Breed characteristics associated with <Emphasis Type="Italic">LEP</Emphasis> gene polymorphisms in Holstein cattle

Genotyping of the leptin gene locus (LEP) (SNP: R25C, Y7F, and A80V) has been performed in the animals from two groups in the Holstein cattle herd. Groups 1 and 2 included the fourth to seventh lactation cows and the heifers, respectively. The objective of the surveys was to study the Holstein cattle polymorphisms of the leptin gene associated with the productive longevity according to the related literature data. It has been ascertained that the LEP gene (SNP: R25C, Y7F, and A80V) polymorphism in the Holstein animals determines the certain breed characteristics that can be used for introduction to marker assisted selection. (Particularly, a low (0.04–0.15) frequency of occurrence of the F allele is typical for the LEP-Y7F SNP; as for SNP LEP-A80V, a low frequency of occurrence (0–0.14) is typical for the homozygous animals with the VV genotype when compared to a rather high frequency of occurrence (0.36–0.45) in the heterozygous animals).     

Influence of polymorphism of <Emphasis Type="Italic">R25C</Emphasis> and <Emphasis Type="Italic">Y7F</Emphasis> loci of the leptin gene on the duration of economic use of the Ayrshire cattle

Two successive genotypings (in 2014 and 2017) of the leptin gene (LEP) by the R25C and Y7F loci were conducted in the herd of the Ayrshire cattle of the Niva Farm of Krasnodar Krai in order to study the influence of polymorphism of these loci on the duration of the economic use. DNA samples (n = 154) isolated from blood of animals with different periods of economic use have been analyzed. The need for genotyping in 2017 arose because of the ambiguous interpretation of the findings obtained in 2014. A higher frequency of occurrence of the RR genotype of the LEP in the group of long-livers could be explained both by better preservation of animals with the RR genotype and by random gene drift (in particular, by larger share of breeder bulls, the carriers of the R allele). It was found that, as in 2014, a group of long-liver cows genotyped in 2017 differed from the group of young cows genotyped in 2014 in the occurrence frequency of the RR genotype, which was doubled. Consequently, regardless of the experimental conditions, animals of this particular group may have a longer productive life. It has also been established that the polymorphism at the Y7F locus does not have a significant effect on the duration of the economic use of the Ayrshire cows.     

Effect of <Emphasis Type="Italic">GH</Emphasis> and <Emphasis Type="Italic">DGAT1</Emphasis> gene polymorphism on feeding qualities of bull calves

The aim of this paper is to study effects of GH and DGAT1 gene polymorphisms on feeding qualities of Hereford and Limousin bull calves bred in conditions of the Cis-Ural steppe zone. SNPs of genes GH and DGAT1 are investigated by polymerase chain reaction (PCR) and DNA restriction fragment length polymorphism (RFLP). The studied population of animals was assessed by defining the allele frequency and animal genotype occurrence for the studied gene SNPs, indicators of the actual and expected heterozygosity, and Pearson’s test. A study of polymorphism C214G of gene GH revealed that genotype LL prevails in Hereford and Limousin animals, 47.37 and 57.7%, respectively, while frequency of allele L is higher in Limousin bull calves (0.731). A study of polymorphism K232A of gene DGAT1 gene in both the populations showed absence of genotypes AA, which can be related to the low number of the studied animals. Expected heterozygosity indicators of gene GH are higher than the observed ones, and the observed heterozygosity is higher for DGAT1. The number of efficient alleles for the studied genes is higher for Hereford bull calves. In general, according to Pearson’s test, both the studied populations are in equilibrium. There is a significant effect of GH gene polymorphism on live weight gain rates at the end of sagination and total and average daily weight gains during animal raising.     

Genetic diversity of genus <Emphasis Type="Italic">Malus</Emphasis> Mill. for scab resistance genes

The results of molecular genetic analysis of wild species and varieties of genus Malus Mill. for loci of monogenic scab resistance are presented. Dominant allele of gene Rvi6 was identified in varieties of M. robusta 43199, M. hupehensis, and M. floribunda. Locus Rvi4 was detected in genotypes of M. robusta v. persicifolia, M. asiatica 2343, M. sieversii 13280, M. niedzwetzkyana 13279, M. purpurea 2392, M. orientalis 41623, M. orientalis 29476, M. orientalis 29 460, M. spectabilis v. albi plena, and M. spectabilis v. rubra plena. Gene Rvi5 in the test collection of wild species is absent.     

