Hindcasting modelling for restoration and conservation planning: application to stream fish assemblages

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Ecologically Sustainable Exploitation Rates—A multispecies approach for fisheries management

Fisheries management is slowly evolving from its traditional single‐species focus to a more holistic ecosystem‐based approach. Yet, limits for exploitation are almost always set based on single‐species models, treating species as isolated entities. This is problematic since the sustainability of a fishery hinges on its effects on the exploited community as a whole. Here, we develop a novel analytical approach of estimating exploitation rates that are sustainable with respect to the state of whole fish communities. Our approach simultaneously addresses species interactions, environmental covariates and natural variability of population sizes, yet it is framed around a simple and accessible objective. We derive Ecologically Sustainable Exploitation Rates, that is exploitation rates associated with a maximum acceptable probability (determined by management) that any interacting species decreases to an unacceptably low population size. Using models fitted to an exploited fish community, we show how accounting for species interactions constrains the possibilities for ecologically sustainable exploitation. The conventional omission of species interactions may thus result in overestimated exploitation limits. Moreover, our application rendered a counterintuitive result: it suggests that the exploitation of one species should increase, as compared to mean historical levels, for the purpose of conservation of the community as a whole. Such insights could impossibly be gained using single‐species approaches, illustrating the need to adopt multispecies models in fisheries management. Analytical derivation of Ecologically Sustainable Exploitation Rates offers a mean to do so.     

Can underwater refuges protect fish populations against cormorant predation? Evidence from a large‐scale multiple pond experiment

Artificial structures can protect fish against predation by cormorants (Phalacocorax spp.). However, their effectiveness in larger water bodies with different fish communities in the presence of natural vegetation still needs to be explored. Using a large‐scale field experiment with 24 ponds stocked with differently composed fish communities, the present study investigates the extent to which the effect of artificial refuges on fish is species‐specific and determined by the characteristics of the fish community. This study provides strong experimental evidence for artificial refuges protecting fish against predation from cormorants, even in the presence of submerged vegetation. The effect of refuges was, however, highly species‐specific and depended on the composition of the fish community. Strong positive effects of refuges on rudd, Scardinius erythrophthalmus (L.), and roach, Rutilus rutilus (L.), populations were observed, especially in ponds where these species dominated. Overall, the total biomass of young‐of‐the‐year, 1‐year‐old and adult rudd and roach was on average 500, 7 and 15 times lower in ponds without than in ponds with refuges, respectively. No effect of artificial refuges on other fish species was found. This study indicates that artificial refuges can facilitate the coexistence of predation vulnerable fish populations with cormorants in lakes and ponds.     

Mixed stream channel morphologies: implications for fish community diversity

• 1. Stream classification systems are widely used in stream management and restoration. Whereas the principal morphological types of these classification systems are increasingly recognized for their ecological connections, the roles of intermediate and mixed morphologies are still poorly understood, yet may be biologically significant.
• 2. Twenty‐five stream reaches in north‐western Vermont were classified by channel morphology to determine whether fish community diversity differed among pool‐riffle, mixed (i.e. pool‐riffle/cascade, pool‐riffle/other) and forced pool‐riffle stream morphological groups. Stream reach surveys included cross‐sectional surveys, longitudinal profiles, bed substrate characterization, and fish surveys.
• 3. Three fish community diversity measures were calculated: (1) species richness (S); (2) Shannon–Weaver Index (H′); and (3) Simpson's Index (1/D). Multivariate analysis of covariance (MANCOVA) followed by analysis of variance (ANOVA) were used to explore potential differences in fish diversity among stream morphological groups. Fish diversity was significantly different for all three community diversity measures (P?0.05), with pool‐riffle/cascade morphology consistently exhibiting the greatest fish diversity and forced pool‐riffle the lowest.
• 4. These results suggest that fish community diversity is significantly associated with distinct channel morphologies. Generally, pool‐riffle/cascade and pool‐riffle/other stream morphological groups supported habitats that fostered greater species diversity than more homogeneous and uniform pool‐riffle reaches. The observed patterns of diversity are likely to be the result of habitat patches created by variations in flow and other physical characteristics in reaches of mixed morphologies.
• 5. These results support fish sampling schemes that incorporate morphological heterogeneity, such as proportional‐distance designation. Sampling strategies that focus on homogeneous reaches may underestimate diversity, and misrepresent stream condition when fish community data are used in indices of biological integrity (IBIs). Reaches of mixed stream morphologies should be recognized as areas of biological importance in stream and catchment management and in conservation efforts.

