河北荷斯坦牛体型性状的参数分析

[目的]估测河北荷斯坦牛线性体型性状参数,为育种提供参考.[方法]利用MTD-FREML软件,配合单性状和多性状动物模型,估测了河北675头荷斯坦牛23个体型线性性状的表型参数和遗传参数.[结果]体型各性状评分的平均数范围为2.16～8.24.体型线性性状遗传力的范围为0.07～0.61.体型总分的遗传力为0.49.结...     

Multi-trait animal model estimation of genetic parameters for linear type and gait traits in the Belgian warmblood horse

Genetic parameters for the height at withers, 27 linear type and six linear gait traits were estimated for the Belgian warmblood horse. Observations on 987 mares, mostly 3 years old, were analysed using a multi-trait animal model. The statistical model included appraiser, age and location (date × place of appraisal) as fixed effects. Genetic parameters were estimated using a canonical transformation and an expectation-maximization restricted maximum likelihood algorithm with an additional deceleration step. Estimates of heritability for the 33 linear traits were between 0.15 and 0.55. Heritability of the height at withers was 0.34 ± 0.06. Estimated genetic correlations ranged from −0.60 to 0.98 with an average SE of 0.10. The highest positive correlations were found among traits of walk and among traits of trot. Volume and the quality of legs were the most negatively correlated. Estimated genetic parameters indicated that the linear scoring system is a valuable tool to assess conformation. The full (co)variance matrix is now available for breeding value estimation to support selection for conformation and gaits.     

Estimation of genetic parameters of type traits in Asturiana de los Valles beef cattle breed

Ten type traits and a final score were analysed in 5868 records of the Asturiana de los Valles beef cattle breed. Traits were grouped into two classes: (i) traits scoring skeletal and muscular development and (ii) traits scoring adjustment to the breed standard. Heritabilities were moderate to low, ranging from 0.04 to 0.26. Genetic correlations among traits were, in general, in the same direction as, but higher than, phenotypic correlations. The genetic variability shown, in general, for the analysed traits would justify the inclusion of morphological assessment in the Asturiana de los Valles beef cattle breed sire selection programme. Main characteristics of the current type classification system are criticized. The knowledge of (co)variances among type and economically important productive and reproductive traits is recommended before revision of the classification methodology.     

Genetic analysis of the outcome of behavioural tests in puppies of the Hovawart breed

The objective of the present study was to evaluate the importance of genetic and environmental sources of variation for results of puppy behavioural tests in the Hovawart dog. For these analyses test results of 5,608 puppies born in 1995 to 2000 have been used. Variance component estimation was performed for the traits contact, optical and acoustical influences, hunting affinity, appearance and temperament using multivariate linear animal models and Restricted Maximum Likelihood (REML). The models included test-year-season, sex, litter size, region of kennel, inbreeding coefficient of the animal and the test inspector as fixed effects. Additive genetic effects of the animal, permanent environmental effect of the litter and the effect of the kennel were considered as random factors. An extended model included the additive genetic maternal effect. The region of the kennel was significant for all traits and the most important factor among the fixed effects. The sex of the puppy was significant for the temperament. Test-year-season was significant for hunting affinity, whereas the test inspector was significant for optical and acoustical influences. The effects litter size and inbreeding coefficient of the animal did not influence any of the traits significantly. The estimated heritabilities for the traits of puppy behaviour tests ranged from h2 = 0.02 to h2 = 0.13 with standard errors of up to 0.03. Common environment of the puppies significantly influenced all behaviour tests and the estimates were between c2 = 0.13 and 0.22. The maternal heritabilities amounted up to h2 = 0.04. The additive genetic correlations between the traits were always highly positive (r(g) = 0.6 bis 1).     

Genetic and phenotypic parameters and annual trends for growth and fertility traits of Charolais and Hereford beef cattle breeds in Kenya

This study estimated genetic and phenotypic parameters and annual trends for growth and fertility traits of Charolais and Hereford cattle in Kenya. Traits considered were birth weight (BW, kg), pre-weaning average daily gain (ADG, kg/day) and weaning weight (WW, kg); calving interval (CI, days) and age at first calving (AFC, days). Direct heritability estimates for growth traits were 0.36 and 0.21; 0.25 and 0.10; 0.23 and 0.13 for BW, ADG and WW in Charolais and Hereford, respectively. Maternal heritability estimates were 0.11 and 0.01; 0.18 and 0.00; 0.17 and 0.17 for BW, ADG and WW in Charolais and Hereford, respectively. Direct-maternal genetic correlations ranged between −0.46 and 1.00; −0.51 and −1.00; −0.47 and −0.39 for BW, ADG and WW in Charolais and Hereford, respectively. Genetic correlations ranged from −0.99 to unity and −1.00 to unity for growth and fertility traits respectively. Prospects for improvement of growth and fertility traits exist.     

