Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil

Extracellular lignocellulose-degrading enzymes are responsible for the transformation of organic matter in hardwood forest soils. The spatial variability on a 12 × 12 m plot and vertical distribution (0–8 cm) of the ligninolytic enzymes laccase and Mn-peroxidase, the polysaccharide-specific hydrolytic enzymes endoglucanase, endoxylanase, cellobiohydrolase, 1,4-β-glucosidase, 1,4-β-xylosidase and 1,4-β-N-acetylglucosaminidase and the phosphorus-mineralizing acid phosphatase were studied in a Quercus petraea forest soil profile. Activities of all tested enzymes exhibited high spatial variability in the L and H horizons. Acid phosphatase and 1,4-β-N-acetylglucosaminidase exhibited low variability in both horizons, while the variability of Mn-peroxidase activity in the L horizon, and endoxylanase and cellobiohydrolase activities in the H horizon were very high. The L horizon contained 4× more microbial biomass (based on PLFA) and 7× fungal biomass (based on ergosterol content) than the H horizon. The L horizon also contained relatively more fungi-specific and less actinomycete-specific PLFA. There were no significant correlations between enzyme activities and total microbial biomass. In the L horizon cellulose and hemicellulose-degrading enzymes correlated with each other and also with 1,4-β-N-acetylglucosaminidase and acid phosphatase activities. Laccase, Mn-peroxidase and acid phosphatase activities correlated in the H horizon. The soil profile showed a gradient of pH, organic carbon and humic compound content, microbial biomass and enzyme activities, all decreasing with soil depth. Ligninolytic enzymes showed preferential localization in the upper part of the H horizon. Differences in enzyme activities were accompanied by differences in the microbial community composition where the relative amount of fungal biomass decreased and actinomycete biomass increased with soil depth. The results also showed that the vertical gradients occur at a small scale: the upper and lower parts of the H horizon only 1 cm apart were significantly different with respect to seven out of nine activities, microbial biomass content and community composition.     

Determination of microbial biomass and fungal and bacterial distribution in cattle faeces

As an important component of organic fertilizers, animal faeces require methods for determining diet effects on their microbial quality to improve nutrient use efficiency in soil and to decrease gaseous greenhouse emissions to the environment. The objectives of the present study were (i) to apply the chloroform fumigation extraction (CFE) method for determining microbial biomass in cattle faeces, (ii) to determine the fungal cell-membrane component ergosterol, and (iii) to measure the cell-wall components fungal glucosamine and bacterial muramic acid as indices for the microbial community structure. Additionally, ergosterol and amino sugar data provide independent control values for the reliability of the microbial biomass range obtained by the CFE method. A variety of extractant solutions were tested for the CFE method to obtain stable extracts and reproducible microbial biomass C and N values, leading to the replacement of the original 0.5 M K₂SO₄ extractant for 0.05 M CuSO₄. The plausibility of the data was assessed in a 28-day incubation study at 25 °C with cattle faeces of one heifer, where microbial biomass C and N were repeatedly measured together with ergosterol. Here, the microbial biomass indices showed dynamic characteristics and possible shifts in the microbial community. In faeces of five different heifers, the mean microbial biomass C/N ratio was 5.6, the mean microbial biomass to organic C ratio was 2.2%, and the mean ergosterol to microbial biomass C ratio was 1.1‰. Ergosterol and amino sugar analysis revealed a significant contribution of fungi, with a percentage of more than 40% to the microbial community. All three methods are expected to be suitable tools for analysing the quality of cattle faeces.     

Particle size fractionation of fungal and bacterial biomass in subalpine grassland and forest soils

Characterization of soil aggregates according to particle size fractions is a useful tool in process-oriented research into soil organic matter and biological properties. Substrate-induced respiration (SIR) inhibition was used to quantify microbial, fungal and bacterial biomass in particle size fractions of soils ranging from forest to grassland in a subalpine region of central Taiwan. In addition, ergosterol content was determined in the same samples to verify fungal biomass measured by SIR inhibition technique. Surface soil (0–10 cm) was fractionated into four particle size fractions: coarse sand (250–2000 μm), fine sand (53–250 μm), silt (2–53 μm) and clay (0.2–2 μm). The larger sized fractions (>250 μm and 53–250 μm) contained higher levels of fungal ergosterol than the smaller sized ones (2–53 μm and 0.2–2 μm). The largest particle size fraction (250–2000 μm) from all studied habitats showed the highest level of microbial biomass, with no clear trend in microbial biomass level among the other size fractions. SIR-calculated fungal biomass level and ergosterol converted fungal biomass content were positively correlated (r=0.71, p<0.05), and such correlation decreased as biomass levels were high. Ratios of fungi to bacteria ranged between 0.6 and 1.3 in fractions obtained in this study. This study indicates a high variability of microbial (fungal and bacterial) biomass level among particle size fractions in soil, and that the large-sized fractions tend to contain a high level of microbial biomass in a given ecosystem.     

