The potential of high-resolution BAC-FISH in banana breeding

The genetic complexity in the genus Musa has been subject of study in many breeding programs worldwide. Parthenocarpy, female sterility, polyploidy in different cultivars and limited amount of genetic and genomic information make the production of new banana cultivars difficult and time consuming. In addition, it is known that part of the cultivars and related wild species in the genus contain numerous chromosomal rearrangements. In order to produce new cultivars more effectively breeders must better understand the genetic differences of the potential crossing parents for introgression hybridization, but extensive genetic information is lacking. As an alternative to achieve information on genetic collinearity we make use of modern chromosome map technology known as high-resolution fluorescent in situ hybridization (FISH). This article presents the technical aspects and applications of such a technology in Musa species. The technique deals with BAC clone positioning on pachytene chromosomes of Calcutta 4 (Musa acuminata ssp. burmanicoides, A genome group, section Eumusa) and M. velutina (section Rodochlamys). Pollen mother cells digestion with pectolytic enzymes and maceration with acetic acid were optimized for making cell spread preparations appropriate for FISH. As an example of this approach we chose BAC clones that contain markers to known resistance genes and hybridize them for establishing their relative positions on the two species. Technical challenges for adapting existing protocols to the banana cells are presented. We also discuss how this technique can be instrumental for validating collinearity between potential crossing parents and how the method can be helpful in future mapping initiatives, and how this method allows identification of chromosomal rearrangements between related Musa species and cultivars.     

Genetic variability in melon based on microsatellite variation

A set of 18 simple‐sequence repeat (SSR or microsatellite) markers was used to study genetic diversity in a collection of 27 melon (Cucumis melo L.) accessions, representing a broad range of wild and cultivated melons. The materials studied were highly polymorphic for SSRs and a total of 114 alleles were detected (average of 6.3 alleles per locus). Cluster analysis suggests the division of these accessions into two major groups, largely corresponding to the division of C. melo in the two subspecies agrestis and melo. The assignment of the accession to the subspecies was generally in agreement with published reports, except for those corresponding to the ‘dudaim’ and ‘chito’ cultivar groups, which, according to the observed SSR variability, should be included in subspecies agrestis. Based on cluster analysis, five groups of accessions were defined. The two most divergent groups include mainly accessions from the Mediterranean which form one group, and accessions from China, Japan, Korea and India forming the other. Both groups shared a low level of intra‐accession variation compared with the other groups, which suggests an erosion of their genetic variability because of drift and/or inbreeding. The remaining accessions, mainly from Central Africa and India, were more variable and may be an important source of genetic variation for melon breeding.     

Genetic variability and heterotic groups of Brazilian popcorn populations

The development of successful advanced lines and cultivars in maize is dependent on parental selection and assignment to defined heterotic groups. So, the objectives of this study were to evaluate genetic variability and identify heterotic groups among Brazilian popcorn varieties. Thus, diallel crosses of advanced generations of the popcorn hybrids, IAC 112 and Zélia, and of three open-pollinated popcorn varieties, RS 20, Branco, and SAM were performed. Ten hybrid combinations, the five parents, and five check treatments were arranged in a block design with four replicates in two tropical-zone locations (CWb climate). Both additive and non-additive effects were important for grain yield, plant height, ear height, and husk cover. For popping expansion, only the additive effects were important. Hybrid combinations between the local variety (Branco) and F₂ populations (IAC 112 and Zelia) resulted in the third and fourth highest values for popping expansion. The best grain yields were obtained with hybrid combinations involving SAM. Cultivars Zélia, IAC 112, and RS 20 increased popping expansion, whereas cultivar Branco increased grain yield of hybrid combinations. The following conclusions may be drawn: Brazilian popcorn populations have reduced heterosis and genetic variability to popping expansion in relation commercial cultivars; there is genetic variability among Brazilian popcorn populations that allows the exploitation of additive and non-additive effects for grain yield; it is possible to increase grain yield by using local varieties; but it would be difficult to obtain commercial hybrids from local varieties because they have poor performance for popping expansion.     

