基于小麦白粉病菌rDNA ITS序列的PCR分子检测

 Wheat powdery mildew(Blumeria graminis f.sp.tritici) is the one of main wheat diseases in China.Based on the internal transcribed spacer(ITS) sequences of ribosome of B.graminis f.sp.tritici,three molecular primer pairs(F1/R,F2/R and F3/R) were designed to detect the fungal pathogen of wheat powdery mildew.The species specificity of these primers was confirmed.F1/R was demonstrated a higher sensitivity than the other two primer pairs,and could detect as low as 1 pg DNA of B.graminis f.sp.tritici.Furthermore,F1/R primer pair was used to detect the pathogen DNA extracted from wheat leaves showing chlorosis and typical symptoms of powdery mildew caused by artificial inoculation with B.graminis f.sp.tritici.The preliminary results demonstrated the usefulness of this primer pair and its potential applications in efficient detection of wheat powdery mildew pathogen from leaves with latent infections at early growth stages of wheat.     

土壤中烟草根黑腐病菌的实时定量PCR检测技术研究

 Thielaviopsis basicola is a soil-borne plant pathogen which causes root rot disease in tobacco plants. Detection and monitoring of T. basicolain soil is of great significance to control this disease. Based on the differences in internal transcribed spacer (ITS) sequences of T. basicola and other fungal pathogens, a specific primer pair Tb1/Tb2 for T. basicolawas developed. The results showed that the primer pair gave a single amplicon of 330 bp from T. basicola and revealed no undesirable cross-reaction with other seven soil-borne pathogen isolates and three tobacco rhizosphere dominant fungi isolates. With a series of 10-fold genomic DNA dilutions of T. basicola, the detection limit of 1 pg/μL in conventional PCRand100 fg/μL in real-time quantitative PCR was achieved. With DNA from the soil inoculated with different numbers of T. basicola conidia, the detection limit was 10 conidia per reaction in conventional PCR and 0.4 conidia per reaction in real-time quantitative PCR.     

小麦-滨麦易位系M8657-1抗条锈病基因遗传分析和分子标记

 M8657-1, one of the wheat translocation lines derived from Leymus mollis Trin. Hara, is possessed of effective resistance at all stages to Su-ll and other dominant races of Puccinia striiformis f. sp. tritici in China. Seedlings of the parents, F₁, and F₂ progeny derived from the cross of M8657-1 (resistant) Mingxian169 (susceptible) were inoculated with Su-ll in greenhouse to identify and map the probable new stripe rust resistance gene. The results suggested that the stripe rust resistance in M8657-1 was conferred by a pair of recessive genes. Simple sequence repeat (SSR) technique was used to detect molecular marker associated with the resistance gene:208 pairs of wheat SSR primers were used to screen the two parents, as well as resistant and susceptible bulks and then three SSR markers were selected for genotyping the F₂ population. The geue, temporarily designated as YrLml, was found to be located on the chromosome 7DL and flanked by three SSR markers GDM67, WMC150 and WMC671, with the genetic distance of 5.0, 9.7 and 11.8cM, respectively.     

江西甘蔗花叶病病原的分子鉴定

 Sugarcane mosaic disease, caused by Sugarcane mosaic virus (SCMV), Sorghum mosaic virus (SrMV), Maize dwarf mosaic virus (MDMV) or Johnsongrass mosaic virus (JGMV) in Potyvirus, is one of the most important viral diseases of sugarcane. In the study, four primer pairs specific to SCMV, SrMV, MDMV and JGMV, respectively, were designed and used to detect 29 sugarcane leaf mosaic samples collected from 9 locations in Jiangxi province. The representative RT-PCR products were sequenced. The results showed that 22 samples were infected by SCMV, three by SrMV, and four were mix-infected by SCMV and SrMV. MDMV or JGMV were not identified in all samples. The result indicates that SCMV is the major pathogen of sugarcane mosaic disease in Jiangxi province, and SrMV is also a pathogen for the disease.     

安徽省烟草黑胫病菌的交配型及其地理分布研究

 Total 69 isolates of Phytophthora nicotianae var. nicotianae were isolated and identified from tobacco black shank samples collected from different areas of Anhui province, and mating types of the oomycete were investigated by the method of partnership culture in vitro on L-tryptophan medium with β-sitosterol. The results showed that A2 mating type was the predominant in isolates of P. nicotianae var. nicotianae, next was A₀ mating type, A₁ and other mating types were not observed. It was suggested that sexual reproduction of P. nicotianae var. nicotianae might not take place frequently, and Anhui province might not be the original center of P. nicotianae var. nicotianae. The results indicated further that mating type geographical distribution of P. nicotianae var. nicotianae in Anhui province was in line with that in China. In addition, the significance of the test results and the possible reason for A₁ mating type being absent were discussed.     

