The effects of silicon fertilizer on denitrification potential and associated genes abundance in paddy soil

This study evaluated the effect of silicate fertilizer on denitrification and associated gene abundance in a paddy soil. A consecutive trial from 2013 to 2015 was conducted including the following treatments: control (CK), mineral fertilizer (NPK), NPK plus sodium metasilicate (NPK + MSF), and NPK plus slag-based silicate fertilizer (NPK + SSF). Real-time quantitative PCR (qPCR) was used to analyze the abundances of nirS, nirK, and nosZ genes. Potential N₂O emissions and ammonium and nitrate concentrations were related to the nirS and nirK gene abundance. Compared with the NPK treatments, the addition of a Si fertilizer decreased N₂O emission rates and denitrification potential by 32.4–66.6 and 22.0–59.2%, respectively, which were probably related to increased rice productivity, soil Fe availability, and soil N depletion. The abundances of nirS and nirK genes were decreased by 17.7–35.8% and 21.1–43.5% with addition of silicate fertilizers, respectively. Rates of total N₂O and N₂O from denitrification (DeN₂O) emission were positively correlated with the nirS and nirK gene abundance. Nitrate, exchangeable NH₄ ⁺, and Fe concentrations were the main factors regulating the nirS and nirK gene abundance. Silicate fertilization during rice growth may serve as an effective approach to decreasing N₂O emissions.     

长期施肥处理对玉米生长期潮土微生物生物量和活度的影响

以1989年建立的中国科学院封丘农田生态系统国家试验站的长期定位试验为平台,研究经18a连续不同施肥处理后玉米季土壤微生物生物量碳氮和微生物活度的动态变化及其与土壤有机碳之间的相互关系,并探讨施肥措施对土壤微生物及其活性的影响。施肥处理包括:(1)有机肥(OM);(2)1/2化肥和1/2有机肥(1/2OM+1/2NPK);(3)氮磷钾肥(NPK);(4)氮磷肥(NP);(5)磷钾肥(PK);(6)氮钾肥(NK);(7)不施肥,即对照(CK)7个处理。结果表明,微生物生物量碳氮和微生物活度在玉米生长期内均有明显的时间变异性,其中微生物生物量碳与微生物活度的动态变化比较一致,其间的极显著相关关系表明潮土微生物生物量碳的变化可以在很大程度上代表土壤微生物活度的变化。施肥制度显著影响微生物生物量碳氮和微生物活度的变化,总体趋势为OM1/2OM+1/2NPKNPKNPPKNKCK,表明OM有利于保持土壤的生物化学环境及促进土壤的生物学活性;与OM处理相比,化学肥料的长期施用有降低土壤微生物生物量和微生物活度的趋势,尤其是缺素处理的表现更为明显,其中以缺磷处理的表现最为严重。土壤微生物生物量碳氮、微生物活度与土壤有机碳变化均呈极显著正相关。     

The accumulation and transfer of arsenic and mercury in the soil under a long-term fertilization treatment

Purpose

The North China Plain (NCP) is a strategic grain production base in China with a wild distribution of fertile soils. During the past 20 years, high-input intensive agriculture with excess chemical fertilizer application has sustained high grain yields, but may have resulted in contamination of some elements in farmland. In this study, the accumulation and transfer of arsenic (As) and mercury (Hg) in typical Calcaric Fluvisols with long-term different fertilization practices were investigated.

Materials and methods

Field experiments with seven treatments were launched in 1989, and soil and plant samples were collected and analyzed periodically. The treatments include OM (organic manure), OM?+?NPK (50 % organic manure?+?50 % chemical fertilizer), NPK, NP, PK, NK, and CK (the control experiment with no fertilizer).

Results and discussion

With over 20 years (1989–2009) of cultivation, various extents of As and Hg accumulations were really observed in the soil. The higher As and Hg contents were found in P fertilizers than those in N, K, or OM fertilizers. As a result, the long-term P fertilization slightly promoted Hg accumulations with decreased soil Hg concentrations in the order of NPK?≈?NP?≈?PK?≈?OM?+?NPK?>?OM?>?NK?≈?CK, which was similar to the order of crop yields. At the tillage layer (0–20 cm), Hg accumulation in the soil was enhanced by crop production, due to the highly accumulated Hg in plant roots finally remained in the soil. However, no significant differences of soil As concentrations can be found between treatments with and without P fertilizers probably due to water leaching and plant uptake.

