Linkage relationships of some genes for disease and insect resistance and semidwarf stature in rice

Summary Two-way classification of 400 F₃ families from the rice cross IR2153-159-1 x Babawee for plant stature and for resistance to brown planthopper, green leafhopper, and bacterial blight indicated that Glh 3 (dominant gene for resistance to green leafhopper) and bph 4 (recessive gene for resistance to brown planthopper) are linked with a map distance of 34 units. The bph 4 gene also appears to be linked with sd ₁ (recessive gene for semidwarf stature) although the linkage is less strong. However, bph 4 and Xa 4 (dominant gene for bacterial blight resistance) are inherited independently of each other. No segregation for susceptibility was observed among F₃ families of crosses between varieties having Bph 3 and bph 4 genes for resistance to brown planthopper. Apparently, Bph 3 and bph 4 are either allelic or closely linked.     

Studies on linkage relations of genes controlling disease and insect resistance and nature of endosperm in rice

Summary Five hundred F₃ lines derived from the cross TN1/IR2061-464-6 were examined for the nature of endosperm and resistance to bacterial blight, brown planthopper, and grassy stunt. TN1 has non-glutinous endosperm and is susceptible to bacterial blight, grassy stunt, and brown planthopper. IR2061-464-6 has a glutinous endosperm and is homozygous resistant to bacterial blight, grassy stunt, and brown planthopper. The F₃ data fit the 1:2:1 ratio expected for monogenic control of each trait. A two-way classification for all the traits indicated that these four traits are inherited independently. Thus, it should be possible to recombine these four traits in various combinations in rice varieties.     

Molecular tagging of a gene for resistance to brown planthopper in rice (Oryza sativa L.)

An introgression line derived from an interspecific cross between Oryzasativa and Oryza officinalis, IR54741-3-21-22 was found to beresistant to an Indian biotype of brown planthopper (BPH). Genetic analysisof 95 F₃ progeny rows of a cross between the resistant lineIR54741-3-21-22 and a BPH susceptible line revealed that resistance wascontrolled by a single dominant gene. A comprehensive RAPD analysisusing 275 decamer primers revealed a low level of (7.1%) polymorphismbetween the parents.RAPD polymorphisms were either co-dominant (6.9%), dominant forresistant parental fragments (9.1%) or dominant for susceptible parentalfragments (11.6%). Of the 19 co-dominant markers, one primer,OPA16, amplified a resistant parental band in the resistant bulk and asusceptible parental band in the susceptible bulk by bulked segregantanalysis. RAPD analysis of individual F₂ plants with the primerOPA16 showed marker-phenotype co-segregation for all, with only onerecombinant being identified. The linkage between the RAPD markerOPA16₉₃₈ and the BPH resistance gene was 0.52 cM in couplingphase. The 938 bp RAPD amplicon was cloned and used as a probe on122 Cla I digested doubled haploid (DH) plants from aIR64xAzucena mapping population for RFLP inheritance analysis and wasmapped onto rice chromosome 11. The OPA16₉₃₈ RAPD markercould be used in a cost effective way for marker-assisted selection of BPHresistant rice genotypes in rice breeding programs.     

Inheritance of resistance to whitebacked planthopper,Sogatella furcifera (Horvath) in some rice cultivars

Summary The genetics of resistance to whitebacked planthopper, Sogatella furcifera (Horvath) in ten resistant cultivars was studied. The reactions of the F₁, F₂ and F₃ populations of resistant varieties with Taichung Native 1, a suspectible check, showed that WBPH resistance is monogenic in nature and governed by dominant gene(s) in Ptb 19 and IET 6288 and recessive gene in eight cultivars viz. ARC 5838, ARC 6579, ARC 6624, ARC 10464, ACR 11321, ARC 11320, Balamawee and IR 2415-90-4-3. Allelic relationship of resistance gene(s) in the test cultivars revealed recessive gene in IR 2415-90-4-3, ARC 5838 and ARC 11324 to be allelic but it was non allelic to the resistance gene in ARC 6624. Cultivars ARC 6579, ARC 11321 and Balamawee have identical gene among themselves but their relationship with IR 2415-90-4-3, ARC 5838, ARC 11324 and ARC 6624 is unknown. The recessive gene in ARC 10464 is non-identical to all other cultivars having the recessive gene except ARC 6624 with which its relationship needs further investigation.     