分子标记辅助选择小麦抗白粉病兼抗赤霉病聚合体

 Sumai 3, a wheat variety resistant to Fusarium head blight(FHB), was crossed with Neimai 9, a commercial wheat cultivar with the resistance to powdery mildew.The SCAR(sequence characterized amplified region) markers of powdery mildew resistance gene Pm21 and four SSR(simple sequence repeats)markers flanking the major FHB resistance QTL(Qfhs.ndsu-3BS) in Sumai 3 were used to detect the resistance loci by marker assisted selection(MAS) in the plants of the F₂ population.Identification of resistance to both powdery mildew and FHB in field showed that 12 plants resistant to both diseases were obtained.In addition, the agronomic traits of these plants were better than those of Sumai 3, and are perhaps the excellent parental materials for wheat breeding.     

黄瓜-酸黄瓜渐渗系霜霉病抗性及感病前后几种酶活性的变化

 Using resistant and susceptible cultivars as controls, the resistant evaluation to Pseudoperonospora cubensis was carried out in 12 introgression lines from wide cross between cucumber(Cucumis sativus L.) and sour cucumber(Cucumis hystrix Chakr.). Three enzyme activities including POD, SOD and PAL were analyzed before and 7 d after inoculation, and the POD isozyme was detected by polyacrylamide electrophoresis. The inoculation results showed that, of the 12 accessions, 3 were identified as high resistant, 5 were moderately resistant and 4 were moderately susceptible to downy mildew. The enzyme activities of POD, SOD and PAL were greatly increased in resistant accessions after inoculation. PAL enzyme activities showed close correlation with disease rating before or after inoculation, which implicated that PAL enzyme activity might be used to estimate the resistance to downy mildew. POD isozyme electrophoresis showed that the number and intensity for the bands of resistant lines were significantly increased more than those of susceptible lines after inoculation.     

云南甘蔗宿根矮化病调查及种茎温水处理脱菌效果检测

 Based on the specific primer from the nucleotide sequences between 16S-23S rDNA, Polymerase chain reaction (PCR) approach for detecting Leifsonia xyli subsp. xyli (Lxx) was established. The approach was applied to detect Lxx from 30 cultivars collected from two main sugar cane producing areas in Yunnan and 10 hot-water treatment samples. The results showed that 80% of the cultivars were infected by Lxx and hot-water treatment was proved to be an efficient measure to control but not completely eliminate Lxx in sugar cane tissues. The PCR products amplified from six infected cultivars were cloned and sequenced, six sequences were acquired and analyzed. It indicated that the six sequences were identical and showed 100% similarity with the isolates from Brazil, Australia and Fujian, and 99.54% with the isolate from Louisiana.     

灰枣红点软腐病病原菌的鉴定

 The damage and symptoms of jujube fruit soft rot in Xinzheng, Henan Province, were investigated from 2006 to 2008, and the pathogen was identified based on the morphological characteristics and the ITS se-quence of ribosome DNA. The results showed that the aerial mycelium of colony was white in color in the first four days, then turned gray after incubation on PDA for 5-6 d at 25℃ and became black two weeks later. The mycelia grew luxuriantly with velvet character. The pycnidium was flask-shaped with a height of 196.9μm and a width of 213.3μm on the avereage. The conidium was colorless with single cell and had the shape of spindle, its size was (15.0-20.0)μm× (4.5-6.5)μm. The conidiophore was fastigiate. The homology of ITS sequence of ribosome DNA between the tested strain NXK and Botryosphaeria dothidea (GenBank ac-cession number:AJ938005) reached 99.87%, with a difference of only two base pairs. Based on the results of both morphological characters and molecular identification, the pathogen of jujube fruit soft rot in Xinzheng was identified as B. dothidea (Moug. ex Fr.) Ces. et de Not..     

基于MAXENT的大豆南北方茎溃疡病菌在中国适生区的预测

利用MAXENT生态位模型和GIS系统,对大豆南北方茎溃疡病菌在我国的适生区进行预测.模型分析结果表明,这两种病菌在我国的潜在适生区域广泛.大豆北方茎溃疡病菌除了我国的宁夏、海南省外,其它省市均有该菌的适生分布区,其中适生等级高的地区主要在江苏、安徽、浙江、上海、江西和湖北6省.大豆南方茎溃疡病菌除了宁夏、青海、西藏外,我国的其它地区均为该菌的潜在适生区域,其中适生等级高的地区主要集中在江西、上海、江苏、安徽、浙江、河南以及陕西南部、四川东部和重庆的部分地区.     