Conclusions

Soil As and Hg were mainly contributed by fertilizers, irrigation, and atmospheric deposition in recent years, but they did not exhibit in significant accumulations in the soil. The contents of As and Hg were not above the critical safe levels of soils for crop production (As, <30 mg kg^?1; Hg, <500 μg kg^?1). Arsenic and Hg tended to move downward in the soil profile and the movement was hindered by clay minerals.

     

Soil Total Nitrogen and Natural 15Nitrogen in Response to Long-Term Fertilizer Management of a Maize–Wheat Cropping System in Northern China

The Fengqiu long-term field experiment was established to examine effects of organic manure and mineral fertilizers on soil total nitrogen (N) and natural ¹⁵N abundance. Fertilizer regimes include organic manure (OM), one-half N from organic manure plus one-half N from mineral N fertilizer (1/2OMN), mineral fertilizers [N–phosphorus (P)–potassium (K), NP, NK, PK], and a control. Organic manure (OM and 1/2OMN) significantly increased soil total N and δ¹⁵N, which was expected as a great amount of the N applied remained in soils. Mineral NPK fertilizer and mineral NP fertilizer significantly increased total N and slightly increaed δ¹⁵N. Phosphorus-deficient fertilization (NK) and N-deficient fertilization (PK) had no effect on soil total N. Significantly greater δ¹⁵N was observed in the NK treatment as compared to the control, suggesting that considerable N was lost by ammonia (NH₃) voltalization and denitrification in this P-deficiency fertilization regime.     

Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China

Background, Aims, and Scope  Knowledge about shifts of microbial community structure and diversity following different agricultural management practices could improve our understanding of soil processes and thus help us to develop sound management strategies. A long-term fertilization experiment was established in 1989 at Fengqiu (35°00′N, 114°24′E) in northern China. The soil (sandy loam) is classified as aquic inceptisols and has received continuous fertilization treatments since then. The fertilization treatments included control (CK, no fertilizer), chemical fertilizers nitrogen (N) and potassium (K) (NK), phosphorous (P) and K (PK), NP, NPK, organic manure (OM), and half chemical fertilizers NPK plus half organic manure (1/2NPKOM). The objective of this study was to examine if the microbial community structure and diversity were affected by the long-term fertilization regimes. Materials and Methods  Soil samples were collected from the long-term experimental plots with seven treatments and four replications in April 2006. Microbial DNAs were extracted from the soil samples and the 16S rRNA genes were PCR amplified. The PCR products were analyzed by DGGE, cloning and sequencing. The bacterial community structures and diversity were assessed using the DGGE profiles and the clone libraries constructed from the excised DGGE bands. Results  The bacterial community structure of the OM and PK treatments were significantly different from those of all other treatments. The bacterial community structures of the four Ncontaining treatments (NK, NP, NPK and 1/2NPKOM), as well as CK, were more similar to each other. The changes in bacterial community structures of the OM and PK treatments showed higher richness and diversity. Phylogenetic analyses indicated that Proteobacteria (30.5%) was the dominant taxonomic group of the soil, followed by Acidobacteria (15.3%), Gemmatimonadetes (12.7%), etc. Discussion  Irrespective of the two fertilization treatments of OM and PK, the cluster analysis showed that bacterial communities of the remaining five treatments of CK, NK, NP, NPK and 1/2NPKOM seemed to be more similar to each other, which indicated the relatively weak effects of the four N-containing treatments on soil bacterial communities. N fertilizer may be considered as a key factor to counteract the effects of other fertilizers on microbial communities. Conclusions  Our results show that long-term fertilization regimes can affect bacterial community structure and diversity of the agricultural soil. The OM and PK treatments showed a trend towards distinct community structures, higher richness and diversity when compared to the other treatments. Contrasting to the positive effects of OM and PK treatments on the bacterial communities, N fertilizer could be considered as a key factor in the soil to counteract the effects of other fertilizers on soil microbial communities. Recommendations and Perspectives  Because of the extremely high abundance and diversity of microorganisms in soil and the high heterogeneity of the soil, it is necessary to further examine the effects of fertilization regimes on microbial community and diversity in different type soils for comprehensively understanding their effects through the appropriate combination of molecular approaches. ESS-Submission Editor: Chengrong Chen, PhD (c.chen@griffith.edu.au)     

