甘肃中部及周边地区小麦条锈菌种群的遗传结构分析

为明确甘肃中部与周边地区小麦条锈菌种群的遗传结构及关系,利用SSR分子标记技术对采自甘肃、陕南、青海及新疆等7个地区共369份小麦条锈病菌标样的群体遗传结构进行了分析。结果表明,小麦条锈菌群体Nei’s基因多样性指数为0.39、Shannon信息指数为0.57,各地区条锈菌群体遗传多样性较为丰富,且在不同地区之间存在明显差异,7个条锈菌群体中以天水种群的遗传多样性相对较高,其Nei’s基因多样性指数为0.42、Shannon信息指数为0.61。该地区小麦条锈菌群体间和群体内都存在着一定的遗传分化,群体间遗传变异占总变异的2.24%,群体内遗传变异占总变异的97.76%。表明甘肃中部及周边地区小麦条锈菌群体存在一定的遗传分化,但遗传变异主要发生在群体内部;甘肃中部、陇南及陕南3地的小麦条锈菌种群遗传相似度较高,菌源交流密切。     

甘肃省甘谷县小麦条锈菌群体遗传结构分析

为明确我国小麦条锈菌Puccinia striiformis f. sp. tritici主要越夏地区的群体遗传结构及演变情况,利用SSR荧光检测技术,对甘肃省甘谷县2013—2015年期间连续5个小麦生长季采集的141株小麦条锈菌单孢系基因组DNA进行分子标记分析,对小麦条锈菌季节亚群的遗传多样性进行分析。结果表明,甘谷地区小麦条锈菌的遗传多样性丰富,有效等位基因数为1.71,Shannon信息指数为0.66,2014年秋季(2014A)亚群体的基因型多样性低于其余亚群体。分子变异方差分析结果显示,小麦条锈菌季节亚群体间变异仅占21%,变异主要出现在亚群体内部,表明甘谷地区各季节亚群体间遗传分化水平差异较小,小麦条锈菌群体在一个小范围内基本能维持稳定状态。主坐标分析(PCoA)、遗传分化、基因流以及共享基因型分析均表明2014年秋季(2014A)亚群体的遗传结构与相邻季节亚群体存在一定差异,表明越夏过程对甘谷地区个别年份小麦条锈菌群体周年稳定性造成较大的影响,越冬过程对小麦条锈菌群体的影响相对较小,春季受外来菌源干扰的可能性较低。     

基于毒性表型与微卫星标记的云南省条锈病菌群体遗传分析

为明确云南省条锈菌群体结构和遗传多样性水平,利用19个中国鉴别寄主和11对微卫星(simple sequence repeat,SSR)标记引物对采自云南省大理、曲靖、文山、昭通4个市的88个菌系进行了毒性表型分析和分子基因型分析。毒性表型分析结果表明,云南省条锈菌群体Nei’s基因多样性指数为0.17,Kosman指数为0.22,云南省条锈菌群体毒性结构复杂;菌系以Hybrid 46类群(77.3%)和贵农22类群(17.0%)为主,并且均不能侵染鉴别寄主中四和Triticum spelta album。分子基因型分析结果表明,云南省条锈菌整体上香农信息指数为0.63,分子遗传多样性比较丰富;大理市菌系香农信息指数为0.64,分子遗传多样性最丰富;文山市菌系香农信息指数为0.35,分子遗传多样性最低。聚类分析结果表明,云南省西部大理市菌系明显不同于云南省东部曲靖市、昭通市、文山市的菌系,昭通市菌系和曲靖市菌系毒性结构和基因型结构基本相同,表明云南省东、西部条锈菌群体遗传分化程度较高,是2个相对独立的流行区域。     