Distribution of Fungi from the Genus <Emphasis Type="Italic">Fusarium</Emphasis> Link. on Cereals

The species composition of fungi from the genus Fusarium was studied, and the frequency of occurrence on cereals was determined. Populations of Fusarium spp. were represented by widespread species F. culmorum, F. heterosporum, F. sporotrichioides, F. oxysporum, F. nivale, F. graminearum, F. avenacеum, F. gibbosum, F. sambucinum, F. moniliforme, etc. The dynamics and frequency of occurrence of Fusarium spp. has made it possible to characterize the state of the species of fungi in a wide range of climatic areas of cereal cultivation in the Russian regions. The prevalence of the genus Fusarium was caused by the cultivars’ susceptibility to micromycetes. The frequency of occurrence of Fusarium species isolated from roots was steady, and, on the ears, it depended on the influence of weather conditions during the growing season of plants. The study of the intraspecific variability of fungi from the genus Fusarium has revealed a significant difference in signs of toxicity and pathogenicity depending on biotic and abiotic factors. More than 50% of strains from the genus Fusarium possessed low pathogenicity but had severe toxicity to wheat seedlings. Most strains of F. sporotrichiodes, F. culmorum, and F. sambucinum were highly pathogenic (from 36.4 to 55.6%) and toxic (from 55.6 to 81.3%). High adaptability to preservation in the soil and on the roots of weeds and crop residues of most crops expressing pathogenic and toxic activity was conductive to the widespread Fusarium spp.     

Founder effect and genogeography of <Emphasis Type="Italic">CV</Emphasis>- and <Emphasis Type="Italic">BL</Emphasis>-mutations in black-and-white cattle

The results are obtained by simultaneous diagnostics of mutant CV- and BL-alleles. Five groups of animals–carriers and noncarriers of mutations are identified. In Russia the mutant CV-alleles are met more frequently because of the intensive use of their carriers. While elimination of BL-allele was started earlier due to developed methods, the diagnostics of CV-mutations has been undertaken later. Propagation of missense-mutations in the world and the Russian Federation has been occurring through the breeding bulls and cows–carriers. Initially spermobanks and, afterwards, cows were reserves for the diagnosed BLand CV-mutations.     

The Relationship between Drought Tolerance of <Emphasis Type="Italic">Laurus nobilis</Emphasis> L. and Environmental Factors in Conditions of the Southern Coast of Crimea

The present studies have shown Laurus nobilis L. to be a drought tolerant species. When the plant was first subjected to dehydration, the rate of net photosynthesis decreased from Pn = (8–10) to –1 μmol/(m² s) and to –3 μmol/(m² s) during the second dehydration before it was subsequently irrigated. The rewatering on August 5 and August 8 promoted a sharp burst of this parameter, but the Pn value was restored to its original level only after August 8. Soil drought caused a drop in a rate of transpiration from 65–70 to 10 mg/(m² s). Watering soil up to a 15% moisture level brought an increase in E = 25 mg/(m² s), but only the second watering managed to fully restore it to the initial value. Apical growth of the plants was closely correlated with soil moisture. As the soil moisture was reduced to W = 15–5%, the terminal growth reached a saturation point and started to plateau. Watering the soil up to W = 15% promoted apical growth by 4 mm. Reducing soil moisture to W = 3–4% caused a complete cessation of the growth. Subsequent watering to W = 27–28% led to a gradual and complete recovery of turgor and an increase in the growth rate up to 6–8 mm per day. The surface response functions Pn = f(I, W) and E = f(I, W) allowed us to determine conditions and levels of potential maximums and boundaries of the areas of optimum photosynthesis and transpiration: optimum Pn = 8–9 μmol/(m² s) with I = 900–1400 μmol/(m² s) and W = 17–24% and the optimum E = 25–35 mg/(m² s) with I = 1000–1400 μmol/(m² s) and W = 16–24%.     

Genetic differentiation of the Novosibirsk population of Primorsky honey bee

Seven microsatellite loci were evaluated to compare the allele pool of Primorsky honeybee population (n = 90), which was introduced into the Novosibirsk region (south-western Siberia), with the populations of Middle Russian (n = 191, A.m. mellifera), Mountain Grey Caucasian (n =113, A.m. caucasica), Carniolan (n = 61, A.m. carnica) and Carpathian (n = 184, A.m. carpatica) races. The degree of genetic differentiation in Novosibirsk population using a variety of criteria (Fst, Rst (AMOVA), Nei genetic distances) was evaluated.     