长期定位施肥对潮土腐植酸含量及其相关因素的影响

利用中国科学院封丘农业生态国家实验站潮土农田生态系统养分平衡长期定位试验地,研究不同施肥处理对春秋两季土壤腐植酸含量、微生物生物量碳及转化酶活性的影响。结果发现,与不施肥对照相比,单施NK或单施PK对土壤pH和有机碳含量均没有显著影响;单施有机肥、施NPK化肥、1/2 OM + 1/2 NPK有机无机配施以及施NP等4种处理均显著抑制了土壤pH的升高,提高了土壤有机碳与全氮含量;其中单施有机肥还显著提高了土壤腐殖质中胡敏酸的含量以及微生物生物量碳和转化酶活性,有机肥与化肥配施效果次之。结果表明,长期施用有机肥更有利于提高土壤肥力质量与健康质量。     

Arbuscular mycorrhizal fungal diversity, external mycelium length, and glomalin-related soil protein content in response to long-term fertilizer management

Purpose

Arbuscular mycorrhizal (AM) fungi are crucial for ecosystem functioning and can contribute to the formation and maintenance of soil aggregates through the exudation of glomalin by extraradical hyphae. Monitoring fertilization effects on AM fungi may help us to develop sound management strategies. The objectives of this study were to investigate the impacts of long-term fertilization on AM fungal parameters and to find out the key factor that affects the diversity and function of AM fungi.

Materials and methods

A long-term fertilization experiment established in a sandy loam soil at northern China has received continuous fertilization treatments for 21 years, including control; mineral fertilizers of NK, PK, NP, and NPK; organic manure (OM); and half organic manure N plus half mineral fertilizer N (1/2 OMN). Top soil samples (0–15 cm) from three individual plots per treatment were collected for the analysis of chemical properties and fungal parameters. The population size of soil AM fungi was determined by real-time PCR, and the community composition was analyzed using PCR-denature gradient gel electrophoresis (DGGE), cloning, and sequencing techniques. The external mycelium of AM fungi was assessed using the grid-line intersect method, and the glomalin-related soil protein (GRSP) was extracted with citrate solution using bovine serum albumin as a standard.

Results and discussion

Long-term fertilization significantly increased (P?<?0.05) soil organic C content, AM fungal population, species richness (R), Shannon–Wiener index (H), and GRSP content, except for the P-deficiency (NK) fertilization treatment. OM had a significantly greater (P?<?0.05) impact on AM fungal population and GRSP content compared to mineral fertilizers but significantly decreased the length of external mycelium compared to the control (P?<?0.05). Fertilization also changed the community composition of AM fungi, and the P-deficiency treatment again had the slightest influence. In addition, most species recovered from the DGGE profiles belonged to three genera, Glomus, Diversispora, and Archaeospora. Redundancy analysis showed that the population size and species richness of AM fungi and the GRSP content all significantly correlated to soil organic C content (P?<?0.05).

Conclusions

Long-term P-containing fertilization, especially the application of OM, greatly increased the population size, species richness, and species diversity of AM fungi, as well as the contents of GRSP and soil organic C, but tended to decrease the length of external mycelium, while the P-deficiency fertilization had no such effect, suggesting that P was the key factor to maintain soil fertility as well as soil AM fungal diversity in this sandy loam soil.     

长期施肥对黄壤有机碳平衡及玉米产量的影响

基于长期定位试验,以黔中典型黄壤为研究对象,采用单因素方差分析、可持续性指数、稳定性指数等方法对长期定位试验获取的数据进行分析和比较,以探讨长期不同施肥处理对黄壤有机碳含量、有机碳平衡量、玉米产量稳定性、可持续性及其相互关系的影响。结果表明:(1)与施化肥和对照处理相比,施有机肥处理土壤有机碳含量明显升高,按大小排序依次为:MMNPK1/2M+1/2NPK1/4M+3/4NPK;(2)施有机肥处理黄壤有机碳平衡量为正值,且随有机肥施用量增加而增加,相反,施化肥和对照处理均为负值,大小依次为:MNPK、M1/2M+1/2NPK1/4M+3/4NPKNPKNKNPN、CKPK,各处理差异显著;(3)有机肥与化肥配施、有机肥单施及氮磷钾化肥协调施用更有利于提高玉米产量,排序为:MNPK1/4M+3/4NPK、1/2M+1/2NPKNPK、MNPNK、PK、NCK;(4)适量有机肥与化肥配施可提高玉米产量稳定性和可持续性(可持续性指数0.6,变异系数0.3),其中,1/4M+3/4NPK处理玉米产量稳定性和持续性最好;(5)玉米年产量与黄壤有机碳平衡量相关度较高,而玉米可持续性、稳定性则主要受有机碳含量影响。综上,有机肥与化肥配施有利于黄壤有机碳含量提升、玉米维持高产稳产。按适量"减肥"原则,以25%有机肥配施75%氮磷钾化肥效果最佳。     