Soil carbon sequestration and changes in fungal and bacterial biomass following incorporation of forest residues

Sequestering carbon (C) in forest soils can benefit site fertility and help offset greenhouse gas emissions. However, identifying soil conditions and forest management practices which best promote C accumulation remains a challenging task. We tested whether soil incorporation of masticated woody residues alters short-term C storage at forested sites in western and southeastern USA. Our hypothesis was that woody residues would preferentially stimulate soil fungal biomass, resulting in improved C use efficiency and greater soil C storage. Harvest slash at loblolly pine sites in South Carolina was masticated (chipped) and either (1) retained on the soil surface, (2) tilled to a soil depth of 40 cm, or (3) tilled using at least twice the mass of organics. At comparative sites in California, live woody fuels in ponderosa pine stands were (1) masticated and surface applied, (2) masticated and tilled, or (3) left untreated. Sites with clayey and sandy soils were compared in each region, with residue additions ranging from 20 to 207 Mg ha⁻¹. Total and active fungal biomass were not strongly affected by residue incorporation despite the high input of organics. Limited response was also found for total and active bacterial biomass. As a consequence, fungal:bacterial (F:B) biomass ratios were similar among treatments at each site. Total soil C was elevated at one California site following residue incorporation, yet was significantly lower compared to surface-applied residues at both loblolly pine sites, presumably due to the oxidative effects of tilling on soil organic matter. The findings demonstrated an inconsequential effect of residue incorporation on fungal and bacterial biomass and suggest a limited potential of such practices to enhance long-term soil C storage in these forests.     

Spatial changes of soil fungal and bacterial biomass from a sub-alpine coniferous forest to grassland in a humid, sub-tropical region

 Fungal and bacterial biomass were determined across a gradient from a forest to grassland in a sub-alpine region in central Taiwan. The respiration-inhibition and ergosterol methods for the evaluation of the microbial biomass were compared. Soil fungal and bacterial biomass both significantly decreased (P<0.05) with the shift of vegetation from forest to grassland. Fungal and bacterial respiration rates (evolved CO₂) were, respectively, 89.1 μl CO₂ g^–1 soil h^–1 and 55.1 μl CO₂ g^–1 soil h^–1 in the forest and 36.7 μl CO₂ g^–1 soil h^–1 and 35.7 μl CO₂ g^–1 soil h^–1 in the grassland surface soils (0–10 cm). The fungal ergosterol content in the surface soil decreased from the forest zone (108 μg g^–1) to the grassland zone (15.9 μg g^–1). A good correlation (R ²=0.90) was exhibited between the soil fungal ergosterol content and soil fungal CO₂ production (respiration) for all sampling sites. For the forest and grassland soil profiles, microbial biomass (respiration and ergosterol) declined dramatically with depth, ten- to 100-fold from the surface organic horizon to the deepest mineral horizon. With respect to fungal to bacterial ratios for the surface soil (0–10 cm), the forest zone had a significantly (P<0.05) higher ratio (1.65) than the grassland zone (1.05). However, there was no fungal to bacterial ratio trend from the surface horizon to the deeper mineral horizons of the soil profiles. Received: 30 March 2000     

Long term repeated burning in a wet sclerophyll forest reduces fungal and bacterial biomass and responses to carbon substrates

Soils from a long term experiment, established in 1972, incorporating replicated treatments of burning every 2 and 4 years with control plots were sampled in 2005 to determine the changes in microbial community structure, measured using phospholipid fatty acids (PLFAs) and functional diversity measured using multiple substrate induced respiration (SIR) tests (MicroResp™). Microbial biomass (total PLFA) in the 2 year burn treatments was 50% less than both the control and 4-year burn treatments. There was also concomitantly less respiratory activity which mirrored the known changes in soil C and substrate quality. Contrary to other studies soil bacterial PLFAs were reduced as much as fungal PLFAs in the 2-year burn and the short term (6 h) SIR of arginine, lysine, galactose and trehalose were significantly inhibited in the 2-year burn soils. The data suggest that a 4-year burn is a more sustainable practice for maintaining the original structure and function of the forest belowground ecosystem.     

