Antioxidant Compounds,Nutritional Quality and Colour of Two Strawberry Genotypes from <Emphasis Type="Italic">Fragaria</Emphasis> × <Emphasis Type="Italic">Ananassa</Emphasis>

In this study, average weight, colour, soluble solids content and titratable acidity were determined as quality parameters of strawberry fruits while ascorbic acid, total anthocyanins, total phenolics, total flavonoids, minerals and trace elements content as nutritional parameters. All these attributes along with the DPPH radical scavenging activity were screened in two strawberry genotypes grown on the same site at the ripe stage. Also, the phenolic profiles of the strawberry fruits were obtained by HPLC. Except colour, results showed no significant differences between cultivars in quality parameters. Ascorbic acid found for ‘Premial’ cv. (81.62?mg/100?g) was twice the amount found in ‘Magic’ cv. (42.15?mg/100?g), total phenolics varied from 207.95 (cv. ‘Premial’) to 249.98 (cv. ‘Magic’) mg GAE/100?g while total flavonoid content in fruits of ‘Magic’ cultivar (79.56?mg/100?g) was 2?fold higher than the one of the ‘Premial’ cv. The quercetin content ranged from 2.72 to 4.66?mg/100?g, whereas free ellagic acid ranged from 6.79 to 9.03?mg/100?g. The pale shiny fruits of ‘Premial’ cv. (higher L*, h^o and chroma index) had a lower total anthocyanin content (19.07?mg CG/100?g) than the bluish fruits of the ‘Magic’ cv. (23.96?mg CG/100?g). An inverse relationship between the levels of ascorbic acid and anthocyanin contents was also noticed in strawberry samples. Significant differences were found also in minerals and trace elements content of the two strawberry cultivars. The results revealed the importance of genetic background for the content of antioxidant compounds in strawberry fruits.     

Fruit Cracking in Mango (<Emphasis Type="Italic">Mangifera indica</Emphasis> L.) cv. ‘Dashehari’

The mango (Mangifera indica L.) is native to South and Southeast Asia, from where it has been distributed worldwide to become one of the most cultivated fruits in the tropics. It is the national fruit of India. In India, harvest and sale of mangoes take place during March-May and the fruits have high economic value in India. Studies were first time conducted on mango fruits to observe the severity of fruit cracking incidence. The stone was exposed in case of longitudinal type cracking and never exposed in star type cracking. The longitudinal cracking was 3.8, 3.4 and 1.7 % and star type cracking was 0.3, 1.8 and 0.02 % during 2009, 2010 and 2011, respectively. The lesser pulp thickness and higher stone weight in fruit cracked samples may have responsible for fruit cracking. There was a close relationship between fruit cracking and 3 months average weather conditions. The maximum temperature had positive relation with total fruit cracking.     

Using multiple metrics to estimate seasonal landscape connectivity for Blanding’s turtles (<Emphasis Type="Italic">Emydoidea blandingii</Emphasis>) in a fragmented landscape

Context

Landscapes and animal behavior can exhibit temporal variability and connectivity estimates should consider this phenomenon. In many species, timing of activities such as nesting, mate searching, and hibernation occurs during distinct periods in which movement events may differ, along with physical characteristics of the surrounding landscape.

Objectives

We estimate movement, landscape conductance, and patch importance for a turtle species across two seasonal activity periods (spring, late summer) in a fragmented agricultural region. Three connectivity approaches are compared to identify their advantages and disadvantages.

Methods

A least-cost distance model, circuit-based approach, and patch-based index were used to collectively describe the potential functional connectivity of Blanding’s turtle (Emydoidea blandingii) across a multi-temporal scale in an agricultural region of south western Ontario.

Results

Connectivity decreased further into the active season exhibited through lower conductance of the landscape and fewer pathways, while the importance of habitat nodes shifted due to temporal variability in the number and distribution of nodes. Models provided different yet complimentary information, with least-cost models overestimating discrete pathways yet providing a secondary measure of landscape barriers. The circuit-based model estimated corridors of least resistance providing an overall characterization of the landscape, while patch-based indices provided key information on the importance of individual habitat patches.

Conclusion

Findings highlight the importance of including a temporal aspect in connectivity modelling as results demonstrate a change in functional connectivity over time. We also recommend employing multiple connectivity metrics to capture variation in movement behavior.