<Emphasis Type="Italic">Trichoderma</Emphasis> improves the growth of <Emphasis Type="Italic">Leymus chinensis</Emphasis>

Bio-fertilizer application has been proposed as a strategy for enhancing soil fertility, regulating soil microflora composition, and improving crop yields, and it has been widely applied in the agricultural yields. However, the application of bio-fertilizer in grassland has been poorly studied. We conducted in situ and pot experiments to investigate the practical effects of different fertilization regimes on Leymus chinensis growth, with a focus on the potential microecological mechanisms underlying the responses of soil microbial composition. L. chinensis biomass was significantly (P?<?0.05) increased by treatment with 6000 kg ha^?1 of Trichoderma bio-fertilizer compared with other treatments. We found a positive (R² =?0.6274, P <?0.001) correlation between bacterial alpha diversity and L. chinensis biomass. Hierarchical cluster analysis and nonmetric multidimensional scaling (NMDS) revealed that soil bacterial and fungal community compositions were all separated according to the fertilization regime used. The relative abundance of the most beneficial genera in bio-fertilizer (BOF) (6000 kg ha^?1Trichoderma bio-fertilizer) was significantly higher than in organic fertilizer (OF) (6000 kg ha^?1 organic fertilizer) or in CK (non-amend fertilizer), there the potential pathogenic genera were reduced. There were significant negative (P?<?0.05) correlations between L. chinensis biomass and the relative abundance of several potential pathogenic genera. However, the relative abundance of most beneficial genera were significantly (P?<?0.05) positively correlated with L. chinensis biomass. Soil properties had different effects on these beneficial and on these pathogenic genera, further influencing L. chinensis biomass.     

Effects of biochar on Cd and Pb mobility and microbial community composition in a calcareous soil planted with tobacco

An experiment was conducted with tobacco (Nicotiana tabacum L.) grown in a Cd- and Pb-contaminated calcareous soil amended with 0.0, 1.0, 2.5, and 5.0% (w/w) tobacco stalk biochar (BC). The BC amendment significantly increased organic matter, total C, N, P, and K contents of soil, and the C/N ratio. Bioavailable metal concentrations (DTPA extraction) decreased by increasing BC application rate. The 5.0% BC amendment significantly decreased the DTPA-extractable Cd and Pb by 10.4 and 13.6%, respectively. Correspondingly, the bioaccumulation and translocation factors of Cd and Pb also decreased by increasing the BC addition rates and this indicated that BC inhibited the uptake and transfer of both Cd and Pb by tobacco plants. Moreover, high-throughput sequencing revealed that BC increased Chao1 richness, Shannon’s diversity and Simpson’s diversity of bacterial communities of soil. The relative abundance and genera composition of Adhaeribacter, Rhodoplanes, Pseudoxanthomonas, and Candidatus Xiphinematobacter increased under BC treatments, while those of Kaistobacter, Lacibacter, and Pirellula decreased. Overall, BC increased soil nutrients (C, N, P, and K contents), enhanced bacterial diversity indexes and richness, and changed the bacterial community composition, which may all have contributed to reduce the mobility and bioavailability of both Cd and Pb in a calcareous soil.     