Nitrous oxide production in soils and the ratio of the fungal to bacterial biomass

The proportion between the fungal and bacterial biomass, the potential activity of denitrification, and the intensity of N₂O production were determined in the soils (chernozem and soddy-podzolic) of secondary biocenoses formed upon the abandoning of agricultural lands. The substitution of meadow and forest vegetation for agrocenoses has led to an increase in the percentage of the fungal biomass in the upper soil horizons. The rate of the net N₂O production after the soil moistening positively correlated with the content of nitrates. In the soddy-podzolic soil (pH 3.7–5.6), the rate of nitrous oxide production was higher than that in the chernozem (pH 6.1–6.8). The rate of N₂O production was inversely proportional to the bacterial biomass in the soils.     

Effect of arsenic contamination on bacterial and fungal biomass and enzyme activities in tropical arsenic-contaminated soils

The importance of assessing the impacts of soil arsenic (As) contamination on microbial properties lay on the fact that microbes are instrumental in nutrient cycling and are therefore indicators of soil quality. In this study, soil chemical extraction methods were used to extract labile and freely exchangeable As (water-soluble As and sodium bicarbonate-extractable As), amorphous/crystalline Fe and Mn oxide-bound As (acid ammonium oxalate-extractable As and hydroxylamine hydrochloride-extractable As), and their impacts on microbial biomass (microbial biomass C, total bacterial and fungal biomass, active bacterial and fungal biomass), enzyme activities representing four major soil biogeochemical cycles, i.e., C (β-glucosidase activity), N (urease activity), P (acid phosphomonoesterase activity), S (acryl-sulfatase activity), and microbial activity (fluorescein diacetate hydrolysis and dehydrogenase activity) were investigated in As-contaminated soils of Ambagarh Chauki block, Chhattisgarh, Central India. The results revealed that the majority of the As in soils resided in the Fe/Mn oxide-bound fraction. The microbial biomass C, total and active fungal biomass, and enzyme activities were significantly inhibited by all the forms of As. However, water-soluble As, even though occupying only a small portion of the total As (0.9–2.9 %), exerted the greatest impact. Interestingly, total and active bacterial biomass was not significantly affected by As toxicity, suggesting their resistance to As. Urease activity was not affected by As pollution.     

Nutrient limitations to bacterial and fungal growth during cellulose decomposition in tropical forest soils

Nutrients constrain the soil carbon cycle in tropical forests, but we lack knowledge on how these constraints vary within the soil microbial community. Here, we used in situ fertilization in a montane tropical forest and in two lowland tropical forests on contrasting soil types to test the principal hypothesis that there are different nutrient constraints to different groups of microorganisms during the decomposition of cellulose. We also tested the hypotheses that decomposers shift from nitrogen to phosphorus constraints from montane to lowland forests, respectively, and are further constrained by potassium and sodium deficiency in the western Amazon. Cellulose and nutrients (nitrogen, phosphorus, potassium, sodium, and combined) were added to soils in situ, and microbial growth on cellulose (phospholipid fatty acids and ergosterol) and respiration were measured. Microbial growth on cellulose after single nutrient additions was highest following nitrogen addition for fungi, suggesting nitrogen as the primary limiting nutrient for cellulose decomposition. This was observed at all sites, with no clear shift in nutrient constraints to decomposition between lowland and montane sites. We also observed positive respiration and fungal growth responses to sodium and potassium addition at one of the lowland sites. However, when phosphorus was added, and especially when added in combination with other nutrients, bacterial growth was highest, suggesting that bacteria out-compete fungi for nitrogen where phosphorus is abundant. In summary, nitrogen constrains fungal growth and cellulose decomposition in both lowland and montane tropical forest soils, but additional nutrients may also be of critical importance in determining the balance between fungal and bacterial decomposition of cellulose.     

Influence of the species and geographical location on volatile composition of Spanish oak wood (Quercus petraea Liebl. and Quercus robur L.)