Genetic parameters and single versus multi-trait evaluation of udder health traits

Abstract

Genetic parameters were estimated for lactation average somatic cell score (SCS) and clinical mastitis (CM) for the first three lactations of multiparous Finnish Ayrshire cows. A multi-trait linear sire model was used for estimation of covariance components, and the efficiencies of single- versus multi-trait multi-lactation (MT) sire evaluations were compared. Heritability of SCS and CM in the first three lactations ranged from 0.11 to 0.13 and 0.02 to 0.03, respectively. Within lactation, genetic correlations between SCS and CM ranged from 0.68 to 0.72. Within both traits, across-lactation genetic correlations were lowest between 1 and 3, and highest between 2 and 3, with estimates ranging from 0.75 to 0.86 and from 0.81 to 0.98 for CM and SCS, respectively. Residual and phenotypic correlations were low and ranged from 0.09 to 0.13 and from 0.10 to 0.13, respectively. The absolute difference between genetic and residual correlations was from 0.5 to 0.6. Within-lactation genetic correlations between traits that are much less than unity suggest a multi-trait model for genetic evaluation of mastitis resistance. Comparison of model prediction performance between single-trait (ST) and MT models using a data splitting method showed that the MT model was more stable in predicting breeding values in future records of animals. Especially, for young sires and CM, the SD of EBVs from the MT model was 14 to 23% higher than the ST model, indicating more effective use of information in terms of revealing more genetic variation.     

河北省西门塔尔牛体重体尺性状遗传参数分析

［目的］本研究旨在探究河北省西门塔尔牛体重和体尺性状的遗传参数,为育种提供参考。［方法］本研究以2015～2021年河北天和肉牛养殖有限公司266头西门塔尔牛的体重体尺性状为研究材料,包括体重性状及体高、十字部高、体斜长、胸围、腹围和管围等6个体尺性状,使用DMU软件采用AI-REML结合EM算法并配合动物模型对体重、体尺性状进行了遗传参数估计。［结果］结果表明：体重、体高、十字部高、体斜长、胸围、腹围和管围的遗传力分别为0.41、0.41、0.45、0.45、0.48、0.31和0.66。体重与体尺之间的遗传相关范围为0.20（体高）~0.79（胸围）,表型相关范围为0.14（十字部高）~0.23（胸围）;体尺性状间的遗传相关范围为-0.70（腹围和管围）~0.92（体高和十字部高）,表型相关范围为-0.10（腹围和管围）~0.94（体高和十字部高）。［结论］体重与体尺性状均属于高遗传力性状,体重及体尺性状间除管围外其他体尺性状间均呈较强的遗传正相关,在选育过程中加强对这些性状的选育,有利于提高西门塔尔牛的生长发育性能。     

基于系谱和基因组信息估计荷斯坦青年母牛体重性状遗传参数

旨在设计利用不同信息来源的模型估计荷斯坦后备牛不同月龄体重性状的遗传参数。本研究于2014—2020年测定并收集了7 122头荷斯坦牛32 338条0～12月龄体重数据,分别利用系谱信息(linear mixed model with pedigree relationship matrix, LM＿A)和系谱-基因组信息构建亲缘关系矩阵(linear mixed model with genotype-pedigree joint relationship matrix, LM＿H),基于母体效应动物模型估计初生重,基于是否考虑初生重作为协变量的单性状动物模型估计2～12月龄各月龄体重遗传力,并利用双性状动物模型估计初生重与其它月龄体重的遗传相关。结果显示,对于初生重,根据赤池信息量准则(Akaike information criterion, AIC),LM＿H方法的拟合程度显著优于LM＿A方法,但两种方法估计的遗传参数相差不大：直接遗传力分别为0.30和0.32,母体遗传力分别为0.08和0.09,个体直接遗传效应和母体遗传效应遗传相关系数分别为-0.65和-0.64;对于2～...     