Response of microbial diversity to C:N:P stoichiometry in fine root and microbial biomass following afforestation

Soil samples were collected in June and October from areas with three land-use types, i.e., Robinia pseudoacacia L. (RP), Caragana korshinskii Kom. (CK), and abandoned land (AL), of which the former two were afforested areas, whereas the latter was not. These areas were converted from similar farmlands 40 years prior. Illumina sequencing of 16S rRNA gene and fungal ITS gene was used to analyze soil bacterial and fungal diversity. Additionally, plant communities, soil properties, fine root biomass, and C, N, and P levels in fine root and microbial biomass were estimated. Compared to AL, the C:N:P stoichiometry in fine root and microbial biomass in the afforested lands was synchronously changed, especially the N:P ratio. Soil microbial diversities were affected by afforestation and were more related to N:P ratio than C:P and C:N ratios. Moreover, Alpha-proteobacteria, Gamma-proteobacteria, and Bacteroidetes were significantly more abundant in afforested soils than in the AL soil, and the abundances of Actinobacteria, Chloroflexi, Cyanobacteria, and Nitrospirae ranked as AL > RP or CK. For fungal taxa, Ascomycota abundance responded positively to afforestation, whereas Basidiomycota abundance responded negatively. Changes of soil microbial taxa were significantly correlated with the N:P ratio in fine root and microbial biomass, which explained 54.1 and 55% of the total variation in bacterial and fungal taxa, respectively. Thus, our results provide evidence that compositions of soil microbial communities are linked to the N:P ratio in the plant-soil system.     

Effect of P stoichiometry on the abundance of nitrogen-cycle genes in phosphorus-limited paddy soil

Previous studies have shown that phosphorus addition to P-limited soils increases gaseous N loss. A possible explanation for this phenomenon is element stoichiometry (specifically of C:N:P) modifying linked nutrient cycling, leading to enhanced nitrification and denitrification. In this study, we investigated how P stoichiometry influenced the dynamics of soil N-cycle functional genes. Rice seedlings were planted in P-poor soils and incubated with or without P application. Quantitative PCR was then applied to analyze the abundance of ammonia-oxidizing (amoA) and denitrifying (narG nirK, nirS, nosZ) genes in soil. P addition reduced bacterial amoA abundance but increased denitrifying gene abundance. We suggest this outcome is due to P-induced shifts in soil C:P and N:P ratios that limited ammonia oxidization while enhancing P availability for denitrification. Under P application, the rhizosphere effect raised ammonia-oxidizing bacterial abundance (amoA gene) and reduced nirK, nirS, and nosZ in rhizosphere soils. The change likely occurred through greater C input and O₂ release from roots, thus altering C availability and redox conditions for microbes. Our results show that P application enhances gaseous N loss potential in paddy fields mainly through stimulating denitrifier growth. We conclude that nutrient availability and elemental stoichiometry are important in regulating microbial gene responses, thereby influencing key ecosystem processes such as denitrification.

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Graphical abstract ?

     

Bacterial diversity in the rhizosphere of two phylogenetically closely related plant species across environmental gradients

Purpose

Rhizosphere soil bacterial communities are crucial to plant growth, health, and stress resistance. In order to detect how bacterial communities associated with the rhizosphere of phylogenetically related plant species vary in terms of composition, function, and diversity, we investigated the rhizosphere bacterial community structure of two perennial shrub species, Caragana jubata and Caragana roborovskyi, under natural field conditions in northwest China and analyzed the influence of soil properties and environmental factors.

Materials and methods

Eighteen root samples, eight for C. jubata, and ten for C. roborovskyi, along with any adherent soil particles, were collected from multiple sites in northwest China. The rhizosphere soil was washed from the roots, and bacterial communities were analyzed using Illumina MiSeq sequencing of 16S rRNA gene amplicons. Then, α-diversity and β-diversity were calculated using QIIME.

Results and discussion

Across species, Proteobacteria (29 %), Actinobacteria (15 %), Chloroflexi (10 %), Acidobacteria (10 %), Bacteroidetes (8 %), Firmicutes (8 %), Planctomycetes (7 %), Gemmatimonadetes (4 %), and Verrucomicrobia (3 %) were the most abundant phyla in the rhizosphere of C. jubata and C. roborovskyi. However, principal co-ordinates analysis indicated strong interspecific patterns of bacterial rhizosphere communities. Further, the richness of Proteobacteria, Acidobacteria, Bacteroidetes, Verrucomicrobia, Firmicutes, and Nitrospirae was significantly higher in the rhizosphere of C. jubata compared with C. roborovskyi, while the opposite was found for Actinobacteria and Cyanobacteria. However, the Shannon index showed no significant difference in α-diversity between C. jubata and C. roborovskyi. Distance-based redundancy analysis indicated that soil properties and environmental factors exerted strong influences on the structure of the rhizosphere bacterial community and explained 47 and 46 % of community variances between samples, respectively.