The influence of the species and geographical origin on the volatile composition of wood samples from 80 Spanish oaks (55 Quercus petraea Liebl. and 25 Quercus robur L.) has been studied. Oak volatile components were isolated by simultaneous distillation-extraction and analyzed by gas chromatography-mass spectrometry. cis- and trans-beta-methyl-gamma-octalactones were the main constituents, the cis stereoisomer being predominant. Other important volatile components were furfural, 5-methylfurfural, guaiacol, eugenol, vanillin, or syringaldehyde. The main differences were established between species, Quercus petraea being significantly richer in volatile compounds than Quercus robur; however, the variability found among trees was high. Differences among geographical provenances were much less important than those found between species.     

Shifts in fungal biomass and activities of hydrolase and oxidative enzymes explain different responses of litter decomposition to nitrogen addition

Biology and Fertility of Soils - Exogenous nitrogen (N) input is a key factor affecting litter decomposition. However, we have limited understanding on how anthropogenic N deposition affects the...     

Altered precipitation seasonality impacts the dominant fungal but rare bacterial taxa in subtropical forest soils

How soil microbial communities respond to precipitation seasonality change remains poorly understood, particularly for warm-humid forest ecosystems experiencing clear dry-wet cycles. We conducted a field precipitation manipulation experiment in a subtropical forest to explore the impacts of reducing dry-season rainfall but increasing wet-season rainfall on soil microbial community composition and enzyme activities. A 67% reduction of throughfall during the dry season decreased soil water content (SWC) by 17–24% (P < 0.05), while the addition of water during the wet season had limited impacts on SWC. The seasonal precipitation redistribution had no significant effect on the microbial biomass and enzyme activities, as well as on the community composition measured with phospholipid fatty acids (PLFAs). However, the amplicon sequencing revealed differentiated impacts on bacterial and fungal communities. The dry-season throughfall reduction increased the relative abundance of rare bacterial phyla (Gemmatimonadetes, Armatimonadetes, and Baoacteriodetes) that together accounted for only 1.5% of the total bacterial abundance by 15.8, 40, and 24% (P < 0.05), respectively. This treatment also altered the relative abundance of the two dominant fungal phyla (Basidiomycota and Ascomycota) that together accounted for 72.4% of the total fungal abundance. It increased the relative abundance of Basidiomycota by 27.4% while reduced that of Ascomycota by 32.6% (P < 0.05). Our results indicate that changes in precipitation seasonality can affect soil microbial community composition at lower taxon levels. The lack of community-level responses may be ascribed to the compositional adjustment among taxonomic groups and the confounding effects of other soil physicochemical variables such as temperature and substrate availability.     

Microbial biomass,N mineralization,and the activities of various enzymes in relation to nitrate leaching and root distribution in a slurry-amended grassland

High rates of cattle slurry application induce NO _inf3 ^sup- leaching from grassland soils. Therefore, field and lysimeter trials were conducted at Gumpenstein (Austria) to determine the residual effect of various rates of cattle slurry on microbial biomass, N mineralization, activities of soil enzymes, root densities, and N leaching in a grassland soil profile (Orthic Luvisol, sandy silt, pH 6.6). The cattle slurry applications corresponded to rates of 0, 96, 240, and 480 kg N ha^-1. N leaching was estimated in the lysimeter trial from 1981 to 1991. At a depth of 0.50 m, N leaching was elevated in the plot with the highest slurry application. In October 1991, deeper soil layers (0–10, 10–20, 20–30, 30–40, and 40–50 cm) from control and slurry-amended plots (480 kg N ha^-1) were investigated. Soil biological properties decreased with soil depth. N mineralization, nitrification, and enzymes involved in N cycling (protease, deaminase, and urease) were enhanced significantly (P<0.05) at all soil depths of the slurry-amended grassland. High rates of cattle slurry application reduced the weight of root dry matter and changed the root distribution in the different soil layers. In the slurry-amended plots the roots were mainly located in the topsoil (0–10 cm). As a result of this study, low root densities and high N mineralization rates are held to be the main reasons for NO _inf3 ^sup- leaching after heavy slurry applications on grassland.     