陕西省小麦条锈菌群体遗传结构分析

 利用TP-M13-SSR自动荧光检测技术,对陕西省小麦条锈菌群体遗传结构进行了分析。研究结果显示,在物种水平上,陕西省小麦条锈菌群体Nei’s基因多样性指数（H）为0.18、Shannon 信息指数（I）为0.29,表明该省条锈菌群体遗传多样性较为丰富。同时,条锈菌群体遗传多样性在地区之间也存在明显的差异,在7个条锈菌群体中,宁强种群遗传多样性相对较高（H为0.18,I为0.28）。AMOVA分析显示,陕西省小麦条锈菌在地区间、种群间和群体内的遗传分化分别为：12.26%、10.88%和76.86%,表明陕西省小麦条锈菌群体存在一定的遗传分化,但遗传变异主要发生在群体内部。     

2010-2011年小麦条锈菌群体的温度敏感性与毒性及遗传多样性的关系

为了明确小麦条锈菌毒性、遗传多样性以及温度敏感性三者之间的关系,本研究利用21个已知抗条锈病基因近等基因品系对2010-2011年生长季采自6个省市78株已知温度敏感性(ET50)的小麦条锈菌群体进行毒性鉴定,并利用AFLP技术对其进行遗传多样性分析。苗期毒性鉴定结果表明,不同省市小麦条锈菌群体的毒性基因多样性存在一定差异,甘肃菌株群体毒性多样性指数H值最高,为0.269 3,云南菌株群体最低,为0.150 4。遗传多样性结果显示,6省市小麦条锈菌群体遗传多样性指数H值范围在0.125 5~0.165 3之间,遗传一致度GI为0.964 7~0.987 2,遗传距离GD为0.012 9~0.036 0。三者的相关性分析表明,条锈菌群体毒性多样性与平均ET50显著负相关,与ET50变异系数正相关,而与遗传多样性没有显著的相关关系。     

小麦抗条锈品种遗传多样性的SSR分析

［目的］ 利用SSR标记分析我国几大小麦产区主栽品种中抗锈品种的遗传多样性,为小麦抗条锈育种亲本材料的选择提供参考。［方法］ 以当前条锈菌优势小种接种成株期小麦,从几大小麦产区主栽品种中筛选出抗条锈品种。然后利用SSR标记对筛选出的抗锈品种的遗传多样性进行分析。［结果］ 27对SSR引物在上述抗锈品种中共检测到104个等位变异,平均为3.85个;引物的多态信息含量（PIC）在0.210~0.712之间,平均为0.455;抗锈品种间遗传相似系数平均为0.723,表明筛选出的抗锈品种遗传多样性较低,亲缘较近。［结论］ 聚类分析的结果将抗锈品种分为了4个类群,类群的分布与亲缘的远近和品种的地域有一定的相关性。     

基于KASP技术的小麦条锈菌SNP分子标记开发与评价

为开发用于小麦条锈菌Puccinia striiformis f. sp. tritici群体遗传研究的竞争性等位基因特异性PCR-单核苷酸多态性(kompetitive allele specific PCR-single nucleotide polymorphism,KASPSNP)标记,以中国小麦条锈菌流行小种CYR32的基因组为参考,与美国小麦条锈菌流行小种PST78和印度小麦条锈菌流行小种38S102的基因组进行比对,根据比对到的SNP位点设计KASP-SNP引物,用64个中国小麦条锈菌标样对其进行筛选,同时用13对多态性引物组成的简单重复序列(sim‐ple sequence repeat,SSR)分子标记分析这64个标样,并利用Powermarker 3.25和Structure 2.3软件通过多态性指数和群体遗传结构分析来评价KASP-SNP和SSR两种分子标记。结果显示,共比对到29 929个SNP位点,设计出462对KASP-SNP引物,经64个中国小麦条锈菌标样筛选到43对多态性较好的引物,所开发的这43对KASP-SNP引物多态性信息含量指数平均为0.346,基因多样性指数平均为0.420,而SSR引物的2种指数分别为0.237和0.265,前者较后者分别高出46.0%和58.5%。2种标记结果的群体遗传结构分析可得到类似结果,最佳聚类数K值都为4,云南菌系是遗传结构相对最简单的菌系,湖北菌系是遗传结构相对最复杂的菌系,但个别菌株的遗传划分存在较大差异。表明本研究开发的KASP-SNP分子标记多态性较SSR分子标记更加丰富,具有较好的应用前景。     