Estimation of heritability and genetic correlation for behavioural responses by Gibbs sampling in the Thoroughbred racehorse

Genetic variation of the behaviour of racehorses is one of the major concerns for racehorse breeders. In this study, the heritabilities of behavioural responses to the inspections of conjunctiva, auscultation and blood sampling and the genetic correlations among them were estimated in the Thoroughbred racehorse. The estimation was done with Bayesian analysis with Gibbs sampling based on the univariate or bivariate threshold animal models. The behavioural responses were scored with four categories at the first entrance quarantine in Miho Training Center of Japan Racing Association from 1993 to 1995. The behavioural responses were treated as categorical or binary traits, with both showing similar results. The estimated heritabilities were in the range of 0.23–0.28, suggesting a genetic component in the variation on these traits. The estimated genetic correlations among the traits were very high (approximately 0.9), suggesting that these behavioural responses may be measures of the same trait. Because of the high genetic correlations, repeatability threshold model was applied assuming the responses to be a genetically identical trait measured with three different tests. The estimated heritabilities (approximately 0.23) were at the lower bound of the former estimates. The revealed high repeatabilities (0.97–0.98) suggest a strong contribution of the individual temperament on the behaviour of racehorses.     

Genetic correlations between performance traits and radiographic findings in the limbs of German Warmblood riding horses

Results of mare performance tests in the field (MPT-F) of 10,949 mares, mare performance tests at station (MPT-S) of 1,712 mares, and inspections of horses intended for sale at riding horse auctions (AU) of 4,772 horses were used to investigate genetic correlations between corresponding performance traits. Mare performance tests were held in 1995 to 2004 and auction inspections in 1999 to 2004. Scores on a scale from 0 to 10 were given for gaits under rider (walk, trot, canter), rideability (evaluated by judging commission and test rider), free-jumping (ability, style, total), and character. Radiography results of 5,102 Hanoverian Warmblood horses were used to investigate genetic correlations between performance traits and particular radiographic findings. The radiographic findings included osseous fragments in fetlock and hock joints, deforming arthropathy in hock joints, and distinct radiographic findings in the navicular bones, which were analyzed as binary traits, and radiographic appearance of the navicular bones, which was analyzed as a quasi-linear trait. Genetic parameters were estimated multivariately in linear animal models with REML using information on the horses radiographed and their contemporaries (n = 18,609). Heritability of performance traits ranged between 0.14 and 0.61, and heritability of radiographic findings between 0.14 and 0.33. Additive genetic correlations between corresponding performance traits were close to unity for MPT-F and MPT-S, ranged from 0.81 to 0.90 for MPT-F and AU, and were 0.75 to 0.92 for MPT-S and AU. Genetic correlations between performance and radiography results were mostly close to zero. Indications of negative additive genetic correlations were observed for deforming arthropathy in hock joints and canter, rideability evaluated by test rider, jumping traits and character, and osseous fragments in hock joints and character. Selection of horses for radiological health of their limbs will assist further genetic improvement of the performance of young Warm-blood riding horses.     

Genetic and phenotypic parameters for conformation and yield traits in three Swiss dairy cattle breeds

This study presents genetic parameters for conformation traits and their genetic and phenotypic correlations with milk production traits and somatic cell score (SCS) in three Swiss dairy cattle breeds. Data on first lactations from Holstein (67 839), Brown Swiss (173 372) and Red & White breeds (53 784) were available. Analysed conformation traits were stature and heart girth (both in cm), and linear scores of body depth, rump width, dairy character or muscularity, and body condition score (only in Holstein). A sire model, with relationships among sires, was used for all breeds and traits and variance components were estimated using AS‐REML. Heritabilities for stature were high (0.6–0.8), and for the linear type traits ranged from 0.3 to 0.5, for all breeds. Genetic correlations with production traits (milk, fat and protein yield) and SCS differed between the dairy breeds. Most markedly, stronger correlations were found between SCS and some conformation traits in Brown Swiss and Red & White, indicating that a focus on a larger and more ‘dairy’ type in these breeds would lead to increased SCS. Another marked difference was that rump width correlated positively with milk yield traits in Holstein and Red & White, but negative in Brown Swiss. Results indicate that conformation traits generally can be used as predictors for various purposes in dairy cattle breeding, but may require specific adaptation for each breed.     

Genetic parameters for milk fatty acids,milk yield and quality traits of a Holstein cattle population reared under tropical conditions

Information about genetic parameters is essential for selection decisions and genetic evaluation. These estimates are population specific; however, there are few studies with dairy cattle populations reared under tropical and sub‐tropical conditions. Thus, the aim was to obtain estimates of heritability and genetic correlations for milk yield and quality traits using pedigree and genomic information from a Holstein population maintained in a tropical environment. Phenotypic records (n = 36 457) of 4203 cows as well as the genotypes for 57 368 single nucleotide polymorphisms from 755 of these cows were used. Covariance components were estimated using the restricted maximum likelihood method under a mixed animal model, considering a pedigree‐based relationship matrix or a combined pedigree‐genomic matrix. High heritabilities (around 0.30) were estimated for lactose and protein content in milk whereas moderate values (between 0.19 and 0.26) were obtained for percentages of fat, saturated fatty acids and palmitic acid in milk. Genetic correlations ranging from −0.38 to −0.13 were determined between milk yield and composition traits. The smaller estimates compared to other similar studies can be due to poor environmental conditions, which may reduce genetic variability. These results highlight the importance in using genetic parameters estimated in the population under evaluation for selection decisions.     

