Cattle grazing increases microbial biomass and alters soil nematode communities in subtropical pastures

This study focused on examining the impacts of cattle grazing on belowground communities and soil processes in humid grasslands. Multiple components in the soil communities were examined in heavily grazed and ungrazed areas of unimproved and improved bahiagrass (Paspalum notatum Flugge) pastures in south-central Florida. By using small (1-m×1-m) sampling plots, we were able to detect critical differences in nematode communities, microbial biomass, and mineralized C and N, resulting from the patchy grazing pattern of cattle. Soil samples were collected on three occasions between June 2002 and June 2003. Microbial C and N were greater (P?0.01) in grazed than in ungrazed plots on all sampling dates. Effects of grazing varied among nematode genera. Most genera of colonizer bacterivores were decreased (P?0.10) by grazing, but more persistent bacterivores such as Euteratocephalus and Prismatolaimus were increased, as were omnivores and predators. Higher numbers of persisters indicated that grazing resulted in a more structured nematode community. Some herbivores, particularly Criconematidae, were decreased by grazing. Abundance of omnivores, predators, and especially fungivores were strongly associated with C mineralization potential. Strong correlation of microbial C and N with nematode canonical variables composed of five trophic groups illustrates important links between nematode community structure and soil microbial resources. Including the analysis of nematode trophic groups with soil microbial responses reveals detection of grazing impact deeper into the hierarchy of the decomposition process in soil, and illustrates the complexity of responses to grazing in the soil foodweb. Although highly sensitive to grazing impacts, small-scale sampling could not be used to generalize the overall impact of cattle grazing in large-scale pastures, which might be determined by the intensity and grazing patterns of various stocking densities at the whole pasture level.     

Cattle trampling and soil compaction on loamy sands

Abstract. Field investigations on loamy sand soil showed that compaction by cattle trampling increased soil bulk density and cone penetrometer resistance. Trampling produced very dense zones at depths of 7–10.5 cm, which impeded drainage, despite the presence of large macropores. Soil structural and hydrological changes caused by hoof compaction can result in serious pasture management problems. Compaction simulation experiments on saturated turf indicated that most severe structural damage occurs on initial compaction.     

Wetland conversion to beef cattle pasture changes in soil properties

Background and Objective  Largely influenced by the passage of the Swamp Land Act of 1849, many wetlands have been lost in the coastal plain region of southeastern United States primarily as a result of drainage to convert land for agriculture. While further wetland conversion or loss is universally acknowledged, the process continues with little public recognition of the causes or consequences. This study examined changes in soil carbon, pH, and Mehlich extractable nutrients in soils following conversion of wetland to beef cattle pasture. Methods  To better understand the chemical response of soils during wetland conversion to beef cattle pasture, soil samples were collected from the converted beef cattle pastures and from the adjoining reference wetland. Soil samples were collected from eleven sites in the beef cattle pasture, and from four in the adjoining reference wetland. Data that were collected from the reference wetland sites were used as the reference/baseline data to detect potential changes in soil properties associated with the conversion of wetlands to beef cattle pastures from 1940 to 2002. Results and Discussion  Compared with the adjoining reference wetland, the beef cattle pasture soils in 2002, 62 years after being drained, exhibited: (1) a decrease in organic carbon, TOC (-172.3 g kg^-1), nitrogen, TN (-10.1 g kg^-1), water soluble phosphorus, WSP (-5.1mg kg^-1), and potassium, K (-0.7 mg kg^-1); (2) an increase in soil pH (+1.8 pH unit), calcium, Ca (+88.4 mg kg^-1), magnesium, Mg (+7.5 mg kgc), manganese, Mn (+0.3 mg kg^-1), and iron, Fe (+6.9 mg kg^-1); and (3) no significant changes in sodium (Na), zinc (Zn), copper (Cu), and aluminum (Al). In 2002, the amount of TOC and the concentration of soil organic matter (OM) in pasture fields were significantly lower than the concentration in the reference wetland with average values of 7.8 ± 8 g kg^-1 and 36 ± 26 g kg^-1 and 180.1 ± 188 g kg^-1 and 257 ± 168 g kg^-1, respectively. It appeared that conversion of wetlands was proceeding toward a soil condition/composition like that of mineral soils. Conclusion and Outlook  Overall, conversion of wetland had significant effects on soil carbon, pH, nitrogen, phosphorus, and extractable nutrients. Results of our study have shown a decrease in TOC, TN, WSP, and K and an increase in soil pH, Ca, Mg, Mn, and Fe. These results are important in establishing useful baseline information on soil properties in pasture and adjoining reference wetland prior to restoring and converting pasture back to its original wetland conditions as a major part of the restoration effort being underway.     

