this study, we attempt to determine the genetic control of outbreeding depression and the possible role of epistasis following a wide cross in common bean (Phaseolus vulgaris L.). A recombinant inbred population, derived from a cross between Andean and Mesoamerican common bean cultivars, was evaluated in two markedly contrasting environments. A low-density linkage map based on AFLPs was used to locate QTLs for the number of days to maturity, average daily biomass and seed yield accumulation, and harvest index. Both independently acting and digenic epistatic QTLs of similar magnitude were identified. A majority of the loci involved in these epistatic interactions did not have an independent effect. Although we did find evidence for strong epistatic control of the traits investigated, we also found, in contrast to other recent studies, that there was no evidence for a bias toward coadapted gene complexes at the level of digenic epistasis. We discuss these results in relation to the role of epistasis in the evolutionary history of the species and methodological difficulties in detecting epistasis. This revised version was published online in July 2006 with corrections to the Cover Date.     

Breeding the common bean (Phaseolus vulgaris L.) for resistance to bean common mosaic virus: alternatives to backcrossing

A series of field experiments was undertaken in order to determine whether resistance to bean common mosaic virus (BCMV) could be incorporated into genotypes of the common bean (Phaseolus vulgaris L.) suitable for cultivation in Zimbabwe without recourse to backcrossing. Six inbred genotypes carrying the resistance-conferring alleles at the loci I and Bc-3 were crossed with five locally-adapted inbred genotypes. The first experiment comprised F₃ progeny rows, each derived from a single unselected F₂ plant, the second, F₃ bulks selected for resistance, and the third, a comparison of selected and unselected F₂-derived F₄ lines. The number of days to flowering and to maturity, the incidence of mosaic and necrosis symptoms, seed yield and seed size were recorded. There was evidence that late flowering and maturity were associated with BCMV resistance in some crosses, though not strongly enough to present an obstacle to plant breeding. The incidence of virus symptoms and seed yield were influenced by genetic factors additional to the major resistance genes, and variation in seed yield was present not only between bulk populations of crosses, but also between single-row plots of lines within crosses. This indicates that early-generation selection for yield in the presence of BCMV, even among progeny selected for BCMV-resistace, is likely to be effective. However, the variation in yield among F₄ lines was least in the highest-yielding crosses, which may represent a limit to successful selection for yield. Seed size was partly under additive genetic control, but there was also evidence of non-allelic interactions. There was no association between large seed size, preferred by consumers, and susceptibility to BCMV in the progeny, indicating that the association between these characters in the parent lines is fortuitous and will not present an obstacle to plant breeding. It is noted that a considerable amount of useful genetic information can be obtained without recourse to elaborate crossing schemes, provided that unselected progeny are included in experiments as controls. The evidence presented indicates that resistance to BCMV can be combined with appropriate values of maturity date, yield and seed size without the need for backcrossing.     

Patterns of genetic diversity in landraces of common bean (Phaseolus vulgaris L.) from Galicia

Knowledge of patterns of genetic diversity among existing cultivars helps to broaden the genetic base of new cultivars and maximizes the use of available germplasm resources. This study examined the organization of diversity for morphological traits in 66 landraces of cultivated common bean (Phaseolus vulgaris) from Galicia and its relationship with phaseolin seed protein diversity. Data on growth habit, seed and pod traits obtained from field evaluations at two locations during the 1989—91 cropping seasons were subjected to multivariate statistical analysis. Cluster analysis based on 14 quantitative variables and five qualitative variables identified 11 groups. The landraces were also characterized by phaseolin electrophoresis. The results allowed separation of these landraces into Middle and Andean American groups, which could be further divided into at least eight groups within the Andean American cultivars and three within the Mesoamerican cultivars. These groups in turn corresponded to the previously described races Nueva Granada and Peru of South American origin, and races Durango, Jalisco and Mesoamerica from the Middle American domestication centre. These results confirm the existence of two major groups of germplasm in the cultivated common bean landraces from Galicia, Mesoamerican vs. Andean American.     