Genetic characterization of banana cultivars (Musa spp.) from Brazil using microsatellite markers

Flavonoids, in particular the anthocyanins,are responsible for flower colour in manyspecies. The dihydroflavonols represent abranch point in flavonoid biosynthesis,being the intermediates for production ofboth the coloured anthocyanins, through theaction of the enzyme dihydroflavonol4-reductase (DFR), and the colourlessflavonols, produced by flavonol synthase(FLS). In this study the white-flowered,flavonol accumulating Mitchell line ofpetunia was used as a model to examine theinteraction between DFR and FLS enzymeactivities and possibilities forredirecting flavonoid biosynthesis awayfrom production of flavonols and towardsanthocyanins. Introduction of a 35SCaMV-DFR sense transgene construct causedthe production of anthocyanins, resultingin a pink-flowered phenotype. Furthermore,inhibition of FLS production throughintroduction of an FLS antisense RNAconstruct also led to anthocyaninproduction and a pink-flowered phenotype. A combination of both transgenes gave thehighest level of anthocyanin formation. Anthocyanins were produced in the DFR-senseand FLS-antisense transgenic lines in spiteof the greatly reduced levels of geneexpression in the Mitchell line for threeenzymes late in anthocyanin biosynthesis,anthocyanindin synthase, UDP-glucose:flavonoid 3-O-glucosyltransferase andUDP-rhamnose: anthocyanidin-3-glucosiderhamnosyltransferase. Thus, the level ofgene activity required for visibleanthocyanin formation is much lower thanthe high levels normally induced duringpetal development. Altering the balancebetween the DFR and FLS enzyme activities,using genetic modification, may be a usefulstrategy for introducing or increasinganthocyanin production in target ornamentalspecies.     

Genetic variability measures among Bromus catharticus Vahl. populations and cultivars with RAPD and AFLP markers

The objectives of this study were to optimize RAPD and AFLP techniques in B. catharticus, and to determine the genetic variability of populations and commercial prairie grass cultivars with the aforementioned molecular markers. Two populations with contrasting morphological characteristics were evaluated from individual and bulked DNA samples using RAPD markers. Both analyses showed a similar information about inter population variability. Each accession was sampled by a single leaf bulk of 10 plants. Accession similarities were established with 276 RAPD and 714 AFLP bands using Jaccard similarity coefficient. The dendrogram of the accessions using RAPD markers showed that they shared high similarity values (>94%). A similar result was obtained with AFLP markers (similarity values >98%), revealing a narrow genetic basis in the analyzed accessions. Consequently, molecular characterization of germplasm should be considered in addition to morphological criteria, to choose the parental genotypes for breeding programs of this forage crop. The AFLP technique was more efficient to detect DNA polymorphism in our experiments and unique fingerprints were detected for all the accessions. RAPD is a simple and non expensive technique, suitable to estimate genetic similarity. This revised version was published online in August 2006 with corrections to the Cover Date.     

Genetic variability and interrelationships of seed yield and yield components in switchgrass

Information on the genetic variability of seed yield and yield components is limited and no information is available on correlations among seed yield and yield components and direct and indirect effects of the yield components on seed yield in switchgrass, Panicum virgatum L. Accordingly, we conducted replicated experiments at Chickasha and Perkins, OK, in 1998 involving 11 lowland type switchgrass populations to assess genetic variation for seed yield and yield components, quantify interrelationships among them, and determine direct and indirect effects of yield components on seed yield through path coefficient analysis to identify traits for indirect selection of seed yield. Significant (P ≤ 0.01) variation existed among the 11 populations over locations for percent seed set and 100-seed weight. Seed yield/plant and the seed yield components panicle number/plant, spikelet number/panicle, and seed number/panicle had significant (P ≤ 0.05) population × location interactions, indicating substantial environmental influence on these traits for these populations. Accordingly, data for these traits were analyzed separately for each location revealing significant (P ≤ 0.01) differences among populations at both locations for each of these traits. Phenotypic correlation between seed yield/plant and seed number/panicle was positive (r = 0.76** at Chickasha and r = 0.72** at Perkins). Path coefficient analyses revealed that seed number/panicle had the highest positive direct effect on seed yield at both locations. Ample genetic variability was present among the switchgrass populations studied to allow breeding improvement of seed yield. Selection for increased seed number/panicle would be the most effective means of indirectly selecting for higher seed yield within this germplasm. Correlation and path coefficient analyses among biomass yield, seed yield, and harvest index indicated that, at least within the switchgrass germplasm studied, it would be possible to breed switchgrass cultivars with enhanced biomass yielding ability and sufficient seed production capability for their commercial propagation.     