Genetic associations between temperament and performance traits in Nellore beef cattle

The aim of this study was to estimate genetic associations between temperament and performance traits. Temperament was evaluated in yearling male and female Nellore cattle, using four traits: temperament score (TS), for assessing animals’ reactions in a corral pen (n = 25 691); movement score (MOV), for animals’ movements recorded inside the crush; crush score (CS), for animal's general reactivity inside the crush; and flight speed (FS), for the speed (in m/s) at which the animals exited the crush (n = 11 697, for the last three methods); for all the temperament traits, lower scores indicate animals with calmer temperament. Performance traits were visual scores for conformation (C), finishing precocity (P) and muscling (M) evaluated at yearlings, and average daily gain (ADG) was estimated from weaning to yearling. Bayesian inference using Gibbs sampling was applied to estimate (co)variance components and genetic and phenotypic parameters. Heritability estimates for the temperament traits ranged from 0.07 (CS) to 0.28 (FS). Genetic correlations of the temperament traits with ADG and C, P and M were negative and ranged from −0.02 to −0.31. Phenotypic correlations were negative and consistently lower than the genetic, ranging from −0.08 to −0.02. It was concluded that the temperament traits assessed had favourable genetic correlation estimates with the performance traits studied. However, indirect responses in temperament when selecting for higher ADG and visual scoring system of C, P and M, will be low.     

Effect of carcass price fluctuations on genetic and economic evaluation of carcass traits in Japanese Black cattle

The objectives of this study were 1) to investigate the effect of changes in carcass market prices due to bovine spongiform encephalopathy (BSE) occurrences on estimates of genetic parameters and economic weights for carcass traits; and 2) to compare direct and indirect approaches for prediction of genetic merit of Japanese Black cattle for profitability of their progeny. The direct approach utilized estimated breeding values of carcass prices, whereas in the indirect approach, selection indices were constructed as products of economic weights and breeding values of component traits. Data were composed of 80,191 carcass records divided into 5 periods based on changes in carcass prices as a result of occurrences of BSE in Japan and the United States. The periods ranged from a period before occurrence of BSE in Japan to a period of beef import restrictions and a rise in prices. Carcass traits analyzed included HCW, LM area, rib thickness, subcutaneous fat thickness, and marbling score (MS). Price traits included carcass unit price and carcass sale price. Estimates of heritability for price traits were moderate (0.32 to 0.46) and slightly sensitive to changes in carcass market prices. Genetic correlations of HCW and LM area with price traits increased and that between MS and carcass sale price decreased with period, whereas estimates of genetic correlation between MS and carcass unit price were high in all periods (0.96 to 0.98). Economic weights for carcass traits varied with periods because carcass prices were highly sensitive to economic importance of traits. Nevertheless, correlations between within-period breeding values for price traits estimated using direct and indirect approaches were high (0.92 to 0.99). This result indicates that selection realized by direct and indirect approaches will provide very similar results. A comparison among within-approach breeding values estimated in different periods showed that the largest differences in breeding values of sires for price traits were between the periods after occurrences of BSE in Japan and in the United States. Economic effects of BSE occurrences influenced the importance of carcass traits and economic merits of price traits through a change of carcass prices from period to period, irrespective of the approach taken in determining the genetic merit of breeding animals for profitability of their progeny.     

Estimation of genetic parameters for growth and feed utilization traits in Japanese Black cattle

Performance test results of 3250 sire candidates were used to estimate the genetic parameters of growth and feed utilization traits in Japanese Black cattle. Growth traits analyzed were six body measurements at the end of the performance test and daily gain (DG) during the test. Feed utilization traits were intakes and conversions of concentrate, roughage, digestible crude protein and total digestible nutrient (TDN). Genetic (co)variance components were estimated by the restricted maximum likelihood procedure using an expectation maximization algorithm under the two‐trait animal model. Heritabilities for growth traits ranged from 0.40 to 0.70 and for feed utilization traits from 0.21 to 0.74. Genetic correlations of DG were positive with feed intake (0.15–0.77) and negative with feed conversions (?0.63 to ?0.30). These relationships indicate that the selection based on DG improves feed efficiency but it simultaneously increases feed intake. Feed conversions showed genetic correlations ranging from ?0.09 to 0.03 with total available energy consumption, TDN intake. Thus the results suggested that feed conversions were not efficient selection criteria to decrease TDN intake and to improve comprehensive feed utilization ability.     