A new gene conferring resistance to anthracnose in Andean common bean (Phaseolus vulgaris L.) cultivar ‘Jalo Vermelho’

‘Jalo Vermelho’ is a large seeded Andean landrace of common bean (Phaseolus vulgaris L.) that constitutes an important source of anthracnose resistance, disease caused by Colletotrichum lindemuthianum. This landrace has different resistance spectrum, when compared with cultivars of Andean origin, indicating the presence of an anthracnose‐resistant gene different from Co‐1 locus. This anthracnose resistance was characterized by inheritance and allelism tests were carried out on the following genes: Co‐1, Co‐1², Co‐1³, Co‐1⁵, Co‐2, Co‐3, Co‐4, Co‐5, Co‐6, Co‐7, Co‐9, Co‐10, Co‐11 and Co‐13. Resistance to races 23, 55, 89 and 453 in ‘Jalo Vermelho’ was conditioned by a single dominant gene. Allelism tests in F₂ populations demonstrated that ‘Jalo Vermelho’ carries a dominant gene located at a distinct locus, differing from previously characterized genes. Based on its independence from previously described loci, the authors propose that the ‘Jalo Vermelho’s gene should be named Co‐12. This new gene is a valuable source of resistance to anthracnose which can be transferred to commercial cultivars to enhance the effectiveness of resistance gene pyramiding in bean breeding programmes.     

Variation of the storage protein phaseolin in common bean (Phaseolus vulgaris L.) from the Mediterranean area

Summary Variation of phaseolin, the major storage protein in Phaseolus vulgaris L., was analysed in seeds of a germplasm collection from the Mediterranean area. Results showed a number of subvariants differing from the reference patterns for the presence, absence or faintness of single polypeptides. Maximum concentration of variation was found in the Cyprus material. Sources and causes of variation are discussed.     

Inheritance of temperature sensitivity of the photoperiod response in common bean (Phaseolus vulgaris L.)

Summary Photoperiod response of flowering in common bean (Phaseolus vulgaris L.) is thought to be controlled by the genes Ppd and Hr. However, cultivars also vary in the degree that cooler temperatures reduces their sensitivity to photoperiod. To examine the inheritance of this temperature sensitivity, crosses of cvs. Gordo x de Celaya and Flor de Mayo × Rojo 70 were evaluated at two sites differing in mean temperature and using 12.5-h natural photoperiod or 18-h artificially extended photoperiod. Under 18-h photoperiod at the warmer site, Palmira, no plants of the parents or of the F₂ populations flowered, confirming that the parents were sensitive to photoperiod. Under 12.5-h photoperiod at the cooler site, Popayan, the parents for each cross flowered at similar dates and no segregation for days to flower was observed. However, under 18-h photoperiod, de Celaya and Rojo 70 and the F₁ populations did not flower within 100 days after planting, while the F₂ and F₃ populations showed segregation that was consistent with single gene inheritance, late flowering being dominant. Late flowering at Popayan under 18-h photoperiod indicates a lack of temperature sensitivity, so temperature insensitivity of the photoperiod response was dominant to sensitivity. The name Tip, for temperature insensitivity of photoperiod response, is proposed for this gene, with the recessive form of this gene conditioning earlier flowering at cooler temperatures with long daylengths. It is recognized that the observed segregation patterns could represent the effect of multiple alleles at the Ppd or Hr loci, and studies are proposed to test this possibility with molecular markers and recombinant inbred lines.     

Effect of water deficit on morphoagronomic traits of black common bean genotypes (Phaseolus vulgaris L.) with contrasting drought tolerance

Brazil is the world's largest producer of common beans (Phaseolus vulgaris L.). Drought stress harms the morphological and agronomic traits of beans. This study evaluates the reaction to water deficit in five genotypes of black beans. The experiment was conducted in the IDR-IAPAR-EMATER in Londrina-PR, Brazil. A split-plot design was used, with three replications. The genotypes were included in the subplots and the treatments with or without water deficit in the plots. Water deficit was induced on the pre-flowering stage and maintained for 20 days in the plots submitted to drought stress. For the growth analysis, plants were collected at 35, 54 and 70 days after emergence. At the stage of physiological ripeness, several morphological and yield traits were evaluated. The genotypes IPR Uirapuru and BRS Esplendor can be considered tolerant and used as a tolerant source to water deficit in common bean germplasm banks. The line LP 08-90 has morphological and agronomic adaptations efficient to overcome water deficit's effects, presenting a higher grain yield in both crop conditions, which indicates the success of black beans breeding to deal with water deficit.     