A contribution to explaining the potential variability of vicia faba L.

The author describes several breeding experiments with broad beans (Vicia faba var. major L.) conducted over several years.Apart from local varieties a few selections were included in the trials. In the last few years a number of plants were bagged and the progenies carefully selected.The trials learned that the best procedure of maintaining the productivity level is a continuous positive selection in local varieties by increasing the best plats only and keeping the material as pure as possible. If selection is discontinued for one year only, the yield immediately falls back to its original level.

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Samenvatting Schrijver geeft een verslag van diverse proeven met veldbonen.Behalve de plaatselijk geteelde landrassen werden enkele selecties in de proeven opgenomen. Ieder jaar werden een aantal planten ingehuld en de nakomelingschappen zorgvuldig apart gehouden.De proeven toonden aan dat de beste methode om het opbrengstniveau te handhaven is een ononderbroken selectie in landrassen door alleen de beste planten te vermeerderen en het materiaal zo zuiver mogelijk te houden. Als men de selectie slechts één jaar achterwege laat valt de opbrengst direct terug op haar oorspronkelijk niveau.

     

Genetic variability and interrelationship of traits in the industrial oil crop Vernonia galamensis

Vernonia galamensis is a wild plant from the family Asteraceae which is endemic to East Africa and has the potential to become a new oil crop for industrial uses. Its seed oil is rich in vernolic acid, a fatty acid of high interest for oleochemical applications. However, a breeding program for Vernonia galamensis cultivars with high seed and oil yields requires knowledge about the genetic variability of traits that influence seed and oil production. This study was undertaken to examine phenotypic and genotypic variability, broad-sense heritability, genetic advance under selection and interrelationships of agronomic and seed quality traits. A total of 122 Vernonia accessions, 115 collected from different regions of Ethiopia and seven introduced, were grown at two locations in Ethiopia (Alemaya and Babile), in 2001/2002 and were analyzed for 20 traits including phenology, yield, yield components, and seed quality with special emphasis on fatty acid composition. The collections exhibited significant variation for all traits except for days to emergence. Genotypes and locations interacted significantly (P 0.01) for all traits. Broad-sense heritability estimates ranged from 11% (for days to emergence) up to 79% (for days to maturity). Expected genetic advance was between 1.3% (for days to emergence) and 44.8% (for seed oil yield). Genetic correlation analysis revealed that seed yield per plant is highly and positively correlated with seed weight and head number; highly significant and negative correlations (r = –0.59, –0.82, –0.85, and –0.89) were found between vernolic acid and palmitic, stearic, oleic, and linoleic acid, respectively. Highly significant positive correlations (r = 0.55, 0.44, and 0.36) were observed between vernolic acid and oil content, meal protein content and seed oil yield, respectively. Path-coefficient analysis indicated seed weight and secondary head number to be the most important components of seed yield per plant. Vernolic acid, oleic acid and linoleic acid had positive direct effects and stearic acid had a negative direct effect on oil content. The direct positive effect of oleic acid on oil content was, however, compensated by the negative indirect effects of stearic and vernolic acid resulting in a negative correlation (r = –0.60) between oleic acid and oil content. These observations will support the selection of accessions with high seed and oil yield, high meal protein contents, and high vernolic acid content.     