     

Determining the Energy Usage Efficiency of Walnut (<Emphasis Type="Italic">Juglans Regia</Emphasis> L.) Cultivation in Turkey

The aim of this study is to reveal the energy balance of walnut in Central Anatolian Region in Turkey. This study has been conducted at the walnut cultivating facilities during the 2014–2015 production season in K?r?ehir, Konya, Nev?ehir and Ni?de provinces of Central Anatolian Region in Turkey, where walnut cultivation is intense. In the study, a total of 28 walnut cultivation facilities, yielding walnut, have been selected through Neyman method and surveys and observations have been performed in these facilities. The agricultural input energies and output energies used in walnut cultivation have been calculated to define the energy use efficiency. According to the study findings, the energy inputs in walnut cultivation are calculated respectively 17,851.33?MJ ha^?1 (74.40%) chemical fertilizer energy, 2229.87?MJ ha^?1 (9.29%) fuel energy, 1640.64?MJ ha^?1 (6.83%) irrigation water energy, 1539?MJ ha^?1 (6.41%) machine energy, 508.02?MJ ha^?1 (%2.11) chemical energy, 180.35?MJ ha^?1 (0.75%) human labour energy and 43.33?MJ ha^?1 (0.18%) farm manure energy. Production outputs have been calculated as 14,679.52?MJ ha^?1. Following the energy calculations, the output/input ratio, specific energy, energy efficiency and net energy calculations have been calculated respectively as 0.61, 30.20?MJ kg^?1, 0.03?kg MJ^?1 and ?9313.02?MJ ha^?1. Benefit-cost ratio was calculated as 1.88, by dividing the gross value of production by the total cost of production per hectare in walnut production.     

Influence of BAP Concentrations and Nutrient Medium Composition on <Emphasis Type="Italic">In Vitro</Emphasis> Regeneration of ‘Öküzgözü’ and ‘Boğazkere’ (<Emphasis Type="Italic">Vitis vinifera</Emphasis> L.) Cultivars

This study has been conducted with the aim to determine the type of nutrient medium that can be used in micropropagation studies for ‘Öküzgözü’ and ‘Bo?azkere’ and to specify BAP concentrations. In the study where ejectors with a length of 0.7–0.8?cm that are obtained with single-node culture are used, it was focused on four different nutrient media such as MS, DKW, QL and WPM and on six different concentrations such as 0.2–0.4–0.6–0.8–1.0–1.5 mg l^?1 BAP. Single-node suspension explants which will be used in initiating the culture, are taken into culture in MS nutrient medium and the nutrient medium is supported with 30?g l^?1 sucrose, 6?g l^?1 agar and 1?mg l^?1 BAP. In the trial environment, parameters such as number of shoots, shoot length (cm), number of nodes and callus ratio have been investigated. For both grape varieties, the best outcome was obtained with MS nutrient medium with respect to number of shoots, shoot length, and number of nodes. These values were found as 4.66, 1.24 and 6.39 for ‘Öküzgözü’ variety respectively, whereas they are determined as 6.28, 1.15 and 6.81 for ‘Bo?azkere’ variety respectively. In both grape varieties in DKW nutrient medium, starting from the 2nd week of culture, obscuration began to appear on the shoots and after this stage no other development has taken place.     

Chemical and Non-Chemical Thinning Treatments Influence Berry Growth and Composition of <Emphasis Type="Italic">Cv.</Emphasis> Shiraz Wine Grape (<Emphasis Type="Italic">V. vinifera</Emphasis> L.)

Yield management is important subject in modern grape growing and winter pruning and cluster thinning treatments were used for yield control. Standard cluster thinning is generally labor intensive and expensive method and grape growers try to new methods, which are alternative to cluster thinning for reducing berry set. The goal of the present research was to investigate the effects of chemical thinning treatments such as ethephon (ETH), gibberellic acid (GA₃), naphthalene acetic acid (NAA) and non-chemical thinning treatments such as early leaf removal (ELR) and standard cluster thinning (SCT) on decreasing grape yield and enhancing berry composition of cv. Shiraz. In this study, percentages of berry set of cv. Shiraz were decreased by both chemical and non-chemical thinning treatments compared to Control. The results from these two different thinning methods shown certainly significant differences in berry composition of cv. Shiraz. Eventually, the best results in improved quality characteristics of cv. Shiraz were obtained from ELR treatment and treatments of ELR, ETH, GA_3, NAA and SCT successively resulted in considerable enhancements in quality attributes of cv. Shiraz.     