新疆伊犁州小麦条锈菌生理小种鉴定及毒性分析

伊犁州是新疆小麦条锈病重灾区, 对该地区开展小麦条锈菌生理小种监测意义重大?本研究通过对2020年采自新疆伊犁4县的149份小麦条锈菌样品进行生理小种监测, 以期明确该地区小麦条锈菌生理小种组成及毒性情况?结果表明, 共监测到28个生理小种, 其中CYR 33?Su 11-1?Su 11-12?CYR 32及CYR 34出现频率较高, 分别为14.09%, 12.75%, 8.05%, 8.05%和7.38%; 水源11类群为优势类群, 出现频率高达44.30%?对抗条锈病基因Yr1?YrA?Yr3?Yr6?YrSu?Yr9的毒性频率均大于70%, 表明这些基因在伊犁州抗性基本丧失?新疆伊犁州4县小麦条锈菌毒性多样性分析显示, Nei’s 遗传多样性指数为0.34, Shannon 信息指数为0.50, 表明伊犁州条锈菌毒性多样性水平较高, 毒性组成丰富; 小麦条锈菌毒性相似系数在0.92~1.00, 其中伊宁县和巩留县的样品遗传距离最近, 察布查尔县与其他3县样品遗传距离最远?因此, 新疆伊犁州地区抗锈育种应以抗CYR 33和Su 11-1为主, 兼顾抗Su 11-12?CYR 32和贵农22类群中其他类型?另外不同县区应合理进行抗病基因布局, 以期实现小麦条锈病的区域间联合防治?     

云南小麦条锈菌群体对18个抗条锈近等基因系的毒性分析

为监测云南省小麦条锈菌群体毒性及小麦抗条锈基因的有效性动态,2016年采用18个抗条锈近等基因系鉴别寄主对云南省9个州市的136个小麦条锈菌株进行毒性分析,并按八进制法对小种进行命名。结果表明,云南省小麦条锈菌群体毒性丰富,共鉴定出64个小种类型,其中居于前2位的小种是550273和550073,出现频率分别为28.68%和11.76%,是本年度优势小种;其它小种出现频率均在4.41%以下,为次要小种。条锈菌群体对Yr5、Yr10、Yr15、Yr32四个抗条锈基因的毒力频率均为0,对Yr24、Yr Tr1、Yr8、Yr17四个抗条锈基因的毒力频率在0.74%~11.76%之间,表明这8个基因是云南省当前有效的抗条锈基因;对Yr27的毒力频率为52.94%,对Yr1、Yr6、Yr7、Yr9、Yr43、Yr44、Yr SP、Yr Exp2、Yr Tye九个抗条锈基因的毒力频率为77.94%~91.91%,表明这10个抗条锈基因的抗性已减缓或丧失,说明这些基因在云南省已失效。     

黄淮麦区小麦全蚀病菌群体的遗传多样性分析

为了解小麦全蚀病病菌的群体组成和遗传多样性,采用8对多态性较好的微卫星标记,对我国黄淮麦区的116个小麦全蚀病菌株进行了分析。8个SSR标记的平均等位基因数为4.25个,多态性信息含量的平均值为0.66。供试菌株的平均有效等位基因数和基因遗传多样性指数分别为1.46和0.27,漯河群体的遗传多样性水平最高,周口群体最低。不同群体间遗传距离均较小,为0.0199~0.1153,其中徐州和周口群体间的遗传距离相对较大,而周口和驻马店群体间的遗传距离相对较小。分子方差分析结果显示,小麦全蚀病菌群体间和群体内均存在着一定的遗传分化,群体间的遗传变异占总变异的10%,群体内遗传变异占90%。6个群体间的基因流为3.5。根据SSR多态性,对来源不同菌株的UPGMA聚类分析结果显示,小麦全蚀病菌群体结构与地理来源有一定的关系。     

