Using fractal analysis to assess how species perceive landscape structure

To develop a species-centered definition of landscapes, I suggest using a fractal analysis of movement patterns to identify the scales at which organisms are interacting with the patch structure of the landscape. Significant differences in the fractal dimensions of movement patterns of two species indicate that the species may be interacting with the patch structure at different scales. Fractal analysis therefore permits comparisons of landscape perceptions of different species within the same environment.I tested the utility of this fractal application by analyzing the movement patterns of three species of acridid grasshoppers (Orthoptera) in a grassland mosaic. The largest species moved up to 6 times faster than the two smaller species, and species exhibited different responses to microlandscape structure within 25-m² plots. Further, the largest species exhibited different responses to microlandscape structure in two pastures subjected to different intensities of cattle grazing. This species thus is able to integrate information on landscape structure at broad spatial scales. Fractal analysis of movement patterns revealed that the two small species had significantly more tortuous patterns than the larger species, which suggests that these species are interacting with patch structure at a finer scale of resolution than the large species. Fractal analysis can be used to identify the perceptive resolution of a species; that is, the spatial grain and extent at which they are able to perceive and respond to heterogeneity. Analysis of movement patterns across a range of spatial scale may reveal shifts in fractal dimension that reflect transitions in how species respond to the patch structure of the landscape at different scales.     

Using remote-sensing data to assess habitat selection of a declining passerine at two spatial scales

Context

Detailed information on habitat needs is integral to identify conservation measures for declining species. However, field data on habitat structure is typically limited in extent. Remote sensing has the potential to overcome these limitations of field-based studies.

Objective

We aimed to assess abiotic and biotic characteristics of territories used by the declining wood warbler (Phylloscopus sibilatrix), a forest-interior migratory passerine, at two spatial scales by evaluating a priori expectations of habitat selection patterns.

Methods

First, territories established by males before pairing, referred to as pre-breeding territories, were compared to pseudo-absence control areas located in the wider forested landscape (first spatial scale, N_territories = 66, N_controls = 66). Second, breeding territories of paired wood warblers were compared to true-absence control areas located immediately close-by in the forest (second spatial scale, N_territories = 78, N_controls = 78). Habitat variables predominantly described forest structure and were mainly based on first and last pulse lidar (light detection and ranging) data.

Results

Occurrence of pre-breeding territories was related to vegetation height, vertical diversity and stratification, canopy cover, inclination and solar radiation. Occurrence of breeding territories was associated to vegetation height, vertical diversity and inclination.

Conclusions

Territory selection at the two spatial scales addressed was governed by similar factors. With respect to conservation, habitat suitability for wood warblers could be retained by maintaining a shifting mosaic of stand ages and structures at large spatial scales. Moreover, leaf-off lidar variables have the potential to contribute to understanding the ecological niche of species in predominantly deciduous forests.

     

Effects of spatial habitat heterogeneity on habitat selection and annual fecundity for a migratory forest songbird

Understanding how spatial habitat patterns influence abundance and dynamics of animal populations is a primary goal in landscape ecology. We used an information-theoretic approach to investigate the association between habitat patterns at multiple spatial scales and demographic patterns for black-throated blue warblers (Dendroica caerulescens) at 20 study sites in west-central Vermont, USA from 2002 to 2005. Sites were characterized by: (1) territory-scale shrub density, (2) patch-scale shrub density occurring within 25 ha of territories, and (3) landscape-scale habitat patterns occurring within 5 km radius extents of territories. We considered multiple population parameters including abundance, age ratios, and annual fecundity. Territory-scale shrub density was most important for determining abundance and age ratios, but landscape-scale habitat structure strongly influenced reproductive output. Sites with higher territory-scale shrub density had higher abundance, and were more likely to be occupied by older, more experienced individuals compared to sites with lower shrub density. However, annual fecundity was higher on sites located in contiguously forested landscapes where shrub density was lower than the fragmented sites. Further, effects of habitat pattern at one spatial scale depended on habitat conditions at different scales. For example, abundance increased with increasing territory-scale shrub density, but this effect was much stronger in fragmented landscapes than in contiguously forested landscapes. These results suggest that habitat pattern at different spatial scales affect demographic parameters in different ways, and that effects of habitat patterns at one spatial scale depends on habitat conditions at other scales.     