西门塔尔牛与我国地方黄牛的杂种优势预测分析

旨在利用覆盖全基因组和与性状相关的SNPs标记分析西门塔尔牛和地方黄牛两个亲本群体的遗传结构,通过亲本种群之间的遗传距离预测不同杂交组合在生长、胴体和肉质性状上的杂种优势.本研究选择来自内蒙古锡林郭勒盟乌拉盖管理区牧场的1 222头西门塔尔牛和8个地方黄牛品种190头共组成8个杂交组合,对亲本群体进行遗传结构分析.利用...     

Genetic associations between somatic cell score and pathogen‐specific subclinical mastitis in Norwegian Red cows

The aim of this study was to estimate heritabilities of and genetic correlations between pathogen‐specific subclinical mastitis (SCM) traits and lactation mean somatic cell score (LSCS) in Norwegian Red cattle. Based on data from 130 733 first‐lactation cows four binary pathogen‐specific SCM traits, Staphylococcus aureus, Streptococcus dysgalactiae, Streptococcus uberis and coagulase‐negative staphylococci SCM, were analysed together with unspecific SCM and LSCS using a multivariate sire model with threshold models for binary traits and a linear model for LSCS. Posterior means (SD) of heritabilities were 0.17 (0.01) for LSCS, 0.11 (0.01) for liability to unspecific SCM and ranged from 0.04 (Staph. aureus) to 0.14 (Strep. dysgalactiae) for liability to pathogen‐specific SCM. Genetic correlations were positive and moderate to high, ranging from 0.37 to 0.98. All genetic correlations except the one between LSCS and unspecific SCM were lower than 1, indicating that SCM caused by different pathogens can be considered as partly different traits.     

Genetic parameters for linear type traits in the Rendena dual‐purpose breed

The aim of the study was to estimate the genetic parameters for five composite traits and 20 individual type traits on 10 735 first‐parity Rendena dual‐purpose cows. Fixed effects included in the linear animal mixed models were herd‐year‐classifier, days in milk and age at first calving; the additive genetic effect of the animal was included as a random effect. Heritability estimates varied from 0.12 (feet) to 0.52 (stature). Genetic correlations between the individual body size traits were all ≥0.69; similar strong genetic correlations existed between traits describing similar morphological characteristics (e.g. mammary system, fleshiness). Many of the body size traits were negatively genetically correlated with animal fleshiness. Genetic trends showed that genetic merit for body size increased consistently over the last 10 years, while genetic merit for fleshiness declined. These results suggest that the characteristics of the dual‐purpose Rendena cattle are becoming more like specialized milk‐producing animals. Nonetheless, sufficient genetic variation exists to halt or reverse the deterioration in fleshiness.     

Genetic analyses of piglet survival and individual birth weight on first generation data of a selection experiment for piglet survival under outdoor conditions

Genetic parameters of piglet survival traits and birth weight were estimated on the first generation data of a selection experiment aimed at improving piglet survival using a multiple trait linear and threshold model. Data on 5293 piglets for survival at birth, at day one after birth and during the entire nursing period, as well as individual birth weight and litter size, were recorded in an outdoor production system. Genetic effects of piglet survival traits and birth weight were estimated based on threshold and Gaussian models, respectively, using a Bayesian approach. The statistical model included as fixed effects selection group, parity, gender, fostering, gestation length and month of farrowing and, alternatively, an adjustment for litter size. Direct genetic effects (i.e. the piglet's genetic potential) for piglet survival and birth weight were estimated separately, whereas maternal genetic and environmental effects could only be estimated for the given data structure in a combined litter effect. Posterior means of heritabilities for direct genetic effects of survival at birth, at first day after birth and the entire nursing period, as well as birth weight, were 0.08, 0.07, 0.08 and 0.20, respectively. Genetic correlations among survival traits were in the range of 0.29 to 0.40 and indicate that these traits were mainly attributable to different genetic effects. Genetic correlations between direct effects of survival traits and birth weight ranged between 0.18 and 0.23 and were reduced when weights of stillborn piglets were omitted in the analysis or the traits were adjusted for litter size. The magnitudes of direct genetic effects of survival traits are substantially higher than estimates in the literature, which may indicate that these traits have a higher genetic influence under outdoor conditions. The use of birth weight in the multiple trait estimation provided important information for the estimation of survival traits due to its favourable genetic correlations with survival, its high heritability and its high information content as a continuously measured trait.