CLIMEX-GIS预测大豆北方茎溃疡病菌在中国的潜在分布

大豆北方茎溃疡病菌是大豆的重要病原菌,广泛分布于世界主要大豆产区,造成严重的产量和品质损失。本文应用生物模型CLIMEX结合GIS软件预测大豆北方茎溃疡病菌在中国的适生区,并根据EI值划分相应的适生等级。结果表明,大豆北方茎溃疡病菌在我国绝大部分地区适合生长,其中东北地区、华北地区和云贵高原地区处于中适生区或高适生区。该菌在我国还未报道,通过分析其在我国潜在分布区对于防止病菌的传入、传播和蔓延有重要的检疫意义。     

Molecular Detection of Diaporthe phaseolorum and Phomopsis longicolla from Soybean Seeds

ABSTRACT Species-specific detection of Diaporthe phaseolorum and Phomopsis longicolla from soybean seeds was accomplished using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and TaqMan chemistry. To use these detection systems, fungal DNA was released from soybean seed coats using an ultrasonic processor to break the cells. DNA fragment lengths ranged from 200 to 1,200 base pairs (bp), with the majority of fragments <500 bp. Based on DNA sequences of the internal transcribed spacer (ITS) regions of ribosomal DNA, three TaqMan primer/probe sets were designed. Primer/probe set PL-5 amplified a 96-bp fragment within the ITS1 region of P. longicolla, D. phaseolorum var. caulivora, D. phaseolorum var. meridionalis, and D. phaseolorum var. sojae. Set PL-3 amplified a 86-bp DNA fragment within the ITS2 region of P. longicolla. Set DPC-3 amplified a 151-bp DNA fragment within the ITS2 region of D. phaseolorum var. caulivora. TaqMan primer/probe sets were able to detect as little as 0.15 fg (four copies) of plasmid DNA. When using PCR-RFLP for Diaporthe and Phomopsis detection, the sensitivity was as low as 100 pg of pure DNA. Among 13 soybean seed lots from Italy and the United States, the total Diaporthe and Phomopsis detected using a traditional seed-plating technique ranged from 0 to 32%. P. longicolla was most prevalent, followed by D. phaseolorum var. sojae. D. phaseolorum var. caulivora, which only occurred in 0.5% of the Italian seed lots, was not detected in the U.S. seed lots. D. phaseolorum var. meridionalis was not detected in either the U.S. or Italian seed lots. Using TaqMan primer/probe set PL-3, the frequency of P. longicolla was 18% in seed lot I3, similar to the frequency obtained from PCR-RFLP and potato dextrose agar plating detection. The frequencies of D. phaseolorum and P. longicolla in each seed lot obtained by the different detection methods were comparable with respect to total infection and individual species detection. However, TaqMan detection provided the fastest results of all the methods tested.     

华重楼斑枯病病原鉴定

2018年,四川汶川县重楼种植区的华重楼出现一种新的病害—华重楼斑枯病,该病害主要危害叶片,发生率为35%,天气适宜时可引起整株叶片枯死。为鉴定引起四川汶川县华重楼斑枯病的病原菌,本试验采用组织分离法对病原菌进行分离,利用科赫氏法则验证其致病性,依据菌株的形态学和基于rDNA-ITS和RPB2基因序列分析对病原菌进行鉴定。结果表明,分离菌株的菌落形态、分生孢子器和分生孢子形态与Didymella sp.相似;经分子生物学鉴定,该菌ITS-RPB2基因序列与亚隔孢壳属D.glomerata(登录号为FJ427013、GU371781)的同源性为100%。因此,将引起重楼斑枯病的病原菌鉴定为D.glomerata。     

小麦全蚀病生防细菌的筛选和鉴定

为获得对小麦全蚀病菌有良好拮抗效果的生防菌株,分别从河南省商丘市及驻马店市小麦全蚀病发生田块中采集小麦根际土样,采用稀释平板涂布法共分离到1051株细菌,通过与全蚀病菌G1037菌株进行平板对峙筛选,最终获得9株具有明显拮抗效果且生长状况良好的菌株。16S rDNA序列比对及生理生化性状分析结果表明：菌株P155、P154、P16及P147为荧光假单胞菌Pseudomonas fluorescens,菌株P188和P97为恶臭假单胞菌Pseudomonas putida,菌株LY3为产酶溶杆菌Lysobacter enzymogenes,菌株S38为嗜根寡养单胞菌Stenotrophomonas rhizophila,菌株B20为洋葱伯克霍尔德Burkholderia cepacia。产抗生素相关基因的检测结果发现,菌株P147含吩嗪和硝吡咯菌素合成基因,菌株B20含硝吡咯菌素合成基因。除B20、LY3、S38和P147外,其余菌株均可产生嗜铁素。9株细菌都产蛋白酶。除P97、B20和S38外,其余菌株均可产脂肽类物质。盆栽试验结果表明,9株生防菌对小麦全蚀病都具有较好的防治效果,菌株P155和P154的防治效果最好,相对防效分别为67.11%和63.82%,略高于3%的苯醚甲环唑种衣剂的防治效果。研究结果表明这些细菌具有作为小麦全蚀病生防菌的潜力。     