Origin,diversity and utilization of the Cuban germplasm of common bean (Phaseolus vulgaris L.)

Summary Wheat root characters which influence vital plant processes have scarcely been explored for their genetic control. This study was conducted to i) examine the diversity of root traits and associated shoot traits in spring wheat (Triticum aestivum L.) cultivars; ii) study the nature of genetic control of selected traits; and iii) examine associations among root and shoot traits. Three experiments were conducted in the greenhouse with plants grown in the vermiculite medium in clear plastic tubes. In the first experiment, 42 spring wheat cultivars were grown for three weeks and measurements were taken on root length, leaf length, root number, leaf number, root dry weight, and top dry weight. In the second study, 15F₁'s originating from a partial diallel mating of six cultivars along with the parents were evaluated for 4 weeks. The data on root length, leaf length, and root number were subjected to diallel analysis according to Griffing's method 4, fixed model. A third experiment consisted of studying 2 F₂ populations with 141 plants per population. In the first study the 42 cultivars exhibited a wide range of variation for all six traits. Diallel analysis revealed significant effects of both general combining ability (GCA) and specific combining ability (SCA) for root length, leaf length, and root number. Parents with high GCA estimates were identified. Significant positive correlation coefficients were found among root and shoot traits. Analysis of F₂'s for root length indicated quantitative nature of inheritance of root length.     

Interactions between wild and cultivated carrots (Daucus carota L.) in the Netherlands

Summary An investigation was made into the causes why bolters occur in carrot cultivation. In the first year of cultivation blooming plants are the result of a gene flow from wild to cultivated carrots. Hybridization may occur in areas where cultivated carrots are grown for seed production. Apart from bolters producing inedible roots such hybridization also causes a decline in quality of cultivated carrots in general. Small changes in morphological and phenological characteristics of the wild carrot are due to introgression from the cultivated carrot.     

Phenotypic variation in a core collection of common bean (Phaseolus vulgaris L.) in the Netherlands

Forty accessions, forming a core collection of mainly bush type of the common bean (Phaseolus vulgaris L.) germplasm in the Netherlands, were evaluated for 14 qualitative and quantitative traits at the Agricultural University, Wageningen (WAU), the Netherlands in 1992. These and an additional 117 Dutch accessions, mainly collected in private home gardens, were also evaluated for phaseolin seed protein pattern, and morphological and agronomic traits at the International Center for Tropical Agriculture (CIAT, Spanish acronym), Cali, Columbia between 1987 and 1997. Multivariate and principal component analyses at both WAU and CIAT indicated existence of one large group with no discernable patterns among Dutch common bean collections of landraces, garden forms and cultivars. However, when phaseolin, an evolutionary, biochemical marker, was used as an initial classification criterion followed by use of morphological markers, the two major gene pools; Andean and Middle American with two races in each (Chile and Nueva Granada in Andean, and Durango and Mesoamerica in Middle American) were identified. The Andean gene pool was predominant (136 of 157 accessions), especially the race Nueva Granada (126 accessions) characterized by the bush determinate growth habit type I and T phaseolin. The new core collection comprised 31 accessions. Bean races Chile, Durango, and Mesoamerica were represented by 10, 7, and 14 accessions, respectively. Of the 9 French or snap bean accessions six possessed characteristics of race Mesoamerica and three belonged to Durango race. Occurrence of these and a large number of other recombinants strongly suggested considerable hybridization and gene exchange between Andean and Middle American gene pools, thus blurring the natural boundaries and forming a large single group of common bean germplasm in the Netherlands. The inter-gene-pool recombinants of both dry and French beans should be of special interest to breeders for use as bridging-parents for development of broad-based populations. This revised version was published online in July 2006 with corrections to the Cover Date.     