Intervalent Crosses: the Main Way of Creating Triploid Apple Cultivars

This paper presents history and ways of creating triploid apple cultivars differing from common diploid ones by less pronounced fruiting periodicity by years, higher marketability and weight of fruits, and self-fertility. In the search for an effective method of mass production of triploid seedlings, crosses of the type 4x × 4x, 4x × 3x, 4x × 2x, 3x × 4x, 3x × 3x, 3x × 2x, 2x × 4x, and 2x × 3x were studied. The most effective way of mass production of triploid seedlings was the 2x × 4x cross (diploid × tetraploid). In the group of 2x × 4x crosses, more than 9000 seedlings from different families were subjected to cytological analysis. The ratio of hybrid progeny in terms of ploidy levels was as follows: 30.3% diploids, 69.5% triploids, 0.2% tetraploids, and 0.04% aneuploids. It was established that triploids can also be obtained in 4x × 2x crosses; however, it is necessary to castrate the flowers in the maternal parent, since all apple tetraploids have high self-fertility. For the first time in the world, a series of triploid cultivars (approximately 20) was obtained from intervalent crosses of the diploid × tetraploid type in the All-Russia Research Institute of Fruit Crop Selection. Particularly interesting are triploid cultivars that have immunity to scab, which include nine cultivars, of which Aleksandr Boiko, Vavilovskoe, Maslovskoe, and Yablochnyi Spas are included in the State Register of breeding achievements allowed for use.     

Sampling of subterranean termites <Emphasis Type="Italic">Syntermes</Emphasis> spp. (Isoptera: Termitidae) in a eucalyptus plantation using point process and geostatistics

The Syntermes genus, the most significant termite pest in eucalyptus cultivation, damages roots and debarks plant rings. This can kill the seedlings of this plant, and thus require replanting. Integrated management, based on sampling plans can reduce damage to eucalyptus seedlings and allows the rational use of chemical control. The objectives were to model the spatial distribution of the Syntermes spp. foraging holes using the Matérn-cluster point process in the Cerrado region (Brazilian savannah), simulate a sampling plan for termite hole density, produce maps of foraging hole densities using geostatistics and validate the simulated sampling plan in the field. The distribution of the Syntermes spp. foraging holes was spatially non-homogeneous and it adjusted to the Matérn-cluster point process model in the Minas Gerais Cerrado areas. The best Syntermes sampling plan simulation in the area of Cerrado is to launch a circular 5 m radius parcel every 100 m (sampling error <5 %) in a systematic manner. The approach of point processes, combined with geostatistics, is adequate to produce maps for the termite Syntermes spp. infestation in the eucalyptus plantation.     

Genetic Diversity of <Emphasis Type="Italic">E. coli O157:H7</Emphasis> Isolated from Some Leafy Greens,Irrigated by Aleppo River,Using Random Amplified Polymorphic DNA (RAPD) Marker

In recent years, fresh fruits and vegetables have been linked to numerous foodborne illness outbreaks in different regions of the world. In Syria, there is not a lot of research that study E. coli and its serotypes by PCR technology. In this study, we have fulfilled a total count of bacteria, the census total coliform group, and Escherichia coli, as well as the serotype E. coli O157:H7 on some leafy greens (Spinacia oleracea, Beta vulgaris) irrigated by Aleppo River. The molecular characterization was done for ten strains of E. coli isolated from collected samples. The samples were inoculated on blood agar and suspicious colonies, then transferred to EMB and MacConkey agar using a primer (COL 1) in RAPD technic. Molecular characterization also performed ten strains of serotype E. coli O157:H7 isolated in medium (Sorbitol-MacCONKEY Agar), then by primers (OPA-03, OPA-13 OPC-12, OPE-20) in RAPD technic. The results showed significant differences between collected samples. The total count of bacteria in the first site (Handarat) for spinach and chard were the lowest, but in the fourth site (Jezraya) it was the highest among all samples. The results showed also the existence of E. coli in all sites except the first one in riverbed Handarat, and E. coli O157:H7 was found only in Jezraya village. Extracted DNA from samples was amplified by RAPD. after electrophoresis in the gel agarose, eleven different bands were detected from isolated strains of E. coli. These results refer to the great genetic diversity of Escherichia coli. For serotype E. coli O157:H7 thirty-four different bands were detected. RAPD analysis had the high discriminatory capacity for typing E. coli isolates. Because of its simplicity and rapidity, RAPD analysis appears to be a highly valuable tool for studying E. coli molecular epidemiology.     