<Emphasis Type="Italic">β</Emphasis>-Diversity and vegetation structure as influenced by slope aspect and altitude in a seasonally dry tropical landscape

Topography strongly affects the distribution of insolation in the terrain. Patterns of incoming solar radiation affect energy and water balances within a landscape, resulting in changes in vegetation attributes. Unlike other regions, in seasonally dry tropical forest areas the potential contribution of topography-related environmental heterogeneity to β-diversity is unclear. In Mt. Cerro Verde (Oaxaca), S. Mexico, we: (1) modelled potential energy income for N- and S-facing slopes based on a digital elevation model, (2) examined the response of vegetation structure to slope aspect and altitude and (3) related variations in plant diversity to topography-related heterogeneity. Vegetation survey and modelling of potential energy income (SOLEI-32 model) were based on 30 plots equally distributed among three altitudinal belts defined for each slope of the mountain; combining the three altitudinal belts and the two slopes produced six environmental groups, represented by five vegetation plots each. Potential energy income was about 20% larger on the S than on the N slope (9,735 versus 8,138 MJ/m²), but it did not vary with altitude. In addition, the temporal behaviour of potential energy income throughout the year differed greatly between slopes. Vegetation structure did not show significant changes linked to the environmental gradients analysed, but altitude and aspect did affect β-diversity. We argue that the classic model of slope aspect effect on vegetation needs reconsideration for tropical landscapes. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorised users.     

Determination of Energy Input-Output Analysis in Plum (<Emphasis Type="Italic">Prunus domestica</Emphasis> L.) Production

The aim of this research is to compose the energy input-output analysis of plum in Nevsehir province in Turkey. This research was conducted at the plum cultivating facilities during the 2015–2016 production seasons in Nevsehir province of Central Anatolian Region in Turkey. The agricultural input energies and output energies used in plum cultivation were calculated to determine the energy input-output analysis. According to the research findings, the energy inputs in plum cultivation were calculated respectively 3920?MJ ha^?1 (44.99%) chemical fertilizers energy, 1618.91?MJ ha^?1 (18.58%) diesel fuel energy, 1125.85?MJ ha^?1 (12.92%) chemicals energy, 1069.20?MJ ha^?1 (12.27%) machinery energy, 723.24?MJ ha^?1 (8.30%) human labour energy and 255?MJ ha^?1 (2.93%) irrigation water energy. Production output plum yield were calculated as 12,112.50?MJ ha^?1. The energy output/input ratio, specific energy, energy usage efficiency and net energy calculations were calculated respectively as 1.39, 1.37?MJ kg^?1, 0.73?kg MJ^?1 and 3400.30?MJ ha^?1.     

Electrochemical Properties and Biochemical Composition of <Emphasis Type="Italic">Cv. </Emphasis>Shiraz Wine Grape (<Emphasis Type="Italic">V. vinifera</Emphasis> L.) Depending on Various Dose and Application Time of Foliar Microbial Fertilizer Treatments

Utilization from bio fertilization is well known a considerable tool to improve the yield and fruit quality of various crop fruits through the increasing emphasis on maintain of soil health, minimize environmental pollution and decrease the use of chemical fertilization. In this study, in order to improve wine grape quality features of cv. Shiraz, four different doses of foliar microbial fertilizer, including 0, 1000, 2000 and 3000?ppm were applied at two different terms as Term I (mostly; pre-bloom applications) and Term II (mostly; post-bloom applications). However, there were no influences of application terms of foliar microbial fertilizer treatments; treatment doses had considerable effects on yield and quality parameters. The lowest p-values, meaning the highest berry quality, from doses of foliar microbial fertilizer were obtained from 2000?ppm (105.08?μW), 1000?ppm (110.40?μW), 3000?ppm (112.97?μW) and 0?ppm (119.58?μW). Comparing the applications of foliar microbial fertilizer, it was observed that doses of 2000?ppm (3155.56?mg/kg), 1000?ppm (3000.92?mg/kg) and 3000?ppm (2530.19?mg/kg) exhibited higher total phenolic compounds content when compared with 0?ppm treatment (2206.97?mg/kg). Berries from grapevines applied with the doses of 2000, 1000 and 3000?ppm foliar microbial fertilizer respectively shown higher total anthocyanin content such as 1230.19, 1160.85 and 865.86?mg/kg compared to 0?ppm (637.37?mg/kg). As a result, research the findings indicated that 2000 and 1000?ppm doses of foliar microbial fertilizer were obviously effective on wine grape quality features of cv. Shiraz in terms of electrochemical property, total phenolic compounds content and total anthocyanin content.     