Genetical analysis of resistance to Mycosphaerella pinodes in pea seedlings

Summary In studies of the inheritance of resistance, pea seedlings of seven lines in which stems and leaves were both resistant to Mycosphaerella pinodes were crossed with a line in which they were both susceptible. With seven of the crosses resistance was dominant to susceptibility. When F₂ progenies of five crosses were inoculated on either stems or leaves independently, phenotypes segregated in a ratio of 3 resistant: 1 susceptible indicating that a single dominant gene controlled resistance. F₂ progenies of one other cross gave ratios with a better fit to 9 resistant: 7 susceptible indicating that two co-dominant genes controlled resistance. The F₂ progeny of another cross segregated in complex ratios indicating multigene resistance.When resistant lines JI 97 and JI 1089 were crossed with a susceptible line and leaves and stems of each F₂ plant were inoculated, resistance phenotypes segregated independently demonstrating that leaf and stem resistance were controlled by different genes. In two experiments where the F₂ progeny of the cross JI 97×JI 1089 were tested for stem and leaf resistance separately, both characters segregated in a ratio of 15 resistant:1 susceptible indicating that these two resistant lines contain two non-allelic genes for stem resistance (designated Rmp1 and Rmp2) and two for leaf resistance (designated Rmp3 and Rmp4). Evidence that the gene for leaf resistance in JI 1089 is located in linkage group 4 of Pisum sativum is presented.     

Inheritance of resistance to angular leaf spot (Isariopsis griseola Sacc.) in french bean (Phaseolus vulgaris L.)

Summary Angular leaf spot (Isariopsis griseola Sacc.) is a serious disease of French bean in the hills of India and 40 to 70 per cent of the green pods are damaged and rendered unmarketable. Crosses were made between PLB 257, (Phaseolus coccineus L.), a red flowering pole tope, resistant to angular leaf spot, and Contender (Phaseolus vulgaris L.), a highly susceptible commercial cultivar. Studies of the F₁, F₂, and F₃ progenies indicated that PLB 257, carries a recessive gene imparting resistance to angular leaf spot.     

Identification of alleles at two loci controlling resistance to Phomopsis stem blight in narrow-leafed lupin (Lupinus angustifolius L.)

The genetics of resistance to Phomopsis stem blight caused by Diaporthe toxica Will., Highet, Gams & Sivasith. in narrow-leafed lupin (Lupinus angustifolius L.) was studied in crosses between resistant cv. Merrit, very resistant breeding line 75A:258 and susceptible cv. Unicrop. A non-destructive glasshouse infection test was developed to assess resistance in the F₁, F₂, selected F₂-derived F₃ (F_2:3) families, and in selfed parent plants. The F₁ of Unicrop × 75A:258 (and reciprocal cross) was very resistant, and the F₂ segregated in a ratio of 3:1 (resistant: susceptible), which suggested the presence of a single dominant allele for resistance in 75A:258. In Merrit × Unicrop (and reciprocal), the F₁ was moderately resistant, and the F₂ segregated in a ratio of 3:1 (resistant: susceptible). Thus Merrit appeared to carry an incompletely dominant resistance allele for resistance. The F₁ of Merrit × 75A:258 (and reciprocal) was very resistant and the F₂ segregated in a ratio of 15:1 (resistant: susceptible), which supported the existence of independently segregating resistance alleles for resistance in 75A:258 and Merrit. Alleles at loci for early flowering (Ku) and speckled seeds (for which we propose the symbol Spk) segregated normally and independently of the resistance alleles. Resistant F₂ plants gave rise to uniformly resistant or segregating F_2:3 families, whereas susceptible F₂ plants gave rise only to susceptible F_2:3 families. However, the variation in resistance in the F₂ and some F_2:3 families of crosses involving 75A:258, from moderately to extremely resistant, was greater than that expected by chance or environmental variation. We propose the symbols Phr1 to describe the dominant resistance allele in 75A:258, and Phr2 for the incompletely dominant resistance allele in Merrit. Phr1 appears to be epistatic to Phr2, and expression of Phr1 may be altered by independently segregating modifier allele(s). This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetics of resistance to ascochyta blight in chickpea (Cicer arietinum L.)