Copyright © 2008 John Wiley & Sons, Ltd.     

Environmental determinants of fish community structure in gravel pit lakes

Gravel pit lakes are increasingly common, and there is an urgent need to better understand the functioning of these artificial and disconnected ecosystems. However, our knowledge of the environmental determinants of fish community structure within these types of lakes remains poor. In this study, we quantified the taxonomic diversity, fish species and life‐stage composition in 17 gravel pit lakes sampled in 2012 and 2013 located in south‐west France to determine the potential role of environmental variables (i.e. lake morphology, productivity, water quality and human‐use intensity) as drivers of fish community structure and composition. Our results demonstrated that fish community structure significantly differed between gravel pit lakes, and we notably found that lakes managed for angling hosted higher levels of taxonomic diversity. We also found that young and large lakes supported higher native species biomass and were dominated by native European perch (Perca fluviatilis). Older, smaller and more productive lakes, located closer to the main urban area, supported a higher biomass of non‐native species such as largemouth bass (Micropterus salmoides). Native and non‐native sport fishing species such as northern pike (Esox lucius), pikeperch (Sander lucioperca), common carp (Cyprinus carpio) and cyprinid prey species were positively associated with fishery management effort, suggesting that management practices play also a critical role in shaping fish species composition. Overall, our study demonstrated that fish community composition followed a predictable shift along environmental gradients associated with the maturation of gravel pit lakes and the associated human practices.     

Climate change alters fish community size‐structure,requiring adaptive policy targets

Size‐based indicators are used worldwide in research that supports the management of commercially exploited wild fish populations, because of their responsiveness to fishing pressure. Observational and experimental data, however, have highlighted the deeply rooted links between fish size and environmental conditions that can drive additional, interannual changes in these indicators. Here, we have used biogeochemical and mechanistic niche modelling of commercially exploited demersal fish species to project time series to the end of the 21st century for one such indicator, the large fish indicator (LFI), under global CO₂ emissions scenarios. Our modelling results, validated against survey data, suggest that the LFI's previously proposed policy target may be unachievable under future climate change. In turn, our results help to identify what may be achievable policy targets for demersal fish communities experiencing climate change. While fisheries modelling has grown as a science, climate change modelling is seldom used specifically to address policy aims. Studies such as this one can, however, enable a more sustainable exploitation of marine food resources under changes unmanageable by fisheries control. Indeed, such studies can be used to aid resilient policy target setting by taking into account climate‐driven effects on fish community size‐structure.     

Forage fish fisheries management requires a tailored approach to balance trade‐offs

Ecosystem‐based fishery management requires considering the effects of actions on social, natural and economic systems. These considerations are important for forage fish fisheries, because these species provide ecosystem services as a key prey in food webs and support valuable commercial fisheries. Forage fish stocks fluctuate naturally, and fishing may make these fluctuations more pronounced, yet harvest strategies intended to ameliorate these effects might adversely affect fisheries and communities. Here, we evaluate trade‐offs among a diverse suite of management objectives by simulating outcomes from several harvest strategies on forage fish species. We demonstrate that some trade‐offs (like those between catches and minimizing collapse length) were universal among forage species and could not be eliminated by the use of different control rules. We also demonstrate that trade‐offs vary among forage fish species, with strong trade‐offs between stable, high catches and high‐biomass periods (“bonanzas”) for menhaden‐ and anchovy‐like fish, and counterintuitive trade‐offs for sardine‐like fish between shorter collapses and longer bonanzas. We find that harvest strategies designed to maintain stability in catches will result in more severe collapses. Finally, we show that the ability of assessments to detect rapid changes in population status greatly affects control rule performance and the degree and type of trade‐offs, increasing the risk and severity of collapses and reducing catches. Together, these results demonstrate that while default harvest strategies are useful in data‐poor situations, management strategy evaluations that are tailored to specific forage fish may better balance trade‐offs.     