西藏林芝与内地小麦条锈菌分子群体遗传结构及菌源关系

 2009-2010年春季,先后从甘肃、四川、陕西和西藏四省的29个县(市)采集到1 391份小麦条锈病标样,繁殖获得961个菌株,利用SSR分子标记进行群体遗传分析结果表明:甘肃天水、平凉和陇南,陕西宝鸡及汉中,四川阿坝和广元等地条锈菌的遗传多样性比较丰富,而四川宜宾及凉山、西藏林芝的遗传多样性水平相对较低。利用Arlequin软件中的AMOVA方法分析结果表明,小麦条锈菌的遗传变异主要存在于群体内部。内地各种群之间菌源交流频繁(Nm＞4),西藏与内地菌源交流很少(Nm＜1)。采用Structure及聚类分析表明,陕西宝鸡与甘肃平凉间,陕西汉中、甘肃陇南、甘肃天水及四川广元间,存在着频繁的菌源交流关系,四川宜宾和凉山与四川阿坝、陕西汉中和甘肃陇南间存在着菌源交流关系。而西藏与内地间几乎没有菌源交流。初步认为西藏林芝小麦条锈菌可能是一个相对独立的遗传群体。     

小麦条锈菌冬孢子生物学特性研究进展

由小麦条锈菌引起的小麦条锈病是我国广大麦区的严重病害,研究其冬孢子产生原因与作用对于解析该病菌的生活史及遗传变异机制至关重要.通过对国内外相关研究成果的整理,综述了小麦条锈菌冬孢子的形态特征、生物学特性、寄主范围及其作用与功能等方面的研究进展.     

欧洲小麦品种Mega抗条锈病基因的遗传分析及分子标记

 本研究表明欧洲小麦品种Mega对我国小麦条锈病重要流行小种CYR30、CYR31、CYR32、Su-4和Su-14在苗期都具有良好的抗病性。采用小麦条锈菌小种CYR30对Mega与感病小麦品种铭贤169杂交的F₁、F₂和BC₁代及双亲进行苗期抗病性遗传分析,结果表明,Mega对CYR30的抗性由1对显性基因独立控制。采用SSR标记技术对其携带的抗性基因进行分子标记,在237对SSR引物中,发现位于5BL上的2个SSR引物位点Barc232、Wmc640在双亲和抗、感池间能扩增出稳定的特异性片段,与抗病基因连锁的遗传距离分别是3.7cM和8.6cM,暂命名为YrMe。本研究结果为科学利用Mega抗条锈基因培育抗病品种提供了依据。     

小麦-滨麦易位系M8657-1抗条锈病基因遗传分析和分子标记

 M8657-1, one of the wheat translocation lines derived from Leymus mollis Trin. Hara, is possessed of effective resistance at all stages to Su-ll and other dominant races of Puccinia striiformis f. sp. tritici in China. Seedlings of the parents, F₁, and F₂ progeny derived from the cross of M8657-1 (resistant) Mingxian169 (susceptible) were inoculated with Su-ll in greenhouse to identify and map the probable new stripe rust resistance gene. The results suggested that the stripe rust resistance in M8657-1 was conferred by a pair of recessive genes. Simple sequence repeat (SSR) technique was used to detect molecular marker associated with the resistance gene:208 pairs of wheat SSR primers were used to screen the two parents, as well as resistant and susceptible bulks and then three SSR markers were selected for genotyping the F₂ population. The geue, temporarily designated as YrLml, was found to be located on the chromosome 7DL and flanked by three SSR markers GDM67, WMC150 and WMC671, with the genetic distance of 5.0, 9.7 and 11.8cM, respectively.     