龙牙百合炭疽病病原菌鉴定

To clarify the causal pathogen of bulb rot within Lilium brownii var.viridulum cultivated in Yichun,Jiangxi Province,a field investigation was performed in manufacturing base in 2017.The pathogen was isolated from diseased bulbs and further identified base on morphological characteristics,pathogenicity testing,sequencing alignment and phylogenic analysis.By combining morphological characteristics with analysis of nucleotide sequences on rDNA internal transcribed spacer (ITS),actin (ACT),beta-tubulin (TUB2),chitin synthase (CHS) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH),the fungal isolates were identified as Colletotrichum spaethianum.Taken together,the test with Koch's postulates confirmed that C.spaethianum was the pathogen of L.brownii var.viridulum bulb rot.     

龙牙百合炭疽病病原菌鉴定

To clarify the causal pathogen of bulb rot within Lilium brownii var.viridulum cultivated in Yichun,Jiangxi Province,a field investigation was performed in manufacturing base in 2017.The pathogen was isolated from diseased bulbs and further identified base on morphological characteristics,pathogenicity testing,sequencing alignment and phylogenic analysis.By combining morphological characteristics with analysis of nucleotide sequences on rDNA internal transcribed spacer (ITS),actin (ACT),beta-tubulin (TUB2),chitin synthase (CHS) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH),the fungal isolates were identified as Colletotrichum spaethianum.Taken together,the test with Koch's postulates confirmed that C.spaethianum was the pathogen of L.brownii var.viridulum bulb rot.     

浑善达克沙地榆遗传多样性的研究

浑善达克沙地榆 ( Ulmuspumila var. sabulosa)是白榆的一个变种 ,天然分布于浑善达克沙地 ,在维护草原生态系统的稳定方面起着重要作用。本文应用 RAPD技术对浑善达克沙地榆的遗传多样性和系统地位进行了研究。在浑善达克沙地榆六个居群和对照白榆两个居群中 ,1 6个有效引物共获得了 1 1 5个位点 ,其中居群水平多态性位点为 49个 ,占 42 .6 ,高于 H amrick等的统计得出的平均多态位点比率 ( 3 4 ) ,表明在长期的进化过程中 ,居群内发生了较高的遗传变异 ,个体水平多态性位点为 89个 ,占 77.4。根据遗传距离进行聚类得出 :居群水平上以 0 .1为阈值 ,浑善达克沙地榆和对照白榆聚为明显的两支 ,本实验结果支持浑善达克沙地榆作为白榆一个变种的结论 ;遗传多样性指数分析表明 ,个体水平上浑善达克沙地榆各居群之间遗传距离有一定的差异 ,并与地理分布范围相关。浑善达克沙地榆由于各居群都存在相对较大的遗传变异 ,反映了在居群内具有较大的变异潜力。本实验结果也表明 ,RAPD可应用于浑善达克沙地榆遗传多样性及系统学的研究。文中还对浑善达克沙地榆的遗传变异与繁育系统的关系进行了讨论。     

一种侵染滇重楼的Potexvirus病毒分离物分子鉴定及其3'末端序列分析

 从云南武定的滇重楼上得到一个病毒分离物Paris-YN,病毒粒体为弯曲线状。利用RT-PCR扩增获得一条1074bp的片段,序列比较分析发现其与马铃薯X病毒属(Potexvirus)病毒3'末端的结构最为相似,且与属内的白三叶草花叶病毒等20个不同分离物3'末端有36.7%~58.9%的同源性;该病毒cp基因长639个核苷酸,编码212个氨基酸(22.8kDa),与20个Potexvirus病毒分离物的CP氨基酸序列比较发现,Paris-YN与白三叶草花叶病毒的CP氨基酸同源性最高(60.1%)。证据表明,该分离物可能为Potexvirus的新成员,暂命名为重楼X病毒(Paris polyphylla virus X)。