Consequences of spatial heterogeneity for ecosystem services in changing forest landscapes: priorities for future research

Changes in key drivers (e.g., climate, disturbance regimes and land use) may affect the sustainability of forest landscapes and set the stage for increased tension among competing ecosystem services. We addressed two questions about a suite of supporting, regulating and provisioning ecosystem services in each of two well-studied forest landscapes in the western US: (1) How might the provision of ecosystem services change in the future given anticipated trajectories of climate, disturbance regimes, and land use? (2) What is the role of spatial heterogeneity in sustaining future ecosystem services? We determined that future changes in each region are likely to be distinct, but spatial heterogeneity (e.g., the amount and arrangement of surviving forest patches or legacy trees after disturbance) will be important in both landscapes for sustaining forest regeneration, primary production, carbon storage, natural hazard regulation, insect and pathogen regulation, timber production and wildlife habitat. The paper closes by highlighting five general priorities for future research. The science of landscape ecology has much to contribute toward understanding ecosystem services and how land management can enhance—or threaten—the sustainability of ecosystem services in changing landscapes.     

Fine-scale characterization of bird habitat using airborne LiDAR in an urban park in Japan

Birds are ecosystem service providers and excellent urban ecosystem indicators because they are sensitive to habitat structure. Light detection and ranging (LiDAR) technology is a promising tool in bird habitat characterization because it can directly acquire fine-scale 3-D information over large areas; however, most of past avian ecological studies using LiDAR were conducted in North America and Europe, and there have been no studies in Asia. The robustness of LiDAR data across different habitat types remain problematic. In this study, we set 13 plots having different canopy area percentages in a large-scale urban park in Japan, and examined the usefulness of airborne LiDAR data in modeling richness and diversity of forest bird species and the abundance of Paridae species that play an important role in the urban food web. Bird surveys were conducted eight times at each plot during the birds’ breeding season, and the results were estimated using generalized linear models. In consequence, all of the response variables were explained by one or a few LiDAR variables, and the 1 × 1 × 1-m voxel-based variables were especially robust estimators. When targeting only densely-forested plots having more than 60% canopy area, the LiDAR data efficiency declined in estimation of the richness and diversity of whole forest bird species, whereas a laser penetration rate was efficient for estimating the Paridae species abundance. These results implied that the LiDAR data are useful in habitat characterization of forest birds, and even when targeting only dense forests, some LiDAR variables are effective for habitat estimation of birds preferring specific forest structures. In the future, application of LiDAR across a variety of ecosystems will greatly serve to develop adaptive conservation and management planning for urban forests.     

Isolating spatial effects on beta diversity to inform forest landscape planning

Understanding the effects of landscapes on pest and non-pest species is necessary if regional landscape planning is to both control pests and conserve biodiversity. A first step is understanding of how both pests and non-pest species interact with the landscape configuration to determine the density of the two groups. While it is impossible to examine the occurrence and dispersal behavior of all species, different turnover rates in different species assemblages may offer general insights into responses of species assemblages. In this study I examine the distance decay of similarity of longhorned beetle assemblages in a large forest area in Indiana, USA, with minimal differences in habitat and few barriers to dispersal. Differences in beta diversity between groups are therefore likely due to dispersal distances. I found differences in turnover rates between species that decompose dead wood and those that attack living trees, and between species with different adult feeding habits. This suggests that management for simultaneous conservation and pest control is possible.     

