Molecular mapping of the brace root traits in sorghum (Sorghum bicolor L. Moench)

The presence and morphology of plant brace roots are important root architecture traits. Brace roots contribute significantly to effective anchorage and water and nutrient uptake during late growth and development, and more importantly, have a substantial influence on grain yield under soil flooding or water limited conditions. However, little is known about the genetic mechanisms that underlie brace root traits. In this study, quantitative trait loci (QTLs) for presence of brace roots from the sorghum landrace “Sansui” were mapped and associated molecular markers were identified. A linkage map was constructed with 109 assigned simple sequence repeat markers using a F₂ mapping population derived from the cross Sansui/Jiliang 2. Two QTLs associated with presence of brace roots were localized on chromosomes 6 and 7. The major QTL on chromosome 7 between markers Dsenhsbm7 and Xcup 70 explained about 52.5% of the phenotypic variation, and the minor QTL on chromosome 6 was flanked by Xtxp127 and Xtxp6 and accounted for 7.0% of phenotypic variation. These results will provide information for the improvement of sorghum root architecture associated with brace roots.     

Mapping of QTLs underlying flowering time in sorghum [Sorghum bicolor (L.) Moench]

Due to its critical importance in crop yield, the photoperiodic regulation of flowering time is considered an important trait in sorghum breeding programs. In this study, quantitative trait loci for flowering time were detected using an F₂ population derived from a cross between Kikuchi Zairai, a late-flowering cultivar originating from Japan and SC112, an early-flowering cultivar originating from Ethiopia. F₂ plants were grown with their parents under a natural day length and a 12 h day length. Two linkage maps were constructed using 213 simple sequence repeats markers. Nine quantitative trait loci controlling flowering time were identified in F₂ plants grown under a natural day length, whereas 7 QTLs were identified under a 12 h day length. Five QTLs controlling flowering time were shared under both of the day length conditions.     

Quantitative-genetic parameters of sorghum [Sorghum bicolor (L.) Moench] grown in semi-arid areas of Kenya

Low and erratic rainfall constitutes a major constraint to sorghum production, and impedes sorghum improvement in semi-arid tropics. To estimate quantitative-genetic parameters for sorghum under variable stress conditions, three sets of factorial crosses between four by four lines each were grown with parents and a local cultivar in eight macro-environments in semi-arid areas of Kenya. Fourteen traits were recorded including grain yield, above-ground drymatter, harvest index, days to anthesis, leaf rolling score, and stay-green. Environmental means for grain yield ranged from 167 to 595 g m-2. Mean hybrid superiority over mid-parent values was 47, 31, and 9% for grain yield, above-ground drymatter, and harvest index, respectively. Differences among both lines and hybrids were highly significant for all traits. Genotype × environment interaction variances were larger than genotypic variances for grain yield, above-ground drymatter, and harvest index. Corresponding heritabilities ranged between 0.72 and 0.84. Variation among hybrids was determined by GCA and SCA effects for most characters. Predominance of additive-genetic effects was found for grain yield components, plant height, and leaf rolling score. Lack of variation in GCA was noted among female lines for major performance traits. While low leaf rolling score was correlated with high grain yield, there was no such association for stay-green. Hybrid breeding could contribute to sorghum improvement for semi-arid areas of Kenya. To increase selection progress for major performance traits, genetic variation among female lines should be enhanced. Importance of genotype × environment interaction underlines the necessity of evaluating breeding materials under a broad range of dryland conditions.     

Combining ability and heterosis as influenced by male-sterility inducing cytoplasms in sorghum [Sorghum bicolor (L.) Moench]