Energy Input-Output Analysis in Organic Mulberry (<Emphasis Type="Italic">Morus spp.</Emphasis>) Production in Turkey: a Case Study Adiyaman-Tut Region

The goal of this study is to do the energy input-output analysis of organic mulberry. This study was conducted at the organic mulberry producing facilities during the 2015–2016 production seasons in Adiyaman-Tut region of Turkey. The agricultural input energies and output energies used in organic mulberry production were computed to determine the energy input-output analysis. According to the research findings, the energy inputs in organic mulberry production were computed respectively as 3948?MJ ha^?1 (59.01%) drip and sprinkler irrigation energy, 1092.42?MJ ha^?1 (16.33%) gravity irrigation energy, 449.33?MJ ha^?1 (6.72%) diesel fuel energy, 416.52?MJ ha^?1 (6.23%) farmyard manure energy, 335.14?MJ ha^?1 (5.01%) human labour energy, 253.52?MJ ha^?1 (3.79%) machinery energy, 93.12?MJ ha^?1 (1.39%) transportation energy, 75.78 MJ ha^?1 (1.13%) animal labour energy and 26.62?MJ ha^?1 (0.40%) organic fertilizer energy. Total input energy was computed as 6690.46?MJ ha^?1. Production output organic mulberry yield were calculated as 37,627.84?MJ ha^?1. The energy output/input ratio, specific energy, energy productivity and net energy computations were computed respectively as 5.62, 1.51?MJ kg^?1, 0.66?kg MJ^?1 and 30,937.37?MJ ha^?1. The consumed total energy input in organic mulberry production could be classified as 88.20% direct, 11.80% indirect, 88.10% renewable and 11.90% non-renewable.     

“Noisy beets”: impact of phenotyping errors on genomic predictions for binary traits in <Emphasis Type="Italic">Beta vulgaris</Emphasis>

Background

Noise (errors) in scientific data is endemic and may have a detrimental effect on statistical analyses and experimental results. The effects of noisy data have been assessed in genome-wide association studies for case-control experiments in human medicine. Little is known, however, on the impact of noisy data on genomic predictions, a widely used statistical application in plant and animal breeding.

Results

In this study, the sensitivity to noise in the data of five classification methods (K-nearest neighbours—KNN, random forest—RF, ridge logistic regression—LR, and support vector machines with linear or radial basis function kernels) was investigated. A sugar beet population of 123 plants phenotyped for a binary trait and genotyped for 192 SNP (single nucleotide polymorphism) markers was used. Labels (0/1 phenotype) were randomly sampled to generate noise. From the base scenario without errors in the labels, increasing proportions of noisy labels—up to 50 %—were generated and introduced in the data.

Conclusions

Local classification methods—KNN and RF—showed higher tolerance to noisy labels compared to methods that leverage global data properties—LR and the two SVM models. In particular, KNN outperformed all other classifiers with AUC (area under the ROC curve) higher than 0.95 up to 20 % noisy labels. The runner-up method, RF, had an AUC of 0.941 with 20 % noise.