Conclusions

Our results showed strong interspecific clustering of the bacterial rhizosphere communities of C. roborovskyi and C. jubata. Altitude explained most of the variation in the composition of bacterial rhizosphere communities of C. roborovskyi and C. jubata, followed by soil pH, water content, organic matter content, total nitrogen content, and mean annual rainfall.

     

Altered precipitation seasonality impacts the dominant fungal but rare bacterial taxa in subtropical forest soils

How soil microbial communities respond to precipitation seasonality change remains poorly understood, particularly for warm-humid forest ecosystems experiencing clear dry-wet cycles. We conducted a field precipitation manipulation experiment in a subtropical forest to explore the impacts of reducing dry-season rainfall but increasing wet-season rainfall on soil microbial community composition and enzyme activities. A 67% reduction of throughfall during the dry season decreased soil water content (SWC) by 17–24% (P < 0.05), while the addition of water during the wet season had limited impacts on SWC. The seasonal precipitation redistribution had no significant effect on the microbial biomass and enzyme activities, as well as on the community composition measured with phospholipid fatty acids (PLFAs). However, the amplicon sequencing revealed differentiated impacts on bacterial and fungal communities. The dry-season throughfall reduction increased the relative abundance of rare bacterial phyla (Gemmatimonadetes, Armatimonadetes, and Baoacteriodetes) that together accounted for only 1.5% of the total bacterial abundance by 15.8, 40, and 24% (P < 0.05), respectively. This treatment also altered the relative abundance of the two dominant fungal phyla (Basidiomycota and Ascomycota) that together accounted for 72.4% of the total fungal abundance. It increased the relative abundance of Basidiomycota by 27.4% while reduced that of Ascomycota by 32.6% (P < 0.05). Our results indicate that changes in precipitation seasonality can affect soil microbial community composition at lower taxon levels. The lack of community-level responses may be ascribed to the compositional adjustment among taxonomic groups and the confounding effects of other soil physicochemical variables such as temperature and substrate availability.     

Carbon sequestration dynamic,trend and efficiency as affected by 22‐year fertilization under a rice–wheat cropping system

The maintenance and accumulation of soil organic carbon (SOC) in agricultural systems is critical to food security and climate change, but information about the dynamic trend and efficiency of SOC sequestration is still limited, particularly under long‐term fertilizations. In a typical Purpli‐Udic Cambosols soil under subtropical monsoon climate in southwestern China this study thus estimated the dynamic, trend and efficiency of SOC sequestration after 22‐year (1991–2013) long‐term inorganic and/or organic fertilizations. Nine fertilizations under a rice–wheat system were examined: control (no fertilization), N, NP, NK, PK, NPK, NPKM (NPK plus manure), NPKS (NPK plus straw), and 1.5NPKS (150% NPK plus straw). Averagely, after 22‐years SOC contents were significantly increased by 4.2–25.3% and 10.2–32.5% under these fertilizations than under control conditions with the greatest increase under NPKS. The simulation of SOC dynamic change with an exponential growth equation to maximum over the whole fertilization period predicted the SOC level in a steady state as 18.1 g kg^?1 for NPKS, 17.4 g kg^?1 for 1.5NPKS, and 14.5–14.9 g kg^?1 for NK, NP, NPK, and NPKM, respectively. Either inorganic, organic or their combined fertilization significantly increased crop productivity and C inputs that were incorporated into soil ranging from 0.91 to 4.63 t (ha · y)^?1. The C sequestration efficiency was lower under NPKM, NPKS, and 1.5NPKS (13.2%, 9.0%, and 10.1%) than under NP and NPK (17.0% and 14.4%). The increase of SOC was asymptotical to a maximum with increasing C inputs that were variedly enhanced by different fertilizations, indicating an existence of SOC saturation and a declined marginal efficiency of SOC sequestration. Taken all these results together, the combined NPK plus straw return is a suitable fertilizer management strategy to simultaneously achieve high crop productivity and soil C sequestration potential particularly in crop rotation systems.     