An investigation was carried out to assess the efficiency of A₂ cytoplasmic-nuclear male-sterility (CMS) system in comparison to the widely used A₁ cytoplasm in terms of general combining ability (gca) effects of male-sterile (A-) lines and mean performance, specific combining ability (sca) effects and mid-parent heterosis of hybrids for days to 50% flowering, plant height and grain yield at International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Andhra Pradesh, India in 2001 and 2002 rainy seasons. The material for the study consisted of six pairs of iso-nuclear, allo-plasmic (A₁ and A₂) A-lines and 36 iso-nuclear hybrids produced by crossing these A-lines with three dual restorer (R-) lines. The results revealed that cytoplasm and its first-order interaction with year, R- and A-lines did not appear to contribute to variation in iso-nuclear hybrids for plant height and grain yield. Cytoplasm had limited effect on gca effects of A-lines and on sca effects and mid-parent heterosis of iso-nuclear hybrids for days to 50% flowering, plant height and grain yield. The mean days to 50% flowering, plant height and grain yield of A₂ cytoplasm-based hybrids were comparable with those of widely used A₁ cytoplasm-based hybrids. The relative frequency of the occurrence of the A₁- and A₂-based hybrids with significant sca effects and mid-parent heterosis indicated that A₂ CMS system is as efficient as A₁ with a slight edge over A₁ for commercial exploitation. The implications of these results are discussed in relation to opportunities for broadening not only cytoplasm base but also nuclear genetic base of both the hybrid parents.     

Genetic mapping and QTL analysis for sugar yield-related traits in sugarcane

Genetic improvement of sugar content in sugarcane would benefit from the availability of sufficient DNA markers and a genetic map. Genetic linkage maps were constructed to identify quantitative trait loci (QTLs) for seedling brix (SB), brix (B), sucrose percent in juice (SUC), stalk number (SN), stalk length (SL), stalk diameter (SD), internodes (INT), number of green leaves (NGL), at three crop cycles across seven environments in a segregating population with 207 individuals derived from a bi-parental cross of sugarcane elite cultivars. Linkage analysis led to the construction of eight linkage groups (LGs) for Co86011 and sixteen LGs for CoH70. The combined length of the two linkage maps was 2606.77 cM distributed over 24 LGs. 31 QTLs were identified: 2 for SB, 7 for B, 6 for SUC, 4 for SN, 1 for SL, 3 for SD, 6 for INT and 2 for NGL at LOD scores ranging from 2.69 to 4.75. 7 QTLs (22 %) had stable effect across crop year and locations. Markers from parents were found to be associated with both positive and negative effect on all of the traits analyzed. The most important QTLs intervals identified in this study using single-dose marker, were qB2, qSUC2, qINT2 and qB2, qSUC2, qSL2, qINT2 located between SSR markers UGSM31₅₄₈ and UGSM31₆₄₉. These QTLs could be put into use in marker assisted breeding.     

A major QTL for plant height is linked with bloom locus in sorghum [Sorghum bicolor (L.) Moench]

Plant height is one of the most important agronomic traits in sorghum with its relevance for biomass, grain yield, fodder and lodging. To understand its genetic basis, the quantitative trait loci (QTL) were identified using a recombinant inbred line (RIL) population consisting of 168 RILs derived from the cross between the two sorghum inbred lines 296B (dwarf) and IS18551 (tall) over six seasons. Two major QTL were identified one each on chromosomes SBI-06 and SBI-07 corresponding to the Dw2 and Dw3 gene loci together accounting 41 % plant height variation. In addition, a morphological bloom trait locus which remained unlinked in the linkage map was found to be significantly linked with plant height in single marker analysis explaining 22 % of the trait variation. By comparing the map positions of Dw1, Dw2 and Dw3, the new locus for plant height linked with bloom is proposed as Dw4 locus. Both SSR and the morphological bloom loci linked with height QTL of the present study can be employed as effective tools in marker-assisted breeding for rapid conversion of selected inbred parent lines either as dwarf seed (male sterile) parents or taller pollinators for hybrid seed industry, or for developing high biomass lines in sweet sorghum for exploitation as high bio-fuel crop.     

Effect of humidity on intergeneric pollinations of iap (Inhibition of Alien Pollen) sorghum [Sorghum bicolor (L.) Moench]