Impact of heavy metal amended sewage sludge on forest soils as assessed by bacterial and fungal biosensors

Bacterial and fungal bioluminescence-based biosensors were used as indicators of potential heavy metal toxicity to microorganisms in the needle litter of a mature Pinus radiata forest under heavy metal contaminated sewage sludge. Sewage sludge was amended with increasing concentrations of Cu, Ni and Zn and applied to the surface of a mature P. radiata forest. The response of the bacterial and fungal biosensors to soluble Cu, Ni and Zn in needle litter extracts was investigated. The bioluminescence response of the bacterial biosensor Escherichia coli HB101 pUCD607 declined as water-soluble Zn concentrations increased. The effective concentrations that gave a 50% reduction in bioluminescence (EC₅₀ values) for water-soluble Zn and total litter Zn were 1.3 mg l⁻¹ and 3700 mg kg⁻¹, respectively. The bioluminescence response of the fungal biosensor Armillaria mellea declined as soluble Cu concentrations increased. The EC₅₀ values for water-soluble Cu and total litter Cu were 0.12 mg l⁻¹ and 540 mg kg⁻¹, respectively. No decline in bioluminescence was noted for either the bacterial or fungal biosensor on exposure to increasing concentrations of water-soluble Ni. The use of a combination of bacterial and fungal biosensors offers a rapid and sensitive tool for assessing toxicity of heavy metals to microorganisms and, thus, elucidating the environmental impact of contaminants in sewage sludge on litter dwelling microorganisms.     

A simulation model of the water uptake of a beech forest: testing variations in root biomass and distribution

A validated mathematical model was used to simulate the effects of roots biomass and distribution on the water uptake of a 120-year old beech (Fagus silvatica L.) stand located at Solling (West Germany). The modell was based on the soil-water movement equation including an extraction term to account for the water uptake of the root system. This extraction term varies with the meteorological conditions, root density and soil water potential. Root biomass values considered were: 500 kg. ha^?-1, 1000 kg. ha^?-1, 2000 kg. ha^?-1, 4000kg. ha^?-1 and 6000 kg. ha^?-1. For each of these values, five different distributions were tested. These ranged between a soil profile 0.40m deep with high root concentration to a 1.00m soil profile with idealized uniform root distribution. The model was run under two different rainfall conditions: i) an uncommon dry year (1971), (ii) a hypothetical normal year without a dry period. The model showed the fundamental importance of the root distribution under the given meteorological conditions. This was more evident when the root biomass was low and medium. A good root distribution throughout the profile allowed the forest to overcome long dry periods. With the maximum root biomass value the distribution had no effect on the forest water uptake.     

Restoration of pasture after topsoil removal: Effects on soil carbon and nitrogen mineralization,microbial biomass and enzyme activities

The restoration of soil biochemical activities after topsoil removal to depths 0 (S₀), 10 (S₁₀) or 20 (S₂₀)cm, and re-establishment of a grass-clover pasture, was studied with Judgeford silt loam, a Typic Dystrochrept, in the Wellington area. Organic matter contents of the S₁₀ and S₂₀ samples were initially 58 and 40%, and biochemical activities, on average, 32 and 20%, respectively of S₀ values. Organic matter content increased only slowly in the stripped plots. Yields of pasture herbage, soil CO₂ and mineral-N production, three indices of microbial biomass, and invertase, amylase, cellulase, xylanase, urease, phosphatase, and sulphatase activities increased more rapidly, but had not reached S₀ levels after 3 yr. The ratios of biomass indices varied with depth of topsoil removed; over the trial, biomass-C to ATP ratios averaged 236, 205, and 168 in the S₀, S₁₀, and S₂₀ samples respectively. Biochemical activities were generally correlated significantly with herbage yields in the S₁₀ or S₂₀, but not in the S₀ plots; organic C or total N contents were not generally correlated significantly with yields over the first 2 yr. Overall, invertase, and then sulphatase, activity appeared to be the best indicators of soil fertility status in this stripped soil.     

Identification of a precursor of beta-methyl-gamma-octalactone in the wood of sessile oak (Quercus petraea (Matt.) Liebl.)