Antioxidant content and growth at the initial ontogenesis stages of <Emphasis Type="Italic">Passiflora incarnata</Emphasis> plants under the influence of biostimulant Albit

The aim of this study was to determine the accumulation of antioxidants at аn early stage of development of organs of P. incarnata L. plants grown in greenhouses (medicinal aromatic plants were used for comparison), as well as to evaluate the effect of biostimulant Albit. The use of amperometric and biochemical methods made it possible to measure and evaluate the total antioxidant content in aqueous extracts of leaves of aromatic plants with sedative effects compared to aqueous extracts of P. incarnata L. leaves. The latter are characterized by a lower level of antioxidant accumulation. Seed treatment with biostimulant Albit and foliar treatment of aerial parts of the P. incarnata L. plant increased the total antioxidant content and the content of carotenoids, chlorophylls a and b, and the yield of aerial parts of the plant by 10–15%. The findings suggest that the P. incarnata L. plants grown in greenhouses can be used to create antioxidant herbal remedies.     

Study of intracellular ion composition of yeast <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis> biomass

The ionic composition of the of the intracellular content of the alcohol yeast Saccharomyces cerevisiae R. 1039 biomass was studied for confirmation of their use perspectiveness as a mediator to enable the management the mineral content of food in the manufacture of food and feed additives. The ionic composition of the obtained extracts were identified using the method of capillary electrophoresis. It is found that the quantitative ion content in the cell extracts depends on the concentration of the nutrient medium. When the yeast S. cerevisiae R. 1039 was cultivated on the medium with the soluble solids concentration of 30%, the intracellular ion content in the extracts was 1.3 times higher than when the yeast was cultivated on 12% wort by increasing the concentration of chlorides, sulfates, formates, potassium ions, and calcium. The yield of the yeast S. cerevisiae R. 1039 biomass increased 1.6 times per unit of volume of the medium with increase of the soluble solids concentrations from 12% to 30%.     

Hyperspectral discrimination of foliar biotic damages in rice using principal component analysis and probabilistic neural network

Assessment of crop health status in real time could provide reliable and useful information for making effective and efficient management decisions regarding the appropriate time and method to control crop diseases and insect damage. In this study, hyperspectral reflectance of symptomatic and asymptomatic rice leaves infected by Pyricularia grisea Sacc, Bipolaris oryzae Shoem, Aphelenchoides besseyi Christie and Cnaphalocrocis medinalis Guen was measured in a laboratory within the 350–2?500 nm spectral region. Principal component analysis was performed to obtain the principal component spectra (PCs) of different transformations of the original spectra, including original (R), common logarithm of reciprocal (lg (1/R)), and the first derivative of original and common logarithm of reciprocal spectra (R′ and (lg (1/R))′). A probabilistic neural network classifier was applied to discriminate the symptomatic rice leaves from asymptomatic ones with the front PCs. For identifying symptomatic and asymptomatic rice leaves, the mean overall discrimination accuracies for R, lg (1/R), R′ and (lg (1/R))′ were 91.3, 93.1, 92.3 and 92%, and the mean Kappa coefficients were 0.771, 0.835, 0.829 and 0.82, respectively. To discriminate between disease and insect damage, the overall accuracies for R, lg (1/R), R′ and (lg (1/R))′ were 97.7, 98.1, 100 and 100%, and the Kappa coefficients were 0.962, 0.97, 1 and 1, respectively. These results demonstrated that hyperspectral remote sensing can discriminate between multiple diseases and the insect damage of rice leaves under laboratory conditions.     

Potato virus Y in the Russian Far East (epidemiology,strains, and damage)

Biological, physical, chemical, and antigenic characteristics of a potato virus Y are investigated. Significant strain diversity of this pathogen is found in the Far East of Russia. There are ten strains affecting potato and weeds. It is shown that PVYntm strain has a remote immunochemical affinity with common PVY strain. In the Far East of Russia, the most widespread aphid vectors of this virus are Myzus percicae Sulz., Aulacorthum solani Kalt., and Aphis gossypii Glov.     