The production of interspecific or intergeneric progeny involving Sorghum spp. is greatly enhanced by the presence of the iap (Inhibition of Alien Pollen) allele in sorghum [Sorghum bicolor (L.) Moench]. Variation in the expressivity of the iap phenotype has been observed in previous studies, leading to the hypothesis that the humidity during pollination is affecting the degree of alien pollen adhesion and pollen tube growth. The objective of this study was to determine the optimum humidity for maximum maize pollen tube growth on sorghum florets homozygous for iap. Growth chambers were used to create environments of 45, 65, and 85 % humidity with reciprocal crosses made between the 65 and 85 % humidity chambers. Maize pollen was dusted onto the stigmas of Tx3361 (iap iap) and ATx623 (Iap Iap). Pollen adhesion and germination were higher for pollinations with Tx3361 at all humidity levels but the greatest adhesion and germination was observed at 45 % humidity for Tx3361. Under this humidity, pollen tube growth to the style and ovary was observed. The results indicate that lower humidity maximizes maize pollen adhesion and germination on the stigmas of Tx3361. Analysis of the differences in adhesion between Tx3361 and ATx623 indicate that Iap affects pollen adhesion at the stigma surface and may be controlling pollen–pistil incompatibility in interspecific crosses in sorghum.     

Identification and characterization of RAPD and SCAR markers linked to anthracnose resistance gene in sorghum [Sorghum bicolor (L.) Moench]

Anthracnose, one of the destructive foliar diseases of sorghum growing in warm humid regions, is incited by the fungus Colletotrichum graminicola.The inheritance of anthracnose resistance was studied using the parental cultivars of Sorghum bicolor (L.) Moench, HC 136 (susceptible to anthracnose) and G 73 (anthracnose resistant). The F₁ and F₂ plants were inoculated with the local isolates of C. graminicola cultures. The F₂ plants showed a segregation ratio of 3 (susceptible): 1(resistant) indicating that the locus for resistance to anthracnose in sorghum accession G 73 segregates as a recessive trait in a cross to susceptible cultivar HC 136. RAPD (random amplified polymorphic DNA) marker OPJ 01₁₄₃₇ was identified as marker closely linked to anthracnose resistance gene in sorghum by bulked segregant analysis of HC 136 × G73 derived recombinant inbred lines (RILs) of sorghum. A total of 84 random decamer primers were used to screen polymorphism among the parental genotypes. Among these, only 24 primers were polymorphic. On bulked segregant analysis, primer OPJ 01 amplified a 1437 bp fragment only in resistant parent G 73 and resistant bulk. The marker OPJ 01₁₄₃₇ was cloned and sequenced. The sequence of RAPD marker OPJ 01₁₄₃₇ was used to generate specific markers called sequence characterized amplified regions (SCARs). A pair of SCAR markers SCJ 01-1 and SCJ 01-2 was developed using Mac Vector program. SCAR amplification of resistant and susceptible parents along with their respective bulks and RILs confirmed that SCAR marker SCJ 01 is at the same loci as that of RAPD marker OPJ 01₁₄₃₇ and hence, is linked to anthracnose resistance gene. Resistant parent G 73 and resistant bulk amplified single specific band on PCR amplification using SCAR primer pairs. The RAPD marker OPJ 01₁₄₃₇ was mapped at a distance of 3.26 cM apart from the locus governing anthracnose resistance on the sorghum genetic map by the segregation analysis of the RILs. Using BLAST program, it was found that the marker showed 100 per cent alignment with the contig{_}3966 located on the longer arm of chromosome 8 of sorghum genome. Therefore, these identified RAPD and SCAR markers can be used in the resistance-breeding program of sorghum anthracnose by marker-assisted selection.An erratum to this article can be found at     

Mapping the QTLs underlying drought stress at developmental stage of sorghum (Sorghum bicolor (L.) Moench) by association analysis

This study was conducted to identify quantitative trait loci (QTLs) for drought tolerance in sorghum (Sorghum bicolor (L.) Moench) by association mapping using a simple sequence repeat (SSR)-marker-based diversity research set. Genotypic data for 98 SSR marker loci on ten chromosomes were used for the association analysis. The experiment was conducted under control (well-watered) and drought stress conditions, and the phenotypic values of 23 morphological traits were recorded. Drought tolerance was assessed by using a leaf drying score as a parameter of the tolerance/susceptibility: scores were assigned on a scale from 1 (most tolerant) to 9 (most susceptible). Under the control conditions, 17 QTLs associated with 12 traits were identified on chromosomes 1, 2, 4, 8, 9, and 10, with ?Log₁₀ (P) ranging from 2.5 to 7.6 and explaining 9.5–57.5 % of the total phenotypic variance for the traits. Under the drought stress conditions, nine QTLs associated with 8 traits were identified on chromosomes 1, 2, 3, and 10 that explained 9–61.2 % of the total phenotypic variance for the traits, with ?Log₁₀ (P) ranging from 2.5 to 3.5. QTLs for some traits were detected only under the drought stress condition, suggesting that these traits are important in drought tolerance. These QTLs could be used to further dissect the genetic and physiological basis of drought tolerance in sorghum.     