塞罕坝机械林场生态景观林空间结构对夏季景观质量的影响

林内景观质量评价对林场的经营和管理有重要意义,而林分空间结构的研究对生态景观林景观质量有重要影响。以塞罕坝机械林场落叶松纯林与落叶松-白桦混交林为研究对象,选取了16张最具代表性的照片,采用美景度评价（SBE）法以美景度作为景观质量指标,通过探究林分空间结构对林分夏季近景的景观质量影响,进而为塞罕坝生态景观林夏季景观经营技术提供依据。结果表明：（1）林内垂直结构越完整,林下整齐度越高,人们的喜好频数越高,美景度越高。（2）林内透视距离与美景度值存在明显的二项式关系;林内透视距离高于1倍树高时,美景度值随透视距离增加而增加。（3）林分枝下高与株高比值和美景度值存在二项式关系,林分枝下高与株高比值在0.5～0.6之时,美景度值存在1个峰值,此时人们接受程度最高。人们对林内垂直结构、透视距离、林下整齐度、树干形态与枝下高等指标偏好程度为打造更美好的生态景观林提供科学指导,对林场的转型和森林景观旅游事业有促进作用。     

Mapping the urban forest in detail: From LiDAR point clouds to 3D tree models

Trees are an integral component of the urban environment and important for human well-being, adaption measures to climate change and sustainable urban transformation. Understanding the small-scale impacts of urban trees and strategically managing the ecosystem services they provide requires high-resolution information on urban forest structure, which is still scarce. In contrast, there is an abundance of data portraying urban areas and an associated trend towards smart cities and digital twins as analysis platforms. A GIS workflow is presented in this paper that may close this data gap by classifying the urban forest from LiDAR point clouds, detecting and reconstructing individual crowns, and enabling a tree representation within semantic 3D city models. The workflow is designed to provide robust results for point clouds with a density of at least 4 pts/m² that are widely available. Evaluation was conducted by mapping the urban forest of Dresden (Germany) using a point cloud with 4 pts/m². An object-based data fusion approach is implemented for the classification of the urban forest. A classification accuracy of 95 % for different urban settings is achieved by combining LiDAR with multispectral imagery and a 3D building model. Individual trees are detected by local maxima filtering and crowns are segmented using marker-controlled watershed segmentation. Evaluation highlights the influences of both urban and forest structure on individual tree detection. Substantial differences in detection accuracies are evident between trees along streets (72 %) and structurally more complex tree stands in green areas (31 %), as well as dependencies on tree height and crown diameter. Furthermore, an approach for parameterized reconstruction of tree crowns is presented, which enables efficient and realistic city-wide modeling. The suitability of LiDAR to measure individual tree metrics is illustrated as well as a framework for modeling individual tree crowns via geometric primitives.     

Predictors of bark beetle activity and scale-dependent spatial heterogeneity change during the course of an outbreak in a subalpine forest

Climate conditions and forest structure interact to determine the extent and severity of bark beetle outbreaks, yet the relative importance of each may vary though the course of an outbreak. In 2008, we conducted field surveys and reconstructed forest conditions at multiple stages within a recent mountain pine beetle (MPB) outbreak in Rocky Mountain National Park, Colorado. At each stage in the outbreak, we examined changes in (1) lodgepole pine mortality and surviving stand structure, (2) the influence of topographic versus stand structure variables on mortality rates, and (3) stand complexity and landscape heterogeneity. Lodgepole pine mortality reduced basal area by 71 %, but only 47 % of stems were killed. Relative to pre-outbreak stands, surviving stands had lower mean dbh (11.0 vs. 17.4 cm), lower basal area (8.5 vs. 29.3 m² ha^?1), lower density (915 vs. 1,393 stems ha^?1), and higher proportions of non-host species (23.1 vs. 10.6 % m² ha^?1). Factors predicting mortality rates changed through the course of the outbreak. Tree mortality during the early stage of the outbreak was associated with warm, dry sites and abundant large trees. During the middle and late stages, mortality was associated with stand structure alone. Stand complexity increased, as defined by stand-scale variability in density, basal area, and the proportion of susceptible trees. Landscape heterogeneity decreased according to semi-variograms of tree diameter and basal area. Increased stand complexity may inhibit future MPB population development, but decreased landscape heterogeneity may facilitate outbreak spread across the landscape if a future outbreak were to irrupt.     