Likely threat of the spread of race UG99 of <Emphasis Type="Italic">Puccinia graminis</Emphasis> f. sp. <Emphasis Type="Italic">tritici</Emphasis> on wheat in southeastern Russia

In 2013 and 2014, a Ug99 race virulent to the resistance gene Sr31 was revealed on spring bread wheat fields in Saratov oblast and its inoculum was collected under conditions of stem rust epiphytoties (with the fungus Puccinia graminis f. sp. tritici acting as an agent). In March to April 2015, when a set of soft wheat lines was artificially inoculated in a climatic chamber, the virulence of the collected inoculum to gene Sr31 was confirmed, and four monopustular clones were isolated. Based on the isolated monopustular clones of Puccinia graminis f. sp. tritici, an assessment for resistance of four lines of spring soft wheat to novel Sr-gene combinations was made.     

Genetic shifts in selection of hybrid offspring soybeans to economic-valuable signs

The article presents the importance of plant genetic hybrid shift in the elements of productivity, allowing the prediction of the conduct in the selection of promising lines obtained by interspecific hybridization spontaneous soybeans for further study in the selection process. The maximum shift of genetic selection on the basis of elements of efficiency in terms of the number of marked beans in combinations Volzhan × KZ-671, KZ-Rosinka × 1236, and Luch nadezhdy × KZ-6332 in terms of the mass of 1000 seeds only in the combination Luch nadezhdy × KZ-6332.     

Productivity and parameters of the adaptive ability and stability of pea varieties

The complex assessment has been given to the pea varieties permitted for use by productivity and parameters of the adaptive ability based on the results of their test in three natural and climatic zones in Tyumen oblast. The best varieties by average productivity have been found—in conditions of subtaiga, Yamal’skii; in northern forest steppe, Yamal; and in southern forest steppe, Omskii 9. All varieties had strong variability of productivity. The highest level of realization of productivity potential of varieties was noticed in the conditions of subtaiga. The highest general adaptive ability was peculiar to the varieties Yamal’skii, Agrointel, and Yamal; and the largest values of a variance of the specific adaptive ability were detected in the varieties Omskii 9, Batrak, and Tyumenets. By plasticity, the varieties were divided into three groups: weakly responsive to the improvement of conditions (b _i < 1)—Omskii 9 and Batrak; intensive, with high response to the improvement of conditions (b _i > 1)—Yamal and Agrointel; and plastic, changing the productivity of which fully corresponds changing the growth environment (b _i = 1)—Tyumenets and Yamal.     

Use of molecular markers of potato golden nematode resistance genes <Emphasis Type="Italic">H1</Emphasis> and <Emphasis Type="Italic">GRO1</Emphasis>

By means of DNA markers of potato golden nematode resistance genes H1 and Gro1, 109 Russian- and foreign-bred potato varieties are assessed. A sufficiently high level of coincidence of the presence of marker alleles with phenotypic resistance of potato varieties is revealed. However, not all resistant forms have specific amplification products. The use of DNA markers of only two genes H1 and Gro1 will not make it possible to completely replace mass laboratory testing, but it will make it possible to select potato forms resistant to this parasite by a simple and reliable method in a shorter time and thereby to considerably reduce the number of genotypes in the sample for further breeding.     

Genetic diversity analysis in <Emphasis Type="Italic">Plantago ovata</Emphasis> and some of its wild allies using RAPD markers

Plantago ovata, commonly called as the 'desert Indian wheat' is a cultivated and economically important plant of the genus Plantago, a large genus containing ~200 species. It yields Psyllium (Isabgol) which has several health benefits and applications in pharmaceutical, food and cosmetic industries. In view of the genetic uniformity, detection of variability has remained a challenge in this species as the plant lacks inherent variability and has a narrow genetic base. During the present study, Random amplified polymorphic DNA (RAPD) was used to determine genetic relationship and detect whatever little hidden variation exists in this species and some of its wild allies. Limited genetic variability was observed in P. ovata whereas; extensive genetic variability was seen in its wild allies. The genetic distances among different accessions of P. ovata and different species of Plantago, were used to generate a dendrogram.