     

Assessment of Genetic Variability in Pistachio (<Emphasis Type="Italic">Pistacia vera</Emphasis> L.) with Nuclear SSR Molecular Markers

Pistachio (Pistacia vera L.) is considered to be the most widely cultivated species in the genus Pistacia and regarded as the most probable ancestral species within the genus. As one of the oldest nut crops in human history, pistachio nuts have a high nutritional value and are commercially important. In the present study, the genetic variation of pistachio genotypes was investigated by nuclear SSR markers. The transferability of the SSR markers was high across genotypes, thus, flanking regions of the SSRs are conserved in the studied genotypes. High level of polymorphism was detected among the studied genotypes. The seven SSR primer pairs generated a total of 18 alleles that 13 of them were polymorphic among the genotypes. The range of the polymorphic alleles was 1 (for Ptms9, Ptms40, Ptms41, and Ptms42) to 5 (for Ptms7 locus) with an average of 2.57. The amplified allele sizes ranged from 120 to 250?bp. Pair-wise genetic similarity coefficients varied from 0.20 to 0.75. The UPGMA dendrogram differentiated the genotypes into two major clusters. The present results may be used for the conservation, core collection and future breeding of the pistachio.     

Influence of Bagging on Color,Anthocyanin and Anthocyanin Biosynthetic Genes in Peel of Red Colored Mango <Emphasis Type="Italic">Cv</Emphasis>. ‘Lily’

Sunlight influences many morphological, biochemical and molecular changes in fruits and the most important is color change associated with the development of pigments. The exposure to sunlight influences the anthocyanin content of the fruit peel. With the aim to understand the influence of bagging of fruits on the mango peel color, anthocyanin and expression of anthocyanin biosynthetic genes, an experiment was conducted by covering fruits of red colored cv. ‘Lily’ with muslin cloth. The observations were recorded for fruits of control (non-bagged) and fruits developing in shade. In bagged fruits, the color of peel changed towards lightness and yellowness. The reduction in anthocyanin was observed up to 17 times in bagged and shaded fruits. We also observed the down-regulation of all anthocyanin biosynthetic genes in fruits under bagged and shaded conditions. This study reports the influence of bagging and shade on anthocyanin biosynthetic genes and subsequent change in the color of fruit peel.     

The Potential of Caprifig Genotypes for Sheltering <Emphasis Type="Italic">Blastophaga psenes</Emphasis> L. for Caprification of Edible Figs

Caprifig (Ficus carica L.) as pollen sources, play a major role in edible fig caprification by Blastophaga psenes L. The present study was carried out to evaluate the potential of three caprifig genotypes (Poozdombali, Kouhi and Kouhaki) for the shelter of B. psenes wasp in Estahban region, Fars province, Iran. Summer (profichi) crop fruits per genotype were harvested in full maturity period and evaluated for five times for the shelter of B. psenes wasp. Significant differences among caprifig genotypes were found for B. psenes number for the three times carried out (0, 21 and 28 days), but they did not show significant differences for two times (7 and 14 days). At day of harvesting, Poozdombali showed the highest B. psenes wasp number (341.33) and Kouhaki had the lowest (200.00) and they showed significant differences for this character in this time. Also, seven days after harvesting, Poozdombali showed the highest wasp number (106.67) and Kouhi and Kouhaki had the lowest (104.33), but not significant difference. Number of B. psenes at the day of harvesting was the highest for all of the genotypes and at 28 days after harvesting was the lowest. Cluster analysis identified two major clusters with several sub-clusters. Caprifig trees with having high B. psenes number are essential for a suitable caprification. Thus, Poozdombali genotype with the highest B. psenes number, is suitable in this important trait to be used for edible figs caprification.     

Genetic Identification and Conservation of Local Turkish Grapevine (<Emphasis Type="Italic">Vitis vinifera</Emphasis> L.) Genotypes on the Edge of Extinction

In the second half of the nineteenth century, intensive renovation of vineyards took place due to the losses caused by phylloxera and local varieties were mostly replaced by several worldwide cultivars. Shift in genotypic structure in favor of modern cultivars resulted in the decrease or even disappearance of regionally typical local varieties. A total of sixty five Turkish grape genotypes, including 5 references (four cultivars and one rootstock), were genotyped with 16 SSR and 15 SRAP markers. Sixteen SSR primers generated a total of 60 SSR amplicons in which 43 were polymorphic with 73.4% average polymorphism percentage. A total of 111 well-resolved clear DNA bands were obtained from 15 SRAP primers. Of these bands, 53 were highly polymorphic with an average of 47.74%. Cluster analysis based on pooled marker data generated a well resolved grouping pattern. The analyzed genotypes grouped basing on their geographical belongings. There were many cultivar pairs on the dendrogram most of which occurred between 0.75 and 0.90 levels. SSR and SRAP data revealed a wide genetic variability as well as certain synonyms among the historical grape varieties cultivated for decades in local vineyards lengthwise the mountainous regions of Konya, Karaman and Mersin provinces. All the genotypes have been maintained in a grapevine germplasm glasshouse. Preservation and use of these endangered genotypes will be helpful to avoid genetic erosion and diversity loss in this part of Turkey. Also, the molecular data generated in this study could be of great use in determining the optimal breeding strategies to allow continued progress in grapevine breeding.     