Summary Six chickpea lines resistant to Ascochyta rabiei (Pass.) Lab. were crossed to four susceptible cultivars. The hybrids were resistant in all the crosses except the crosses where resistant line BRG 8 was involved. Segregation pattern for diseases reaction in F₂, BCP₁, BCP₂ and F₃ generations in field and glasshouse conditions revealed that resistance to Ascochyta blight is under the control of a single dominant gene in EC 26446, PG 82-1, P 919, P 1252-1 and NEC 2451 while a recessive gene is responsible in BRG 8. Allelic tests indicated the presence of three independently segregating genes for resistance; one dominant gene in P 1215-1 and one in EC 26446 and PG 82-1, and a recessive one in BRG 8.Research paper No. 3600     

Inheritance of resistance to pea blight (Ascochyta pinodella) and induction of resistance in pea (Pisum sativum L.)

Summary Pea blight caused by Assochyta pinodella does considerable damage to the pea crop every year. To ascertain the inheritance of resistance to pea blight and incorporate resistance in the commercial cultivars, crosses were made between Kinnauri resistant to pea blight and four highly susceptible commercial pea cultivars — Bonneville, Lincoln, GC 141 and Sel. 18. Studies of the F₁'s, F₂'s, back crosses and F₃'s indicated that Kinnauri carries a dominant gene imparting resistance to pea blight.     

Inheritance of resistance to four cucurbit viruses in Cucurbita moschata

Cucurbita moschata cv. Nigerian Local has been used as a source of resistance to Zucchini yellow mosaic virus (ZYMV), Watermelon mosaic virus (WMV), Papaya ringspot virus W (PRSV-W) and Cucumber mosaic virus (CMV) in breeding both Cucurbita moschata and Cucurbita pepo. We used the F₁, F₂ and BC₁ generations derived from the cross C.-moschata cv. Waltham Butternut × Nigerian Local to study the inheritance of resistance to each of the viruses. We confirmed monogenic dominant resistance to ZYMV previously attributed to Zym, and we report monogenic dominant resistance to WMV and CMV which we propose to designate Wmv and Cmv, respectively. A single recessive gene, which we propose to designate prv, controls resistance to PRSV. DNA samples were extracted from a Waltham Butternut BC₁ F₁ population screened with ZYMV and analyzed using randomly amplified polymorphic DNA markers. No RAPD markers linked to ZYMV resistance were found. This revised version was published online in July 2006 with corrections to the Cover Date.     

河北省地方水（陆）稻品种抗病虫性研究

对河北省地方水、陆品种抗两病两虫性进行了鉴定,并在此基础上分析了抗稻瘟病、抗白叶枯、抗褐稻虱、抗白背飞虱品种的分布情况。对抗性频度较高的抗稻瘟病性、抗白叶枯病性从水、陆稻,熟期,不同稻作区等方面作了详细研究。结果表明：抗稻瘟病、白叶枯病品种频度高,分别为45.86%和50.34%,高抗率仅为0.75%和2.05%,抗率分别为24.81%和15.75%;抗褐稻虱、白背飞虱品种频度很低,分别为4.51%和3.34%,高抗褐稻虱品种2个,无抗至高抗白背飞虱品种。抗稻瘟病、白叶枯种质频度和强度均是陆稻高于水稻。纬度、海拔高,气候寒冷的张家口、承德两市稻瘟病抗性强度低;唐山、秦皇岛两市抗性强度高;冀南零星种植亚区抗性强度最高。抗白叶枯病种质分布规律是随着纬度的增加,温热条件的降低呈递减趋势。     

Genetics of resistance to early blight (Alternaria solani Sorauer) in tomato (Lycopersicon esculentum L.)

The genetic nature of early blight resistance in tomato was studied in three crosses at seedling and adult plant stages. A six generation mean analysis of the cross Arka Saurabh (susceptible) × IHR1939 (resistance) and its reciprocal cross revealed that the resistance to early blight was conferred by recessive polygenes at both seedling and adult plant stages. This polygenic early blight resistance revealed the importance of additive and additive × additive gene effects at seedling stage and higher magnitude of dominance and dominance× dominance gene effects at adult plant stage. Evaluation of parents, F₁, F₂ and backcross generations of IHR1816 (resistance) × IHR1939 (resistance) revealed that the early blight resistance genes in IHR1816 (Lycopersicon esculentum NCEBR-1) and IHR1939 (Lycopersicon pimpinellifolium L4394) are independent. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic analysis of resistance to green leafhopper, Nephotettix virescens (Distant), in three varieties of rice