The 6'-O-gallate derivative of (3S, 4S)-4-beta-D-glucopyranosyloxy-3-methyloctanoic acid was isolated for the first time from the wood of Sessile oak (Quercus petraea (Matt.) Liebl.) and shown to be a precursor of cis-beta-methyl-gamma-octalactone. The structure of this precursor was determined by HRFAB-MS, NMR, LCMS, and chiral analysis of the liberated (3S,4S)-beta-methyl-gamma-octalactone on a chiral fused silica capillary column. Optical rotation was shown to be identical to that of the same compound previously isolated from the wood of Platycarya strobilacea Sieb. et Zucc. by Tanaka and Kouno in 1996. Moreover, the 6'-O-gallate derivative of a threo-4-beta-D-glucopyranosyloxy-3-methyloctanoic acid was tentatively identified as a minor precursor of trans-beta-methyl-gamma-octalactone in the same wood of Sessile oak.     

Examination of microbial biomass in beech forest moder profiles

Microbial biomass C, ATP, and substrate-induced respiration were measured in the organic layers and the mineral A horizon of three beech forest soils with moder humus differing in Ca and Mg supply. Analyses of variance showed that horizon-specific differences explained most of the variance in the three microbial parameters. All three were significantly interrelated, with Spearman rank correlation coefficients of between 0.86 and 0.93. However, differences in the decline of these parameters with depth led to horizon-specific differences in their ratios. Thus, the ratios were not markedly interrelated. The mean ATP: microbial C ratio was 5.2 mol ATP g^-1 C in the L 2 layer, 19.5 in the F layers, and 9.6 in the H and A horizons. The ratio of substrate-induced respiration to microbial C varied between 39.3 and 82.2 O₂h^-1 g^-1 C in the F1 layers and between 5.3 and 32.1 l in the other layers. It is concluded that the use of different parameters can help to analyze both horizonand site-specific differences in microbial performance.     

Considering fungal:bacterial dominance in soils - Methods, controls, and ecosystem implications

An expectation in soil ecology is that a microbial communities’ fungal:bacterial dominance indicates both its response to environmental change and its impact on ecosystem function. We review a selection of the increasing body of literature on this subject and assess the relevance of its expectations by examining the methods used to determine, the impact of environmental factors on, and the expected ecosystem consequences of fungal:bacterial dominance. Considering methods, we observe that fungal:bacterial dominance is contingent on the actual measure used to estimate it. This has not been carefully considered; fungal:bacterial dominance of growth, biomass, and residue indicate different, and not directly relatable aspects, of the microbial community’s influence on soil functioning. Considering relationships to environmental factors, we found that shifts in fungal:bacterial dominance were not always in line with the general expectation, in many instances even being opposite to them. This is likely because the traits expected to differentiate bacteria from fungi are often not distinct. Considering the impact of fungal:bacterial dominance on ecosystem function, we similarly found that expectations were not always upheld and this too could be due to trait overlap between these two groups. We explore many of the potential reasons why expectations related to fungal:bacterial dominance were not met, highlighting areas where future research, especially furthering a basic understanding of the ecology of bacteria and fungi, is needed.     

Surface and subsurface organic carbon, microbial biomass and activity in a forest soil sequence

The distribution of organic carbon, microbial biomass and activity, from the surface down to 70 cm, was investigated through three semiarid Mediterranean soils: (1) a Typic Calcixeroll covered with a native pinewood (NP), (2) a Typic Calcixerept under a mature pine plantation (PP) on abandoned agricultural terraces and (3) a Typic Haploxerept under a grassland (GS). NP and GS had the highest and lowest soil organic carbon (SOC) pools, respectively. Both of them had decreasing SOC contents with depth. PP, which held intermediate SOC levels, showed an increase in total organic C and humic substances C with depth due to their mineralization in the anciently ploughed topsoil layer. The soils were similarly ranked as regards their microbial biomass and activity: NP>PP>GS. In general, the microbial communities were less dense and active towards the deeper horizons. More specifically, PP and GS had a very populated and active top 20-cm layer, which was attributed to the dense root system of their grass cover. NP maintained high microbial biomass and activity levels from 0 to 70 cm, progressively diminishing along with shrub root density (e.g. microbial biomass C dropped from 2342 to 394 mg kg⁻¹ soil). The latter soil presented the sharpest drop of its microbial properties with depth, what was considered an indicator of its quality. Generally decreasing patterns of microbial biomass and activity were not always coincident with previously published gradients of microbial metabolic abilities and genetic structure. This reinforces the need of combining biomass, activity and biodiversity measurements if the ecosystem's functioning is to be fully understood and a real monitoring of degradation processes and restoration strategies is to be achieved.