Variation of seed storage proteins in landraces of common bean (Phaseolus vulgaris L.) from Basilicata,Southern Italy

Summary Twenty landraces of common bean (Phaseolus vulgaris L.) from Sarconi and Rotonda two locations of Basilicata, a Southern Italy region, were screened for variation in seed storage proteins (phaseolin and phytohemagglutinin) by polyacrylamide gel electrophoresis (SDS/PAGE and IEF-SDS/PAGE). No variation of the main seed protein fractions was observed within each landrace. Phaseolin patterns type C and T were exhibited from the landraces; the type C resulted predominant with a frequency of 70%. Only the C type was observed for the landraces of Rotonda, T and C for those from Sarconi. Two variants were observed for the phytohemagglutinin by SDS-PAGE, one was common to eighteen landraces. However, these variants submitted to IEF-SDS/PAGE resulted similar to the type T_G2described by Brown. The importance to safeguard these landraces is stressed by the observation that the more spread commercial cultivars of common bean growing in Southern-Italy had a T phaseolin pattern. A reduction of C type diffusion could produce the loss a typical trait of common bean in Mediterranean regions.     

Segregation for performance in recombinant inbred populations resulting from inter-gene pool crosses of common bean ( Phaseolus vulgaris L.)

The germplasm of cultivated common bean exhibits a lower level of genetic diversity within each geographical gene pools (Mesoamerican and Andean) compared to that of the respective wild ancestors. Crosses between these two gene pools potentially provide a source of additional genetic diversity but their progenies have been characterized by phenotypic abnormalities and reduced productivity. In order to gain additional insights into this problem, we examined the segregation for performance in two recombinant inbred populations (RIPs) resulting from Mesoamerican × Andean crosses in three contrasting environments and two years. The two RIPs – ‘California Dark Red Kidney’ (of Andean origin) × ‘Yolano’ (Mesoamerican), n = 150, and A55 (Mesoamerican) × G122 (Andean), n = 67 – were grown in replicated field tests to assess the agronomic performance of each recombinant inbred line. Both populations exhibited, on average, greater days to maturity (DTM), lower biomass growth rate (above-ground dry weight/DTM), lower economic growth rate (seed yield/DTM), and lesser harvest index. In contrast with the conclusions of earlier experiments, there was no evidence from the field trials for a genetic association (due to linkage or pleiotropy) between seed weight and economic growth rate, but there may be a genetic association between seed weight and life cycle length. We compare the results of these studies with earlier experiments on inter-gene pool recombinant populations of common beans and relate our observations of diminished performance to models of speciation mechanisms. This revised version was published online in July 2006 with corrections to the Cover Date.     

Inheritance of root traits and phosphorus uptake in common bean (Phaseolus vulgaris L.) under limited soil phosphorus supply

Heterosis is an important way to improve yield and quality for many crops. Hybrid rice and hybrid maize contributed to enhanced productivity which is essential to supply enough food for the increasing world population. The success of hybrid rice in China has led to a continuous interest in hybrid wheat, even when most research on hybrid wheat has been discontinued in other countries for various reasons including low heterosis and high seed production costs. The Timopheevii cytoplasmic male sterile system is ideal for producing hybrid wheat seeds when fertility restoration lines with strong fertility restoration ability are available. To develop PCR-based molecular markers for use in marker-assisted selection of fertility restorer lines, two F₂ populations derived from crosses R18/ND36 and R9034/ND36 were used to map fertility restoration genes in the two elite fertility restorer lines (R-lines) R18 and R9034. Over 678 SSR markers were analyzed, and markers closely linked to fertility restoration genes were identified. Using SSR markers, a major fertility restoration gene, Rf3, was located on the 1B chromosome in both populations. This gene was partially dominant in conferring fertility restoration in the two restorer lines. SSR markers Xbarc207, Xgwm131, and Xbarc61 are close to this gene. These markers may be useful in marker-assisted selection of new restorer lines with T. timopheevii cytoplasm. Two minor QTL conferring fertility restoration were also identified on chromosomes 5A (in R18) and 7D (in R9034) in two R-lines.     