The genetics of resistance to green leafhopper, Nephotettix virescens (Distant), in rice varieties ‘IR36’ and ‘Maddai Karuppan’ and breeding line ‘IR20965‐11‐3‐3’ was studied. The reactions of F₁ hybrids, F₂ populations and F₃ lines from the crosses of test varieties with the susceptible variety ‘TN1’ revealed that resistance in ‘IR36’ and ‘Maddai Karuppan’, is governed by single recessive genes while resistance in ‘IR20965‐11‐3‐3’ is controlled by a single dominant gene. Allele tests with the known genes for resistance to green leafhopper revealed that the recessive gene of ‘IR36’ is different from and inherited independently of Glh1, Glh2, Glh3, Glh4, Glh5, Glh8 and Glh9t. This gene is designated as glh10t. The recessive gene of ‘Maddai Karuppan’ and the dominant gene of ‘IR20965‐11‐3‐3’ are also non‐allelic to Glh1, Glh2, Glh3, Glh4, Glh5 and Glh8t. Thus, the dominant gene of IR20965‐11‐3‐3 is designated as Glh11t. The allelic relationships of the recessive gene of ‘Maddai Karuppan’ with glh8 and glh10t should be investigated.     

Inheritance of black testa colour in lentil (Lens culinaris Medik.)

The inheritance of testa (seed coat) colour and interaction of cotyledon and testa colours were studied in seven crosses of lentil (Lens culinaris Medik.) involving parents with black, brown, tan or green testa and with orange, yellow or dark green cotyledons. Analysis of F₂ and F₃ seed harvested from F₁ and F₂ plants, respectively, revealed that although black testa is dominant over nonblack testa, its penetrance is not complete since both F₁ plants and heterozygous F₂ plants produced varying proportions of seeds with either black or nonblack testa. The F₂ populations of the crosses between parents with brown and tan, as well as brown and green, testa segregated in the ratio of 3 brown : 1 tan and 3 brown : 1 green, respectively, indicating monogenic dominance of brown testa colour over tan or green. The expression of testa colour was influenced by cotyledon colour when parents with brown or green testa are crossed with those having orange or green cotyledons. Thus F₂ seeds from these crosses with a green testa always had green cotyledons and never orange cotyledons. F₂ seeds from these crosses with a brown testa always had orange cotyledons and never green cotyledons. These results suggest diffusion of a soluble pigment from the cotyledons to the testa. This revised version was published online in July 2006 with corrections to the Cover Date.     

Choosing rice germplasm for evaluation

Summary Using the evaluation database on the world collection of rice, Oryza sativa, conserved at the International Rice Research Institute, different sampling strategies for choosing germplasm were compared. Random, stratified, sequential and analysed sets of germplasm were chosen and the frequency of finding resistance to different rice pests, the brown planthopper, green leafhopper and whitebacked planthopper, and diseases, bacterial blight and blast were compared. The frequency of the geographically restricted javanica race of rice was also compared in the different germplasm sets. The results indicate that where no prior information is available to choose germplasm for evaluation, for the same sample number, germplasm representing broad genetic diversity are preferable to other sampling strategies.     

The inheritance of resistance to head blight caused by Fusarium culmorum in winter wheat

Summary Crosses were made among ten winter wheat genotypes representing different levels of resistance to Fusarium head blight to obtain F₁ and F₂ generations. Parents, F₁ and F₂ were inoculated with one strain of Fusarium culmorum. Data on incidence of head blight 21 days after first inoculation were analyzed. Broad-sense heritabilities averaged 0.39 and ranged from 0.05 to 0.89 in the individual F₂ families. The joint-scaling test indicated that the inheritance of Fusarium head blight resistance was adequately described by the additive-dominance model, with additive gene action being the most important factor of resistance. With respect to the non-additive effects, dominance of resistance predominated over recessiveness. The number of segregating genes governing resistance in the studied populations was estimated to vary between one and six. It was demonstrated that resistance genes differed between parents and affected resistance differently.     

Response to selection for high and low partial resistance to leaf blast in F2 populations of three rice crosses

Summary Divergent selection for higher and lower partial resistance to leaf blast was applied in F₂ populations of crosses between the rice cultivars IR36, IR64 and CO39 after exposure to a virulent isolate. IR36 and IR64 are partially resistant while CO39 is highly susceptible. As selection criteria the number of sporulating lesions in leaves of the main culm or the lesion density in the topmost leaf relative to other F₂ plants with the same stage of development were used. A highly significant and meaningful response to selection was obtained in most cases, but the heritability was low. Realized heritabilities varied from 0.14 to 0.25 depending on the cross and were similar for both selection criteria. Selection for improved partial resistance to leaf blast is possible as early as the F₂. The efficiency of selection is probably much higher if replicated tests could be made, and better results are therefore expected if selection among F₃ lines is carried out. The results indicated that the relatively low infection efficiency in IR36 and IR64 is oligo- or polygenically controlled.     