Genetic potential and stability of carotene content in cassava roots

People in vast areas of the tropics suffer from vitamin A deficiency, resulting in progressive eye damage and eventually leading to blindness. Improving the content of vitamin A precursors in staple crops could alleviate or solve such a problem. The objective of this work was to study the range of variability for carotene content in a sub-set of the global cassava germplasm collection, and to determine the inheritance of carotenes, as well as their stability in response to different processing methodologies. Genotypes with more than 2 mg carotenes/100 g of fresh roots have been selected as parental material for population development. Although root colour is highly correlated with carotene content, a quantitative evaluation of genotypes selected by colour is required in order to increase the efficiency of selection. Relatively few major genes are involved in the determination of carotene accumulation in cassava roots. Stability of carotenes in response to different processing methods is genotypically dependant, representing a trait to be evaluated after selecting for high carotene concentration in fresh roots. The results from this work have provided the basis for defining future strategies for the improvement of the nutritional quality of cassava. This revised version was published online in July 2006 with corrections to the Cover Date.     

观赏向日葵鲜切花栽培与采后保鲜

观赏向日葵系菊科向日葵属一年生草本植物,一般作为油料作物栽培。由于其抗逆性强,世界各地均有广泛栽培。随着矮生中小型向日葵的选育栽培,以及切花、园林绿化品种的更新,观赏向日葵及其切花的市场认同范围与需求量在不断扩大。在西方国家,向日葵切花近10年的市场容量在以25％的速度增长。     

Genetic variability in antibiotic resistance to the greenbug Schizaphis graminum in Hordeum chilense

Hordeum chilense (Roem. et Schult), a native grass of South America, is a source of antixenotic and antibiotic resistance to the greenbug Schizaphis graminum Rondani. The genetic and environmental components of the variability in antibiotic resistance shown by H. chilense were determined by measuring the developmental time, the length of adult life, fecundity and intrinsic rate of population increase of green-bugs reared on this host. The aphids belonged to a clone of biotype C. Plants were cloned to reduce the incidence of environmental variability. Different plant characters appeared to prolong aphid developmental time and reduce the length of adult life and total fecundity. The broad sense heritability and the genetic variability of these plant characters were different. The plant character that affected aphid development appears to differ from that affecting fecundity.     

A trait-based characterization of cover plants to assess their potential to provide a set of ecological services in banana cropping systems

Cover plants are one of the means to increase the functional biodiversity of fields and to enhance the ecological functions of the communities. However, the design of cropping systems including cover plants relies largely on expert knowledge. There is a lack of methods to select the best suited cover plants according to their role in the agrosystem. We propose to use functional traits to select cover plants suited to sustain ecological services in the banana agrosystems of the French West Indies. Our objectives were (i) to characterize a collection of cover plants on a trait basis, according to their potential to provide the services expected in a banana agrosystem and (ii) to discuss the potential use of this characterization for the design of innovative multi-species banana cropping systems. In these systems, four main services are targeted, i.e. controlling weeds, controlling plant-parasitic nematodes, improving soil fertility and particularly N availability, and avoiding competition with banana for resource acquisition. Three experiments were conducted, under field and controlled conditions, to evaluate the potential of a collection of 28 tropical cover plants to achieve the functions related to these services. For each cover plant, a functional profile was constructed from a combination of plant traits that are easy to assess experimentally. It described plants’ potential to achieve the functions expected in a banana agrosystem. Functional profiles required for cover plant usages were also identified. The comparison of the plant functional profiles and the functional profiles required for their usages enabled us to select the best suited plants for each usage. However, these functional profiles rarely corresponded, meaning that a cover plant is rarely sufficient to achieve all the functions required for a usage. Functional complementarities obtained by the mixture of different species of cover plants are thus often required. Compared to classical approaches of innovative cropping system design based on the experimental testing of spatial and temporal plant combinations, such a trait-based approach saves time by focusing on a shortlist of cover plants best suited according to their functions in the agrosystem.     