长江上游珍稀特有鱼类国家级自然保护区干流段鱼类群落结构特征分析

长江上游珍稀特有鱼类国家级自然保护区位于向家坝坝下江段，随着金沙江下游梯级水电站相继蓄水运行和“十年禁渔”政策的实施，保护区干流段鱼类群落可能会发生改变。为探究“十年禁渔”前保护区干流段鱼类群落结构特征，基于该江段2017—2019年渔获物监测数据，对鱼类种类组成、生态类型、群落相似度、物种优势度、生物多样性以及群落结构稳定性等特征进行分析。结果显示，本次调查共采集到鱼类134种，隶属于7目21科83属，其中长江上游特有鱼类有27种，外来物种有12种，分别占总种类数20.15%和8.96%。鱼类群落以底层、产沉性卵、杂食性鱼类为主。等级聚类分析(Cluster)和非度量多维尺度分析(NMDS)显示，在一定的相似性水平上，保护区干流段鱼类的群落类型基本可分为3组，宜宾、泸州与合江可以聚为一组，巴南、江津分别独立成组。保护区干流优势种共有14种，其中瓦氏黄颡鱼是整个研究区域的优势种，在合江站点的优势度最高，IRI值为27.00%。Shannon-Wiener指数、Simpson指数、Margalef指数和Pielou指数变化范围分别为2.725～3.306、0.883～0.942、5.83...     

小江回水区江段鱼类群落结构的时空变动及驱动因素分析

调查小江下游回水区鱼类资源,探讨三峡水库175 m正常蓄水后该江段鱼类群落结构的时空变动特征及其驱动因素,为小江鱼类资源保护提供参考依据。在小江下游渠口、养鹿、高阳和黄石设置4个采样江段,1个位于水库变动回水区,3个位于水库常年回水区。基于2013年和2019年5-7月及10-11月开展的鱼类资源调查数据,采用多元分析方法量化分析小江回水区江段非生物因子时空变动与鱼类群落结构时空变动的关系。结果显示：2013年和2019年共在小江回水区江段采集到鱼类74种,隶属于7目15科56属,其中优势种鱼类15种,长江上游特有鱼类7种,外来鱼类5种;小江常年回水区的鱼类群落结构在2019年发生了明显改变,而变动回水区江段的鱼类群落结构在2013年和2019年间无明显差异;小江常年回水区江段的鱼类群落结构在2013年显示出明显的季节变动特征,而在2019年季节性变动特征不明显;变动回水区江段的鱼类群落结构在2013年和2019年均存在明显的季节变动;总磷含量、磷酸盐含量、水温和流速显著影响小江回水区江段鱼类群落结构的时空分布格局,其中磷酸盐含量和水温是最关键的驱动因素。尽量维持小江变动回水区的自然生...     

沱江中游鱼类资源现状及多样性

为探究“十年禁渔”前沱江中游江段鱼类资源和物种多样性，于2017—2020年对该江段鱼类资源进行了8次调查，并对鱼类种类组成、生态类型、群落相似度、种群优势度、生物多样性以及群落结构稳定性等特征进行分析。结果显示，本次调查共采集鱼类87种，隶属于5目14科52属。其中，长江上游特有鱼类18种，外来物种6种，分别占总种类数的20.69%和6.90%。鱼类群落以底层、缓流型、产沉性卵、杂食性鱼类为主。相对重要性指数(IRI)显示，蛇、鲤等中小型鱼类为优势种。Shannon-Wiener指数、Simpson指数、Margalef指数、Pielou指数变化范围分别为2.700～3.742、0.873～0.968、5.374～11.323、0.737～0.887，表明沱江中游鱼类群落分布均匀。等级聚类分析(Cluster)和非度量多维尺度分析(NMDS)显示，在一定的相似性水平上，沱江中游江段鱼类的群落类型基本可分为3组，莲花山、麻柳坝工业园与铁路沟可以聚为一组，万古庙、五里店水电站、资州大桥、银山镇、二水厂与西林渡口聚为一组，沱桥独立成组。数量/生物量比较曲线分析结果显示，西林渡口和沱桥江段鱼...     

Effectiveness of fishing gears to assess fish assemblage size structure in small lake ecosystems

Measurement of fish body‐size distributions is increasingly used as a management tool to assess fishery status. However, the effects of gear selection on observed fish size structure has not received sufficient attention. Four different gear types (experimental gill nets, fine mesh bag seine, and two different sized mesh trap nets), which are commonly employed in the study area for fisheries surveys, were used to fish in five small (< 200 ha) lakes to evaluate differential catch in terms of species composition and assemblage size distributions. Kolmogorov–Smirnov tests revealed that, out of the five lakes and six comparisons, the four gear types captured fish of statistically similar size distributions in only one instance. Non‐metric multi‐dimensional scaling followed by a multi‐response permutation procedure revealed that the species composition of fish captured by these gears also differs. These results support the notion that multiple gear types should be used to assess body‐size distributions as well as fish assemblage composition.     