Inheritance and molecular mapping of barley genes conferring resistance to wheat stripe rust

ABSTRACT Most barley cultivars are resistant to stripe rust of wheat that is caused by Puccinia striiformis f. sp. tritici. The barley cv. Steptoe is susceptible to all identified races of P. striiformis f. sp. hordei (PSH), the barley stripe rust pathogen, but is resistant to most P. striiformis f. sp. tritici races. To determine inheritance of the Steptoe resistance to P. striiformis f. sp. tritici, a cross was made between Steptoe and Russell, a barley cultivar susceptible to some P. striiformis f. sp. tritici races and all tested P. striiformis f. sp. hordei races. Seedlings of parents and F(1), BC(1), F(2), and F(3) progeny from the barley cross were tested with P. striiformis f. sp. tritici races PST-41 and PST-45 under controlled greenhouse conditions. Genetic analyses of infection type data showed that Steptoe had one dominant gene and one recessive gene (provisionally designated as RpstS1 and rpstS2, respectively) for resistance to races PST-41 and PST-45. Genomic DNA was extracted from the parents and 150 F(2) plants that were tested for rust reaction and grown for seed of F(3) lines. The infection type data and polymorphic markers identified using the resistance gene analog polymorphism (RGAP) technique were analyzed with the Mapmaker computer program to map the resistance genes. The dominant resistance gene in Steptoe for resistance to P. striiformis f. sp. tritici races was mapped on barley chromosome 4H using a linked microsatellite marker, HVM68. A linkage group for the dominant gene was constructed with 12 RGAP markers and the microsatellite marker. The results show that resistance in barley to the wheat stripe rust pathogen is qualitatively inherited. These genes might provide useful resistance against wheat stripe rust when introgressed into wheat from barley.     

Genetic Diversity in Australian Populations of Puccinia graminis f. sp. avenae

ABSTRACT Sequence-tagged microsatellite profiling was used to develop 110 microsatellites for Puccinia graminis f. sp. tritici (causal agent of wheat stem rust). Low microsatellite polymorphism was exhibited among 10 pathogenically diverse P. graminis f. sp. tritici isolates collected from Australian cereal growing regions over a period of at least 70 years, with two polymorphic loci detected, each revealing two alleles. Limited cross-species amplification was observed for the wheat rust pathogens, P. triticina (leaf rust) and P. striiformis f. sp. tritici (stripe rust). However, very high transferability was revealed with P. graminis f. sp. avenae (causal agent of oat stem rust) isolates. A genetic diversity study of 47 P. graminis f. sp. avenae isolates collected from an Australia-wide survey in 1999, and a historical group of 16 isolates collected from Australian cereal growing regions from 1971 to 1996, revealed six polymorphic microsatellite loci with a total of 15 alleles. Genetic analysis revealed the presence of several clonal lineages and subpopulations in the pathogen population, and wide dispersal of identical races and genotypes throughout Australian cereal-growing regions. These findings demonstrated the dynamic population structure of this pathogen in Australia and concur with the patterns of diversity observed in pathogenicity studies.     

Attempted somatic hybridization of Puccinia striiformis f. sp. tritici and P. striiformis f. sp. hordei

Attempts were made to produce somatic hybrids between isolates of Puccinia striiformis f. sp. tritici and f. sp. hordei. A mixed infection was produced on a common susceptible barley host, Fong Tien, using white-spored isolates of P. striiformis f. sp. tritici and yellow-spored isolates off. sp. hordei. Selection was made for non-parental spore colour on selective wheat and barley hosts, and variants thus isolated were analysed for virulence markers, and for isozyme and double-stranded RNA (dsRNA) markers, all of which clearly differentiated the parental isolates. Two white-spored (non-parental) isolates were found on the selective barley host which otherwise resembled the parental f. sp. hordei isolate in virulence, isozyme and dsRNA markers. The most likely explanation of the origin of these isolates is mutation to white spore colour in the f. sp. hordei isolate.     