Isolation and characterization of resistance gene analogs (RGAs) from sorghum (Sorghum bicolor L. Moench)

Degenerate primers designed based on known resistant genes (R-genes) and resistance gene analogs (RGAs) were used in combinations to elucidate RGAs from Sorghum bicolor, cultivar M 35-1. Most of the previously tried primer combinations resulted in amplicons of expected 500–600 bp sizes in sorghum along with few novel combinations. Restriction analysis of PCR amplicons of expected size revealed a group of fragments present in a single band indicating the heterogeneous nature of the amplicon. Many of these were cloned and some were considered for analysis. The nucleotide sequence of different cloned fragments was done and their predicted amino acid sequences compared to each other and to the amino acid sequences of known R-genes revealed significant sequence similarity. A cluster analysis based on neighbor-joining (N-J) method was carried out using sorghum RGAs (SRGAs) together with several analogous known R-genes resulting in two major groups; cluster-I comprising only SRGAs and cluster-II comprised of known R-gene sequences along with three SRGAs. Further analysis clearly indicated similarity of SRGAs in overall sense with already known ones from other crop plants. These sequences can be used as guidelines to detect, map and eventually isolate numerous R-genes in sorghum.     

高粱—苏丹草杂交种产量构成因子及最适密度的研究

通过高梁-苏丹草杂交种产量构成因子分析表明，影响单株产量的主要因素是主茎粗和叶长；影响单位面积产量的主要因素是密度、叶长和单株产量，其中密度对单位面积产量的直接通径系数最大，为1.0299^**。随机区组试验结果表明杂交种最适密度为30万株/hm^2。     

Heterosis and combining ability for yield and resistance to grain mold in tannin-free photoperiod-insensitive sorghum [Sorghum bicolor (L) Moench] in Senegal

Journal of Crop Science and Biotechnology - Increasing sorghum production per unit area in the farmer’s field by developing high yielding tannin-free and grain mold tolerant varieties in...     

A genetic study of popping quality in Sorghum (Sorghum bicolor (L.) Moench)

Summary Two crosses of sorghum, Sorghum bicolor (L.) Moench (IS 1054 × ICSV-1, and IS 5604 × IS 1054) were evaluated in parental, F1, F2, and backcross generations for the variation in their popping quality as measured by pop volume (ml). Dominance was in the direction of low pop volume. Dominance and additive gene effects, in that order, governed most of the variation, while significant dominance x dominance type of interaction effects could also be detected. There was no evidence for higher order gene interactions.Approved as Journal Article 630 by the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, P.O. 502 324, Andhra Pradesh, India.     

Genetic divergence among a non-restorer collection of sorghum (Sorghum bicolor (L.) Moench) and its relationship with heterosis

Summary A genetic diversity analysis in a collection of 171 non-restorer lines of sorghum (Sorghum bicolor (L.) Moench) using D² technique and canonical variate analysis indicated that considerable variation in grain yield has been added to the collection by the addition of lines derived from random mating populations. The efficiency of D² and canonical variate techniques in distinguishing extremely diverse genotypes was confirmed. However, the two techniques showed weak correspondence in their clusters. The F₁ hybrids of 15 diverse lines exhibited no relationship between heterosis or per se performance of crosses and diversity in their parents. Therefore, traditional plant breeding methods are being advocated.Approved by ICRISAT as Journal Article no. 435.     