Effects of cover crop in an apple orchard on microbial community composition,networks, and potential genes involved with degradation of crop residues in soil

Changes in the soil microbial communities and networks were monitored after planting the cover crop for 9 years. The field experiment included plots with a cover crop and without a cover crop but with weed control, and two subplots with or without chemical fertilizer (192 kg N ha^?1, 108 kg P₂O₅ ha^?1, and 168 kg K₂O ha^?1 each year). After applying the cover crop and chemical fertilizer for 9 years, the composition and activity of bacterial and fungal communities changed significantly (p?<?0.05), with the cover crop had greater effects than the chemical fertilizer on the composition of the soil microbial community. The relative abundances of 22 selected genera (in Firmicutes and Bacteroidetes) and two selected classes (Ascomycota) related to cover crop residue degradation increased significantly in the presence of the cover crop (p?<?0.05). Network analysis showed that the cover crop decreased the number of positive links between bacterial and fungal taxa by 25.33%, and increased the negative links by 22.89%. The positive links among bacterial taxa increased by 16.63% with the cover crop, mainly among Proteobacteria (increase of 39), Firmicutes (16), Actinobacteria (five), and Bacteroidetes (10). The links among fungal taxa were less than among bacterial taxa and were not significantly affected by cover crop. Taxa such as Thaumarchaeota, unidentified_Nitrospiraceae, unidentified_Nitrosomonadaceae, Faecalibacterium, Coprococcus_3, and Ruminococcaceae_NK4A214_group dominated the network without the cover crop but they were not dominant with the cover crop. The relative abundances of potential genes involved with the degradation of cellulose, hemicellulose, and cello-oligosaccharides increased significantly with the cover crop. Therefore, the SOC and TN contents were enhanced by the cover crop with the increase of the soil enzyme activities. Thus, the apple yield was improved by the cover crop.     

Micronutrients (Fe,Mn, Zn and Cu) balance under long-term application of fertilizer and manure in a tropical rice-rice system

Purpose

The balance of micronutrients in soils is important in nutrient use efficiency, environmental protection and the sustainability of agro-ecological systems. The deficiency or excess of micronutrients in the plough layer may decrease crop yield and/or quality. Therefore, it is essential to maintain appropriate levels of micronutrients in soil, not only for satisfying plant needs in order to sustain agricultural production but also for preventing any potential build-up of certain nutrients.

Materials and methods

A long-term fertilizer experiment started in 1969 at Central Rice Research Institute, Cuttack, Odisha, India. Using this experiment, a study was conducted to analyze the balance of micronutrients and their interrelationship. The experiment was composed of ten nutrient management treatments viz. control; nitrogen (N); N + phosphorus (NP); N + potassium (NK); nitrogen, phosphorus and potassium (NPK); farmyard manure (FYM); N + FYM; NP + FYM; NK + FYM; and NPK + FYM with three replications. Micronutrients in soil (total and available), added fertilizers and organic manures and in rice plant were analyzed. Besides, atmospheric deposition of the micronutrients to the experimental site was also calculated. A micronutrient balance sheet was prepared by the difference between output and input of total micronutrients.

Results and discussion

Application of FYM alone or in combination with chemical fertilizer increased the diethylenetriamine pentaacetate (DTPA)-extractable Fe, Mn and Zn over the control treatment. The treatment with NPK + FYM had the highest soil DTPA-extractable Fe, Mn, Zn and Cu after 41 years of cropping and fertilization. Application of chemical fertilizers without P decreased the DTPA-extractable Zn over the control while the inclusion of P in the fertilizer treatments maintained it on a par with the control. The application of P fertilizer and FYM either alone or in combination significantly increased the contents of total Fe, Mn, Zn and Cu in soil mainly due to their micronutrient content and atmospheric depositions. A negative balance of Zn was observed in the N, NP, NK and NPK treatments, while a positive balance observed in the remaining treatments. The balance of Mn was negative in all the treatments, due to higher uptake by the rice crop than its addition.

Conclusions

Long-term application of chemical fertilizers together with FYM maintained the availability of micronutrients in soil and, thus, their uptake by rice crop.