Genetic variability in flooding tolerance of mungbean (Vigna radiata L. Wilczek) genotypes

The study was an exploratory in nature conducted using a large number of mungbean (Vigna radiata L. Wilczek) genotypes of diverse growth habit and adaptive characters. Soil flooding induced changes in eleven morpho-physiological characters of one-week old seedlings of 530 mungbean genotypes was compared in the study. The first and second principal components (PC) of principal component analysis (PCA) results accounted for 58 and 14%, respectively of the total variations of mungbean genotypes. The variation for first PC was composed mainly of relative dry weight (DW) of shoot and leaf as well as total DW. The second PC distinguished the genotypes that produced larger root system. There were seven clusters distinguished in the cluster analysis. The genotypes in cluster 4 and 6 performed better in respect of relative total DW and relative root DW, respectively and hence having flooding tolerance. The genotypes in clusters 7 and 1 performed very poorly and those of under clusters 3, 2 and 5 were moderate to poor. D² analysis indicated that the clusters differed significantly from each other. Discriminant function analysis (DFA) reaffirmed that more than 90% of the genotypes were correctly assigned to clusters. Both PCA and DFA confirmed that the relative total DW followed by shoot and leaf DW as well as leaf area were the major discriminatory variables and the root : shoot ratio and root DW were the secondary important variables to distinguish genotypes into groups. In this study, multivariate analyses were used in identifying the mungbean genotypes of desirable traits for flooding tolerance.     

Genetic variability of cassava progenies developed through introgression of cassava mosaic disease resistance into Ghanaian landraces

Availability of genetic diversity is important in selecting suitable cultivars for crop improvement. Progenies of crosses between 19 farmer-preferred cassava landraces and Cassava Mosaic Disease (CMD)-resistant cultivar TME 11 were evaluated and compared with their maternal parents to assess their genetic variability and genetic gains based on CMD tolerance, some growth variables and root yield. The combined analysis of variance for the traits showed significant genotypic differences amongst the progenies and the parents. Apart from a few instances, the differences in replications and years were also significant. Genetic variability components showed high heritability ranging from 92.3 to 99.6% and moderately high genetic gains of 54.1 to 99.6% for the parental cultivars. Apart from canopy spread and plant height, heritability and genetic gains of the progenies were slightly lower than the parents indicating high variability within families of the progenies. The phenotypic coefficient of variation was slightly greater than genotypic coefficient of variation indicating minimal influence of environment on the genotypes. For most of the characters evaluated, the mean performance of the progenies was higher than their corresponding parental lines. Although the genotypes differed significantly (P < 0.001) for all traits evaluated, cultivars such as Afebankye, Bosome nsia, Cedi bankye, 262 Debor, Kwadaso 25, Nkaakom 57 and Sisipe were found to constitute a pool of germplasm with adequate variability. The negative correlation between CMD incidence and other traits evaluated showed significant progress made in the breeding program.     

Genetic variability of Striga asiatica (L.) Kuntz based on AFLP analysis and host-parasite interaction

AFLP analysis was used to estimate genetic variability within and among 14 populations of Striga asiaticaL. Kuntze collected from different locations within the Republic of Benin. The mean within-population genetic distances ranged from 0.028 to 0.038, while the mean among-population genetic distances ranged from 0.019to 0.088, with an assumed minimum genetic distance of0.01 in each case. Intra- and inter-population variation was reflected by a highly significant R² of 0.61for the regression of geographic distance versus genetic distance. Interactions of the different Strigapopulations with susceptible host genotypes, 8338-1 (Zea mays) and CK60B (Sorghum bicolor),indicated a high degree of host-specialization, with CK60B failing to support growth of the parasite from any of the populations. The various Striga populations also exhibited different degrees of virulence on susceptible host plants. Our results support the hypothesis that different populations of this parasite may well be considered and treated as ecotypes in plant breeding programs developing resistance to S. asiatica. This revised version was published online in August 2006 with corrections to the Cover Date.     

观赏植物种子的休眠因素和破眠措施

多种观赏植物的种子都具有休眠特性,表现为新收获的种子在适宜的外界条件下发芽速度慢,发芽不整齐,发芽率低,甚至不能发芽。这种特性是观赏植物在长期的系统发育过程中,自然选择的结果,有利于其个体的生存和种族的延续。但在应用时,却给种子发芽试验和播种育苗带来很大的困难,有时会造成种子的大量浪费。分析观赏植物种子的休眠因素,采取相应措施打破休眠,具有重要的实践意义。1观赏植物种子的休眠因素1.1胚休眠主要是胚发育不完全或生理休眠造成的。胚发育不完全有些观赏植物种子虽外观形态已成熟,但种胚并未发育完全,不具备发芽能力。如兰…