A quantitative assessment of fish passage efficiency

In an attempt to restore the connectivity of fragmented river habitats, a variety of passage facilities have been installed at river barriers. Despite the cost of building these structures, there has been no quantitative evaluation of their overall success at restoring fish passage. We reviewed articles from 1960 to 2011, extracted data from 65 papers on fish passage efficiency, size and species of fish, and fishway characteristics to determine the best predictors of fishway efficiency. Because data were scarce for fishes other than salmonids (order Salmoniformes), we combined data for all non‐salmonids for our analysis. On average, downstream passage efficiency was 68.5%, slightly higher than upstream passage efficiency of 41.7%, and neither differed across the geographical regions of study. Salmonids were more successful than non‐salmonids in passing upstream (61.7 vs. 21.1%) and downstream (74.6 vs. 39.6%) through fish passage facilities. Passage efficiency differed significantly between types of fishways; pool and weir, pool and slot and natural fishways had the highest efficiencies, whereas Denil and fish locks/elevators had the lowest. Upstream passage efficiency decreased significantly with fishway slope, but increased with fishway length, and water velocity. An information‐theoretic analysis indicated that the best predictors of fish passage efficiency were order of fish (i.e. salmonids > non‐salmonids), type of fishway and length of fishway. Overall, the low efficiency of passage facilities indicated that most need to be improved to sufficiently mitigate habitat fragmentation for the complete fish community across a range of environmental conditions.     

Ecosystem models for fisheries management: finding the sweet spot

The advent of an ecosystem‐based approach dramatically expanded the scope of fisheries management, creating a critical need for new kinds of data and quantitative approaches that could be integrated into the management system. Ecosystem models are needed to codify the relationships among drivers, pressures and resulting states, and to quantify the trade‐offs between conflicting objectives. Incorporating ecosystem considerations requires moving from the single‐species models used in stock assessments, to more complex models that include species interactions, environmental drivers and human consequences. With this increasing model complexity, model fit can improve, but parameter uncertainty increases. At intermediate levels of complexity, there is a ‘sweet spot’ at which the uncertainty in policy indicators is at a minimum. Finding the sweet spot in models requires compromises: for example, to include additional component species, the models of each species have in some cases been simplified from age‐structured to logistic or bioenergetic models. In this paper, we illuminate the characteristics, capabilities and short‐comings of the various modelling approaches being proposed for ecosystem‐based fisheries management. We identify key ecosystem needs in fisheries management and indicate which types of models can meet these needs. Ecosystem models have been playing strategic roles by providing an ecosystem context for single‐species management decisions. However, conventional stock assessments are being increasingly challenged by changing natural mortality rates and environmentally driven changes in productivity that are observed in many fish stocks. Thus, there is a need for more tactical ecosystem models that can respond dynamically to changing ecological and environmental conditions.     

Balancing conservation and recreational fishery objectives for a threatened fish species,the Murray cod,Maccullochella peelii

Murray cod Maccullochella peelii (Mitchell) is a large, iconic Australian fish species targeted by anglers but also listed as nationally threatened. A consultative process that included conservation and fishery interests helped to develop a population model for this species and agree on management scenarios to be tested. The modelled scenarios illustrated that threats to populations (risk of decline) can be substantially reduced and catch rates increased through harvest slot length limits (HSLL) rather than minimum legal limits (MLL). A 600‐ to 1000‐mm HSLL provided lower risk of decline and greater catch rates than the existing 500‐mm MLL, but better results were achieved with a 400‐ to 600‐mm HSLL. Importantly, a range of other impacts (fish kills, stocking, thermal impacts, larval mortalities, habitat changes) were recognised and incorporated. This study provides an example of the utility of a population model to improve management decision‐making for both conservation and fishery objectives.     