     

Abundance and diversity of sulphur-oxidising bacteria and their role in oxidising elemental sulphur in cropping soils

There is an increasing interest in elemental S as a S fertiliser source, but to be available to plants, elemental S has to be oxidised to sulphate. Elemental S oxidation is known to be affected by soil properties and environmental conditions, but it is still unclear if elemental S oxidation is related to the abundance and diversity of S-oxidising bacteria in cropping soils. In this study, we investigated the abundance and diversity of S-oxidising bacteria by targeting a functional gene (soxB) and assessed their relationship with elemental S oxidation in ten cropping soils. Positive correlations between soil C, N and S contents on the one hand and the abundances of soxB and 16S ribosomal deoxyribonucleic acid (rRNA) genes on the other suggested that the abundances of S oxidising bacteria in particular and of bacteria in general depend on soil C and nutrient supply. Both soxB and 16S rRNA gene abundances were significantly correlated with the oxidation rate of elemental S (P < 0.05). In addition, more than 80% of the variation in the oxidation rate of elemental S could be explained by the combination of soxB or 16S rRNA gene abundances and soil pH, suggesting that pH not only affected bacterial abundances but also their activity during elemental S oxidation. Clone libraries constructed with the soxB primers showed genera belonging to Alphaproteobacteria, Betaproteobacteria and Deltaproteobacteria and Actinobacteria. The phylogenetic diversity and relative distribution of soxB clones revealed great differences across soils. However, no direct linkage was found between the diversity of S-oxidising bacteria and elemental S oxidation rate.     

Tillage system affects fertilizer-induced nitrous oxide emissions

Since the development of effective N₂O mitigation options is a key challenge for future agricultural practice, we studied the interactive effect of tillage systems on fertilizer-derived N₂O emissions and the abundance of microbial communities involved in N₂O production and reduction. Soil samples from 0–10 cm and 10–20 cm depth of reduced tillage and ploughed plots were incubated with dairy slurry (SL) and manure compost (MC) in comparison with calcium ammonium nitrate (CAN) and an unfertilized control (ZERO) for 42 days. N₂O and CO₂ fluxes, ammonium, nitrate, dissolved organic C, and functional gene abundances (16S rRNA gene, nirK, nirS, nosZ, bacterial and archaeal amoA) were regularly monitored. Averaged across all soil samples, N₂O emissions decreased in the order CAN and SL (CAN?=?748.8?±?206.3, SL?=?489.4?±?107.2 μg kg^?1) followed by MC (284.2?±?67.3 μg kg^?1) and ZERO (29.1?±?5.9 μg kg^?1). Highest cumulative N₂O emissions were found in 10–20 cm of the reduced tilled soil in CAN and SL. N₂O fluxes were assigned to ammonium as source in CAN and SL and correlated positively to bacterial amoA abundances. Additionally, nosZ abundances correlated negatively to N₂O fluxes in the organic fertilizer treatments. Soils showed a gradient in soil organic C, 16S rRNA, nirK, and nosZ with greater amounts in the 0–10 than 10–20 cm layer. Abundances of bacterial and archaeal amoA were higher in reduced tilled soil compared to ploughed soils. The study highlights that tillage system induced biophysicochemical stratification impacts net N₂O emissions within the soil profile according to N and C species added during fertilization.     

Long-term fertilization regimes influence FAME profiles of microbial communities in an arable sandy loam soil in Northern China

Soil samples collected from a long-term (19-year) experimental field with seven treatments were analyzed for fatty acids methyl esters (FAMEs) to determine fertilization regime effects on microbial community structure in sandy loam soils. The amounts of FAMEs in bacteria, actinomycetes, and fungi were highest with the two organic manure (OM)-fertilized treatments (OM and 1/2 OMN – half OM plus half mineral fertilizer), lowest with the NK treatment, and fell in the middle levels with three mineral P-fertilized treatments (NPK, NP and PK) and the control with no fertilizer (CK), with the exception of fungi which showed no significant difference among the five treatments without OM fertilization. Principal component analysis of FAME patterns indicated that NPK was not significantly different from CK, but the two manure-containing treatments and the P-deficiency treatment (NK) were significantly different from CK and NPK. Redundancy analysis plot showed that FAME amounts significantly correlated to soil organic C and total N contents, while soil available P and total P contents, which were greatly decreased by the NK treatment, also had positive and substantial effects on soil microbial FAMEs. The results demonstrated the importance of P fertilization as well as organic manure in maintaining soil microbial biomass and impacting community structure.