People and pines 1555<Emphasis Type="Bold">–</Emphasis>1910: integrating ecology,history and archaeology to assess long-term resource use in northern Fennoscandia

Context

Past human land use has received increasing attention as an important driver of ecosystem change also in seemingly natural landscapes. Quantification of historical land use is therefore critical for assessing the degree of human impact and requires integration of ecology, history and archaeology.

Objective

This study aims to assess and compare levels of resource use by different actors during 355 years across a large landscape of northern Sweden.

Method

Data on resource use derived from case studies were extrapolated using demographic data to estimate harvested resources at the landscape scale. Here, we examined the use of the key-specie Scots pine by native Sami peoples and farmers and through commercial logging, and reconstructed historical forest conditions in order to interpret harvest levels and sustainability.

Results

We show that (1) the pre-industrial use of Scots pine resources in Pite Lappmark was sustainable from a landscape perspective, and (2) that the early commercial logging, in contrast, was not sustainable. Large and old Scots pine trees were logged at a very high rate, reaching up to 300 % of the annual ingrowth.

Conclusion

We suggest that historical landscape studies should incorporate analysis at different spatial scales, as such an approach can mirror the overall use of resources. Only then can land use data be applied across larger spatial scales, function as reference values and be compared to those of other regions, time-periods and types of human impact.

     

The Response of Soilless Grown ‘Michele Palieri’ (<Emphasis Type="Italic">Vitis vinifera</Emphasis> L.) Grapevine Cultivar to Deficit Irrigation Under the Effects of Different Rootstocks

Global warming, altering the physiology and irrigation demand of grapevines, has already been perceived in certain premium viticulture regions across the world. Selection of proper rootstocks for especially new cultivars has vital role for a sustainable viticulture under water-deficit conditions. The grapevine cultivar ‘Michele Palieri’ has been finding a good reception on the global markets. The objective of this study was to determine the response of ‘Michele Palieri’ cultivar to deficit irrigation using different rootstocks with distinct genetic origins. Two irrigation regimes (Full Irrigation [FI] and Deficit Irrigation [DI]) were applied to the vines of different grafting combinations of ‘Michele Palieri’ with Kober 5 BB, Richter 99, Richter 110, 140 Ruggeri, 44–53 Malégue or grown on own roots. Two years old vines were cultivated in 60?L pots containing sterile peat under controlled glasshouse conditions. Irrigations were regulated according to soil water matric potential (Ψm) levels using tensiometers. The volume of the irrigation water that has to be applied to attain 100% field capacity was performed as FI, while 50% of FI was considered as DI. The water was transported directly into the pots by micro-irrigation systems consisting of individual spaghetti tubes. The vines of DI treatment showed visible symptoms of mild water stress (e.?g., loss of turgor in shoot tips), but no defoliation or leaf necrosis occurred. DI treatment reduced the gs of ‘Michele Palieri’ scion cultivar in varying levels depending on the rootstock. DI treatment also affected vegetative growth of the scion cultivar in different levels. For example, the greatest decrease (26.7%) in shoot length resulting from DI was determined in ‘Michele Palieri’/5 BB grapevines, followed by own rooted vines (13.1%), while the lowest change (2.4%) was found in vines grafted on 110?R. Overall findings of this study imply that the rootstocks originating from V. berlandiery?×?V. rupestris hybrids (110?R, 99?R, 140?Ru and 44–53?M) better performed in a similar genetic aptitude under deficit irrigation regime while the rootstock 5 BB (V. berlandiery?×?V. rupestris) showed more susceptible responses. On the other hand, the general response of own rooted vines were better than those grafted on 5 BB. Therefore, the use of one of V. berlandiery?×?V. rupestris hybrids may be a better choice for viticulture under semiarid regions.