Emergence of a novel population of Puccinia striiformis f. sp. tritici in Eastern United States

The geographic range of stripe rust of wheat, caused by Puccinia striiformis f. sp. tritici, has increased dramatically since 2000 in the United States. Yield losses to the disease have been most severe in the eastern United States, where measurable yield loss had been rare prior to 2000. The objective of this study was to examine the phenotypic and genotypic variation among isolates of P. striiformis f. sp. tritici collected from populations in the eastern United States before and since 2000. Virulence phenotype and amplified fragment length polymorphism (AFLP) markers were used to examine 42 isolates collected between 1960 and 2004. In addition, the genetic structure of 59 isolates collected in 2005 using a hierarchical sampling strategy was examined. The data indicated that the contemporary isolates (collected since 2000) were very distinct from older isolates (collected before 2000) based on virulence and AFLP markers, and that the old population prevalent before 2000 may have been replaced by the contemporary population. The old and new populations appear to be genetically distinct and may represent an exotic introduction rather than a mutation in isolates of the old population.     

2010年西藏小麦条锈菌生理小种群体结构与分析

西藏地区是中国相对独立的小麦种植区,小麦条锈病是西藏冬小麦上最重要的病害.长期以来,对西藏小麦条锈菌生理小种群体结构缺乏全面系统的了解.为了弄清西藏小麦条锈菌生理小种群体结构,本研究从西藏地区小麦条锈病发生的关键地区采集并鉴定了小麦条锈菌标样261份.西藏地区小麦条锈菌群体结构复杂,小种类型数多,主要优势小种以CYR32和CYR33为主,水源11类群为优势类群,Hybrid46类群结构简单,未发现CYR32以外的类型;CYR32之前的小种数较多、其中CYR17、CYR20、CYR31出现频率较高;西藏小麦条锈菌群体结构与内地有着较大的相似性,同时也有其自身的独特性,表现西藏小麦条锈菌优势小种组成与四川、云南两省相似,与青海省差异较大.推测西藏地区小麦条锈菌与四川和云南省存在较密切的菌源交流,与青海省交流较少.     

Genetic analysis and molecular mapping of wheat genes conferring resistance to the wheat stripe rust and barley stripe rust pathogens

ABSTRACT Stripe rust is one of the most important diseases of wheat and barley worldwide. On wheat it is caused by Puccinia striiformis f. sp. tritici and on barley by P. striiformis f. sp. hordei Most wheat genotypes are resistant to P. striiformis f. sp. hordei and most barley genotypes are resistant to P. striiformis f. sp. tritici. To determine the genetics of resistance in wheat to P. striiformis f. sp. hordei, crosses were made between wheat genotypes Lemhi (resistant to P. striiformis f. sp. hordei) and PI 478214 (susceptible to P. striiformis f. sp. hordei). The greenhouse seedling test of 150 F(2) progeny from the Lemhi x PI 478214 cross, inoculated with race PSH-14 of P. striiformis f. sp. hordei, indicated that Lemhi has a dominant resistance gene. The single dominant gene was confirmed by testing seedlings of the F(1), BC(1) to the two parents, and 150 F(3) lines from the F(2) plants with the same race. The tests of the F(1), BC(1), and F(3) progeny with race PSH-48 of P. striiformis f. sp. hordei and PST-21 of P. striiformis f. sp. tritici also showed a dominant gene for resistance to these races. Cosegregation analyses of the F(3) data from the tests with the two races of P. striiformis f. sp. hordei and one race of P. striiformis f. sp. tritici suggested that the same gene conferred the resistance to both races of P. striiformis f. sp. hordei, and this gene was different but closely linked to Yr21, a previously reported gene in Lemhi conferring resistance to race PST-21 of P. striiformis f. sp. tritici. A linkage group consisting of 11 resistance gene analog polymorphism (RGAP) markers was established for the genes. The gene was confirmed to be on chromosome 1B by amplification of a set of nullitetrasomic Chinese Spring lines with an RGAP marker linked in repulsion with the resistance allele. The genetic information obtained from this study is useful in understanding interactions between inappropriate hosts and pathogens. The gene identified in Lemhi for resistance to P. striiformis f. sp. hordei should provide resistance to barley stripe rust when introgressed into barley cultivars.