In vitro screening and field evaluation of tissue-culture-regenerated sorghum (Sorghum bicolor (L.) Moench) for soil stress tolerance

Summary Sorghum bicolor (L.) Moench is generally quite sensitive to salt and acid (high aluminium) soil stresses, but quite tolerant of drought stress. As with any stress phenomenon, intra-specific variability exists within the genus. In vitro cell selection and somaclonal variation offer an alternative to traditional breeding methodology for generating improved breeding lines for hybrid development. A field selection protocol was developed for the three soil stresses and inter-stress evaluations were conducted in an effort to find multiple, stress-tolerant genotypes. The acid soil-drought stress, super-tolerant selections were located by the R₇ generation when exposed to a combined aluminium-drought stress field environment and when the regeneration population (number of regenerated lines from one callus source) was maintained at 15,000 plants or higher. A variant frequency of 0.1 to 0.2% for stress tolerance and acceptable agronomic traits among the surviving somaclones, provided an adequate number of phenotypes with desirable agronomic characteristics and a high level of soil stress tolerance. Subsequent research verified that the stress-tolerant regenerants had superior acid soil and drought stress tolerance to that of the donor parents, that their yield capabilities under stress were superior to their parents, and that their stress tolerance attributes were transferred in hybrid combinations. In vitro selection was not effective in increasing the number of field stress survivors. In fact, superior germplasms were developed from non-stressed callus or salt-stressed callus. In vitro selection reduced regeneration frequency and subsequent survival of plants under field stress. In vitro-stressed regenerants should be subjected only to non-stressed environments to maintain population numbers for field selection and thereafter should be subjected to stress environments during later (R₅₊) generations. The optimal strategy for the exploitation of somaclonal variation may be through short-term cell culture (< 12 months) with no attempt at in vitro selection.     

Studies on Seed Residues Following Carbofuran Application in Sorghum (Sorghum bicolor [L.] Moench) with Reference to Viability

Soil application of different formulations of carbofuran at 3.0 and 1.5 g.a.i. metre row⁻¹ did not have any impact on vigour and viability of the resultant seeds of sorghum. Fresh seeds from encecap 'A', encecap 'B' and furadan treated plots contained higher residues than the permissible limits and in artificially aged seeds the quantities were below the permissible limits. The degradation was evident with the growth and development of seedlings grown from fresh and aged seeds. Residues from lower doses dissipated faster than higher doses. The general decline in percentage germination and vigour could not be attributed to the residual toxicity but only to the ageing phenomena.     

Sorghum [Sorghum bicolor (L.) Moench] landrace variation and classification in North Shewa and South Welo, Ethiopia

Fourteen phenotypic characters were chosen for the purpose of obtaining taxonomic evidence on the resemblances of 177 accessions of sorghum from North Shewa and South Welo regions of Ethiopia. Canonical Discriminant Analysis (CDA) and Modeclus cluster analysis were conducted to see if the 177 accessions could form clusters based on their morphological characters, and to test the consistency of farmers’ naming of the five most common Sorghum landraces represented by 44 accessions. Multivariate analyses grouped the 177 accessions into three clusters linked by a few phenotypic intermediate landraces. A botanical key was established for easy classification of the Sorghum crop plants grown in the study area. The number of accessions of the five most common landraces named by the farmers formed dissimilar groups, suggesting that farmers’ naming of these Sorghum landraces are consistent. Midrib color, grain color, grain size, glume color, glume hairiness, and grain shape were the leading morphological characters used by the farmers in naming these Sorghum landraces. This revised version was published online in July 2006 with corrections to the Cover Date.     

Storage of Non-structural Carbohydrates in Sweet Sorghum [Sorghum bicolor (L.) Moench.]: Comparison of Sterile and Fertile Lines

The accumulation of soluble carbohydrates in vegetative parts of sweet sorghum ( Sorghum bicolor (L.) Moench.) represents an intermediate reserve pool for grain filling as well as an irreversible storage up to maturity. In order to study the effect of Sterility on soluble sugar accumulation in vegetative parts, two cytoplasmic male sterile (CMS) lines of sweet sorghum were compared with their corresponding fertile mamtainers for non-structural carbohydrate concentrations in shoots. Plants were harvested at four different physiological stages. The lines showed significant differences in the yield of non-structural carbohydrates. At maturity, the yields of soluble carbohydrates from vegetative parts of the two sterile lines were 93 % and 43 % higher than the yield of the two corresponding fertile lines. At that stage, sucrose represented about 80 % of total soluble carbohydrates and the higher yield of soluble carbohydrates of sterile lines was mainly due to the higher yield of sucrose. This indicates that the yield of extractable carbohydrates, especially sucrose, in vegetative parts of sweet sorghum could be considerably improved by using sterile lines which are utilized in hybrid production.