Estimation of broad-leaved canopy growth in the urban forested area using multi-temporal airborne LiDAR datasets

Inter-annual canopy growth is one of the key indicators for assessing forest conditions, but the measurements require laborious field surveys. Up-to-date LiDAR remote sensing provides sufficient three-dimensional morphological information of the ground to monitor canopy heights on a broad scale. Thus, we attempted to use multi-temporal airborne LiDAR datasets in the estimation of vertical canopy growth, across various types of broad-leaved trees in a large urban park.The growth of broad-leaved canopies in the EXPO '70 urban forest in Osaka, Japan was assessed with 19 plots at the stand level and 39 selected trees at the individual-tree level. Airborne LiDAR campaigns repeatedly observed the park in the summers of 2004, 2008, and 2010. We acquired canopy height models (CHMs) for each year from the height values of the uppermost laser returns at every 0.5 m grid. The annual canopy growth was calculated by the differences in CHMs and validated with the annual changes in field-measured basal areas and tree heights.LiDAR estimations revealed that the average annual canopy growth from 2004 to 2010 was 0.26 ± 0.11 m m⁻² yr⁻¹ at the plot level and 0.26 ± 0.10 m m⁻² yr⁻¹ at the individual-tree level. This result showed that growing trends were consistent at different scales through 2004 to 2010 despite uncertainty in estimating short-term growth for small crown areas at the individual-tree level. This LiDAR-estimated canopy growth shows a moderate relation to field-measured increase of basal areas and average heights. The estimation uncertainties seem to result from the complex canopy structure and irregular crown shape of broad-leaved trees. Challenges still remain on how to incorporate the growth of understory trees, growth in the lateral direction, and gap dynamics inside the canopy, particularly in applying multi-temporal LiDAR datasets to the large-scale growth assessment.     

Correction to: Using soundscapes to assess biodiversity in Neotropical oil palm landscapes

Landscape Ecology - In the original publication of the article the below given funding information was missed and now it is included in this correction     

Modeling the effects of forest harvesting on landscape structure and the spatial distribution of cowbird brood parasitism

Timber harvesting affects both composition and structure of the landscape and has important consequences for organisms using forest habitats. A timber harvest allocation model was constructed that allows the input of specific rules to allocate forest stands for clearcutting to generate landscape patterns reflecting the look and feel of managed landscapes. Various harvest strategies were simulated on four 237 km² study areas in Indiana, USA. For each study area, the model was applied to simulate 80 years of management activity. The resulting landscape spatial patterns were quantified using a suite of landscape pattern metrics and plotted as a function of mean harvest size and total area of forest harvested per decade to produce response surfaces. When the mean clearcut size was 1 ha, the area of forest interior remaining on the landscape was dramatically reduced and the amount of forest edge on the landscape increased dramatically. The potential consequences of the patterns produced by the model were assessed for a generalized neotropical migrant forest bird using a GIS model that generates maps showing the spatial distribution of the relative vulnerability of forest birds to brood parasitism by brown-headed cowbirds. The model incorporates the location and relative quality of cowbird feeding sites, and the relation between parasitism rates and distance of forest from edge. The response surface relating mean harvest size and total area harvested to the mean value of vulnerability to cowbird brood parasitism had a shape similar to the response surfaces showing forest edge. The results of our study suggest that it is more difficult to maintain large contiguous blocks of undisturbed forest interior when harvests are small and dispersed, especially when producing high timber volumes is a management goal. The application of the cowbird model to landscapes managed under different strategies could help managers in deciding where harvest activity will produce the least negative impact on breeding forest birds.     