European small pelagic fish distribution under global change scenarios

The spectre of increasing impacts on exploited fish stocks in consequence of warmer climate conditions has become a major concern over the last decades. It is now imperative to improve the way we project the effects of future climate warming on fisheries. While estimating future climate‐induced changes in fish distribution is an important contribution to sustainable resource management, the impacts on European small pelagic fish—representing over 50% of the landings in the Mediterranean and Black Sea between 2000 and 2013—are yet largely understudied. Here, we investigated potential changes in the spatial distribution of seven of the most harvested small pelagic fish species in Europe under several climate change scenarios over the 21st century. For each species, we considered eight Species Distribution Models (SDMs), five General Circulation Models (GCMs) and three emission scenarios (the IPCC Representative Concentration Pathways; RCPs). Under all scenarios, our results revealed that the environmental suitability for most of the seven species may strongly decrease in the Mediterranean and western North Sea while increasing in the Black and Baltic Seas. This potential northward range expansion of species is supported by a strong convergence among projections and a low variability between RCPs. Under the most pessimistic scenario (RCP8.5), climate‐related local extinctions were expected in the south‐eastern Mediterranean basin. Our results highlight that a multi‐SDM, multi‐GCM, multi‐RCP approach is needed to produce more robust ecological scenarios of changes in exploited fish stocks in order to better anticipate the economic and social consequences of global climate change.     

Relative importance of local and landscape variables on fish assemblages in streams of Brazilian savanna

Understanding variability in the composition of aquatic assemblages requires a multiscale perspective, since processes operating at different spatial scales (from regional to local) drive the community assembly. Here, the relative importance of environmental variables on fish species composition in streams of the Brazilian savanna (Cerrado) is assessed and quantified at local and landscape scales. The importance of both local and landscape environmental variables in structuring fish assemblages was supported. Local variables explained a substantially higher amount of variance of fish assemblages than landscape variables. However, the shared explanation indicate that landscape variables had a complementary effect. The streams sampled were mostly headwaters at similar altitudes and with similar watershed sizes, so the sensitivity of the fish assemblages, even to small landscape gradients, is highlighted. Maintaining these important instream habitat characteristics close to natural conditions seems to be essential for conserving stream fish species, and for this, the landscape context should be taken into account. Considering the near‐pristine condition of the streams studied, these findings can be used as a reference for further studies addressing the effects of human modifications on stream fish biodiversity of the Cerrado.     

Changes in life history and ecological characteristics of coral reef fish catch composition with increasing fishery management

Abstract Length, life history and ecological characteristics of landed fish communities were studied over a 10‐year period to test theories of fishing disturbance during a time of increased gear and closure management in heavily utilised fisheries. It was predicted that with greater management restrictions: (1) the earliest and fastest responses in the fishery will be seen in those species with faster turnovers, or relatively lower vulnerabilities to fishing; (2) the fishery would transition to a landed catch with higher mean trophic levels, and greater mean body lengths. In addition, the removal of a non‐selective, small‐mesh seine nets should benefit the catch of gears that previously had the greatest species selectivity overlap with the seine net. Many predictions were supported, although maximum lengths and lengths at maturity responded more rapidly than anticipated. The response to eliminating the non‐selective seine net was a more rapid increase in sizes caught by gears with a larger overlap in size (hook and lines) than species selectivity (gill nets). The simultaneous comparison of management systems over time indicates that open‐access fishing grounds can benefit from restrictions imposed in adjacent fishing grounds. The study indicated that multi‐species coral reef fisheries management objectives of maximising yields, as well as maintaining the fish community’s life‐history diversity, require management trade‐offs that balance local socio‐economic and biodiversity needs.     

Assessing long‐term fish responses and short‐term solutions to flow regulation in a dryland river basin

Water resource development and non‐native species have been cited as primary drivers associated with the decline of native fishes in dryland rivers. To explore this topic, long‐term trends in the fish community composition of the Bill Williams River basin were studied over a 30‐year period (Arizona, USA). We sampled 31 sites throughout the basin that were included in fish surveys by Arizona Game and Fish in 1994–97 and the Bureau of Land Management in 1979–80. We found that non‐native species have proliferated throughout the entire basin, with greater densities in the lower elevations. Native species have persisted throughout most of the major river segments, but have experienced significant declines in frequency of occurrence and abundance in areas also containing high abundances of non‐native species. Next, we assessed the short‐term response of the fish assemblage to an experimental flood event from the system's only dam (i.e. Alamo Dam). In response to the flood, we observed a short‐term reduction in the abundance of non‐native species in sites close to the dam, but the fish assemblage returned to its preflood composition within 8 days of the event, with the exception of small‐bodied fish, which sustained lower postflood densities. Our findings demonstrate the importance of natural flow regime on the balance of native and non‐native species at the basin scale within dryland rivers and highlight minimal effects on non‐native fishes in response to short duration flood releases below dams.     

Moving beyond fitting fish into equations: Progressing the fish passage debate in the Anthropocene

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