Development of common bean (Phaseolus vulgaris L.) lines resistant to the bean pod weevil,Apion godmani Wagner,in Central America

Summary The larva of the bean pod weevil (BPW), Apion godmani Wagner (Coleoptera: Curculionidae), causes serious yield losses in common bean (Phaseolus vulgaris L.) in Mexico and Central America, by consuming the seed as it develops in the immature pod. Resistance to the BPW was identified in bean germplasm of highland Mexican origin, and these sources of resistance were incorporated into a pedigree breeding program to recover locally adapted lines resistant to Bean Common Mosaic Virus and BPW, with commercial grain for Guatemala, Honduras and El Salvador. These lines yielded as well as or better than local cultivars in the absence of the insect, and better than local cultivars when the BPW was present. Resistance appeared to be governed by several genes, and was stable across geographic areas, seasons and planting systems.     

Sources of resistance to angular leaf spot (Phaeoisariopsis griseola) in common bean core collection, wild Phaseolus vulgaris and secondary gene pool

Angular leaf spot (ALS) is one of the most devastating diseases of common bean (Phaseolus vulgaris L.) in tropical and subtropical countries. The causal fungus, Phaeoisariopsis griseola(Sacc.) Ferr. is highly variable and a diverse source of resistance genes is required to manage this disease. We evaluated a common bean core collection,primary and secondary gene pools and lines derived from inter-specific crosses of P. vulgaris and P. coccineus or P. polyanthus (secondary gene pool) for resistance to angular leaf spot. Of the 1441 accessiones in the core collection, only 2.2% were resistant to both Andean and Mesoamerican races of P. griseola, 28% were resistant only to Andean and 9% to Mesoamerican races. Of the 32 resistant accessions, 68%originated from Bolivia, Colombia,Guatemala and Mexico. More accessions from these countries should be examined for P. griseola reaction. Very few wild P. vulgaris accessions (4%), were resistant to ALS. In contrast, high levels of resistance (62%) were found in the secondary gene pool. Among the 1010 lines from inter-specific crosses, 109 lines were highly resistant. These genotypes from the primary and secondary common bean gene pools resistant to Andean and Mesoamerican races of P. griseola offer a potential for developing broad and durable ALS resistance. This revised version was published online in August 2006 with corrections to the Cover Date.     

Chloroplast-DNA variation in the wild and cultivated olives (Olea europaea L.) of Morocco

The male sterile plants that segregated in a BC₅F₂ of `C. sericeus × C. cajan var. TT-5' population were maintained by sib mating. The male sterile plants were crossed with ICPL-85012.Approximately 50% of the F₁ plants were sterile. F₂ plants derived from the fertile F₁ plants did not segregate for male sterility. The reciprocal hybrid i.e. ICPL-85012 × Fertile derivatives from C. sericeus × TT-5, did not express male sterility. However, among the 12 F₂ plant to row progenies, two segregated 25% male sterile plants and remaining 10 did not segregate. The segregation pattern in subsequent progenies revealed that the sterility was under control of a single recessive allele. Studies on the backcross and their BC₁F₂ and BC₁F₃progenies revealed another sterility gene which was found to be dominant in inheritance. This paper shows that what was thought to be cytoplasmic male sterility from C. sericeus cytoplasm is actually a single dominant gene possibly acting in concert with a single recessive gene to mimic cytoplasmic male sterility. This revised version was published online in July 2006 with corrections to the Cover Date.     

Inter simple sequence repeat (ISSR) markers as a tool for the assessment of both genetic diversity and gene pool origin in common bean (Phaseolus vulgaris L.)

In this study, we report the use of ISSR to assess genetic diversity and to determine the relationships among ten cultivars of common bean developed in Argentina and three materials from France. ISSR markers resolved two major groups corresponding to the Andean and Mesoamerican gene pools of common bean. We compared the results of previous analysis, performed with RAPD markers (Galván et al., 2001), with the results generated by means of ISSR. It appears that ISSR are better tools than RAPDs to identify beans by gene pool of origin though they did not revealed as many differences between individuals as RAPDs. This revised version was published online in July 2006 with corrections to the Cover Date.