Using graph theory to analyse and assess changes in Mediterranean woodland connectivity

Landscape Ecology - The Portuguese montado is an agro-silvopastoral system, similar to the Spanish dehesa, known for its cultural, economic and ecological value. Despite its importance, contrasting...     

Impact of scale on morphological spatial pattern of forest

Assessing and monitoring landscape pattern structure from multi-scale land-cover maps can utilize morphological spatial pattern analysis (MSPA), only if various influences of scale are known and taken into account. This paper lays part of the foundation for applying MSPA analysis in landscape monitoring by quantifying scale effects on six classes of spatial patterns called: core, edge, perforation, branch, connector and islet. Four forest maps were selected with different forest composition and configuration. The sensitivity of MSPA to scale was studied by comparing frequencies of pattern classes in total forest area for various combinations of pixel size (P) and size parameter (S). It was found that the quantification of forest pattern with MSPA is sensitive to scale. Differences in initial composition and configuration influence the amount but not the general tendencies of the variations of morphological spatial pattern (MSP) class proportions with scale. Increase of P led to data generalization resulting in either a removal of the small size features or their potential transformation into other non-core MSP classes, while an increase of S decreases the MSP core area and this process may transform small core areas into the MSP class islet. We established that the behavior of the MSPA classes with changing scale can be categorized as consistent and robust scaling relations in the forms of linear, power, or logarithmic functions over a range of scales.     

Best practices to use the iPad Pro LiDAR for some procedures of data acquisition in the urban forest

The search for means to improve urban forest inventories is challenging for small communities and cities with a limited budget. Mobile applications on iPad or iPhone seem promising equipment to make some inventory practices cheaper and faster, although procedures of use are still limited. So, we tested the LiDAR scanner application on an iPad Pro 2020 for trunk perimeter measures and the position for 10 different groups of species in the Polish Airmen Park, Kraków (Poland). For each group, in 10 trees, we measured the perimeter at breast height (PBH) and relative tree trunk position. The first procedure tested the estimation of PBH according to the distance of an iPad Pro from the trunk, the time of 3D data acquisition and the number of turns around trees. The second procedure tested PBH estimations according to the number of trees scanned in just one try (3, 6 and 10 trees). The third procedure tested the estimation of the relative position of tree trunks from other trees. In each procedure, we compared 3D point clouds generated by an App running on iPad Pro with data from a measuring tape and FARO FOCUS 3D (TLS) point clouds. The results showed that the shorter the distance from the iPad Pro to the trunk surface, the more precise the PBH estimation, not significantly different (p > 0,01) from TLS values. Distances between 1.0 and 2.0 m would be most suitable for the iPad Pro application but performing two turns around the tree trunk would improve results for PBH measurements. Trees scanned as 3-tree groups with the iPad Pro presented the smallest PBH differences compared to TLS point clouds. No significant differences (p > 0,01) were found between the methods for estimating the distance among trees, which shows that the iPad Pro can deliver a precise relative position of tree trunks.     

Using bulked AFLP analysis to assess genetic diversity in Echinacea species

Echinacea is an allogamous genus, thus its cultivars or populations are genetically heterogeneous. Using amplified fragment length polymorphism (AFLP) to estimate the genetic diversity of Echinacea is generally limited by the large number of individual plants and the higher cost that need to be processed. In the present study, effectiveness of several sizes of DNA bulking (10, 15, 20, 25 and 30 individuals) with 20, 36 and 55 primer pairs was compared using AFLP in determining the genetic diversity of Echinacea species. The results indicated that the use of bulked DNA-based AFLP analysis by using the selected eight primer pairs was capable of detecting genetic diversity between the tested Echinacea species, provided that the potential presence of low frequency variants was ignored and a possible bias in the estimates of genetic similarity was accepted. The assessments showed that a bulk of 15 individuals could detect sufficient AFLP variations at most genomic sites. Additionally, 20 primer pairs could generate sufficient polymorphic fragments to achieve high resolving power of AFLP for the tested Echinacea species.     