Inheritance of resistance and genetic relationships among soybean plant introductions to races of soybean cyst nematode

Summary The objectives of this study were to determine if genes for resistance to soybean cyst nematode (SCN) in soybean PI 437654 were identical or different from the genes in Peking, and PI 90763. The F₂ plants and F₃ families were studied from crosses between PI 437654, Peking, and PI 90763. The cross PI 437654 × susceptible Essex was included to determine inheritance of resistance to SCN. For Race 3, PI 437654 was found to have genes in common with Peking and PI 90763. The segregation in PI 437654 × Essex indicated the presence of one dominant and two recessive genes. For Race 5, PI 437654 indicated the presence of similar genes as those in PI 90763 and Peking whereas, PI 437654 × Essex indicated the action of the segregation ratios of two dominant and two recessive genes. For Race 14, the data from the cross PI 437654 × PI 90763 indicated monogenic inheritance with resistance being dominant; whereas PI 437654 × Peking showed a recessive gene controlling resistance. The segregation in PI 437654(R) × Essex(S) suggested one dominant and two recessive genes for Race 14 reaction.     

Diallel analyses reveal the genetic control of resistance to ascochyta blight in diverse chickpea and wild Cicer species

Ascochyta blight is a major fungal disease affecting chickpea production worldwide. The genetics of ascochyta blight resistance was studied in five 5 × 5 half-diallel cross sets involving seven genotypes of chickpea (ICC 3996, Almaz, Lasseter, Kaniva, 24B-Isoline, IG 9337 and Kimberley Large), three accessions of Cicer reticulatum (ILWC 118, ILWC 139 and ILWC 184) and one accession of C. echinospermum (ILWC 181) under field conditions. Both F₁ and F₂ generations were used in the diallel analysis. The disease was rated in the field using a 1–9 scale. Almaz, ICC 3996 and ILWC 118 were the most resistant (rated 3–4) and all other genotypes were susceptible (rated 6–9) to ascochyta blight. Estimates of genetic parameters, following Hayman’s method, showed significant additive and dominant gene actions. The analysis also revealed the involvement of both major and minor genes. Susceptibility was dominant over resistance to ascochyta blight. The recessive alleles were concentrated in the two resistant chickpea parents ICC 3996 and Almaz, and one C. reticulatum genotype ILWC 118. The wild Cicer accessions may have different major or minor resistant genes compared to the cultivated chickpea. High narrow-sense heritability (ranging from 82% to 86% for F₁ generations, and 43% to 63% for F₂ generations) indicates that additive gene effects were more important than non-additive gene effects in the inheritance of the trait and greater genetic gain can be achieved in the breeding of resistant chickpea cultivars by using carefully selected parental genotypes.     

Inheritance of the resistant reaction of the lettuce cultivar `Grand Rapids' to the southern root-knot nematode Meloidogyne incognita (Kofoid & White) Chitwood

Resistance to the southern root-knot nematode Meloidogyne incognita Chitwood would be an important attribute of lettuce Lactuca sativa L. cultivars adapted to both protected and field cultivation in tropical regions. `Grand Rapids' and a few other cultivars are reported to be resistant to this nematode. In this paper, we studied the inheritance of the resistant reaction of `Grand Rapids' (P₂) in a cross with a standard nematode-susceptible cultivar Regma-71 (P₁). F₁(Regina-71 × Grand Rapids) and F₂ seed were obtained, and inoculated along with the parental cultivars with different races of M. incognita to evaluate nematode resistance. Broad sense heritability estimates for the number of galls and of egg masses per root system, gall size and gall index were generally in the order of 0.5 or higher. Class distributions of these variables over generations P₁, P₂, F₁ and F₂ were in agreement with simulated theoretical distributions based on monogenic inheritance models. F₃ families were obtained from randomly sampled F₂ plants and tested for reaction to the nematode. The frequency ratio of homozygous resistant, segregating and homozygous susceptible F₃ families did not differ from the 1:2:1 ratio expected from monogenic inheritance. M. incognita resistance appears to be under control of a single gene locus. The Grand Rapids allele (for which the symbol Me is proposed) is responsible for the resistant reaction, and shows high (though incomplete) penetrance, variable expressivity and predominantly additive gene action. This revised version was published online in July 2006 with corrections to the Cover Date.