The protean relationship between boreal forest landscape structure and red squirrel distribution at multiple spatial scales

This paper investigates two fundamental questions in landscape ecology: what influence does landscape context, or the composition of the matrix, have on an animals’ response to landscape structure, and how does this relationship extrapolate between landscapes? We investigate how the distribution of North American red squirrels (Tamiasciurus hudsonicus) in the boreal mixedwood forest is influenced by anthropogenically (forest harvest) and naturally (forest fire) derived landscape structure. We studied the presence and absence of red squirrels over two years in three landscape types: one managed for timber harvest, one recently burned by wildfire, and a third unburned unmanaged landscape. Landscape composition and configuration, measured at several spatial scales, predicted red squirrel’s distribution in all three landscapes, but the significant landscape variables changed across spatial scales, across time, and across landscapes. These findings emphasize the variability in landscape structure/animal distribution relationships, and enforce the need to link pattern-finding studies, such as this one, with searches for the mechanisms behind the observed pattern.     

Underestimating the effects of spatial heterogeneity due to individual movement and spatial scale: infectious disease as an example

Many ecological and epidemiological studies occur in systems with mobile individuals and heterogeneous landscapes. Using a simulation model, we show that the accuracy of inferring an underlying biological process from observational data depends on movement and spatial scale of the analysis. As an example, we focused on estimating the relationship between host density and pathogen transmission. Observational data can result in highly biased inference about the underlying process when individuals move among sampling areas. Even without sampling error, the effect of host density on disease transmission is underestimated by approximately 50 % when one in ten hosts move among sampling areas per lifetime. Aggregating data across larger regions causes minimal bias when host movement is low, and results in less biased inference when movement rates are high. However, increasing data aggregation reduces the observed spatial variation, which would lead to the misperception that a spatially targeted control effort may not be very effective. In addition, averaging over the local heterogeneity will result in underestimating the importance of spatial covariates. Minimizing the bias due to movement is not just about choosing the best spatial scale for analysis, but also about reducing the error associated with using the sampling location as a proxy for an individual’s spatial history. This error associated with the exposure covariate can be reduced by choosing sampling regions with less movement, including longitudinal information of individuals’ movements, or reducing the window of exposure by using repeated sampling or younger individuals.

     

Integrating airborne lidar and satellite imagery to model habitat connectivity dynamics for spatial conservation prioritization

Context

The application of regional-level airborne lidar (light detection and ranging) data to characterize habitat patches and model habitat connectivity over large landscapes has not been well explored. Maintaining a connected network of habitat in the presence of anthropogenic disturbances is essential for regional-level conservation planning and the maintenance of biodiversity values.

Objectives

We quantified variation in connectivity following simulated changes in land cover and contrasted outcomes when different conservation priorities were emphasized.

Methods

First, we defined habitat patches using vegetation structural attributes identified via lidar. Second, habitat networks were constructed for different forest types and assessed using network connectivity metrics. And finally, land cover change scenarios were simulated using a series of habitat patch removals, representing the impact of implementing different spatial prioritization schemes.

Results

Networks for different forest structure types produced very different patch distributions. Conservation scenarios based on different schemes led to contrasting changes during land cover change simulations: the scheme prioritizing only habitat area resulted in immediate near-term losses in connectivity, whereas the scheme considering both habitat area and their spatial configurations maintained the overall connectivity most effectively. Adding climate constraints did not diminish or improve overall connectivity.

Conclusions

Both habitat area and habitat configuration should be considered in dynamic modeling of habitat connectivity under changing landscapes. This research provides a framework for integrating forest structure and cover attributes obtained from remote sensing data into network connectivity modeling, and may serve as a prototype for multi-criteria forest management and conservation planning.