Effect of LDPE microplastics on chemical properties and microbial communities in soil

The accumulation of plastics in the soil ecosystem poses an increasing environmental concern worldwide. However, little is known about the effect of plastic concentrations on soil properties and soil biota. In this study, we investigated the effect of low-density polyethylene (LDPE) microplastics (MPs) on the chemical and microbial properties of agricultural soil using a set of microcosm experiments. The soil was incubated for 100 days with LDPE at concentrations of 0%, 0.1%, 1%, 3%, 5%, and 7% at 25°C with 70% water-holding capacity. Along with soil chemical analysis, we conducted an analysis of soil microbial properties on the first day and again after 100 days of incubation. LDPE concentrations of ≥1% significantly (p < .05) decreased the pH but increased the electrical conductivity of the soil in comparison with the control (0% LDPE at 100 days). Increasing the LDPE concentration did not affect the soil exchangeable cation content or the available Pb concentration. Firmicutes were the most abundant phyla in the soil on the first day, whereas Proteobacteria, Firmicutes and Actinobacteria became dominant in all treatments after 100 days. An increasing LDPE concentration increased the abundance of Actinobacteria and decreased Proteobacteria. Principal component analysis demonstrated that only 7% LDPE was positively correlated with Actinobacteria, indicating that higher concentrations of LDPE contributed to the growth of this phylum. The findings of this study imply that MP contamination could affect soil chemical properties and microbial activity and that these effects primarily depend on MP concentrations in soil.     

Links between pseudometallophytes and rhizosphere microbial communities in a metalliferous soil

Short-term improvements in soil health derived from pseudometallophytes growth and metal phytoremediation were quantified based upon specific microbial properties of potential value as bioindicators of soil functioning. To this aim, plant consortia, consisting of 1–3 pseudometallophytes with different metal-tolerance strategies (hyperaccumulator: Noccaea caerulescens; accumulator: Rumex acetosa; excluder: Festuca rubra), were grown in a mine soil. At the end of the experiment, soil microbial biomass, activity, structural and functional community profiling, and stability were determined. Growing together with N. caerulescens stimulated the growth of the other two pseudometallophytes. The combination of R. acetosa and N. caerulescens extracted the highest amounts of Zn. Except for β-glucosidase, a negative correlation was found between enzyme activities and number of pseudometallophytes present in the study pots. Microbial biomass C was highest in the presence of all three pseudometallophytes. The combination of different pseudometallophyte species, which may allow for a greater exploitation of potential niche space, appears promising for phytoremediation. When quantifying soil health, the importance of measuring various types of soil microbial properties has been highlighted, as the response observed was different in each of them.     

Effects of biochar on copper immobilization and soil microbial communities in a metal-contaminated soil

Purpose

Copper (Cu) contamination has been increasing in land ecosystems. Biochars (BCs) and arbuscular mycorrhizal fungi (AMF) are known to bind metals, and metallophyte can remove metals from soils. Will BC in combination with AMF contain the Cu uptake by a metallophyte growing in a metal-contaminated soil? The objective of this study was to investigate the effects of BCs on the Cu immobilization and over soil microbial communities in a metal-contaminated soil in the presence of AMF and metallophyte.

Materials and methods

Two BCs were produced from chicken manure (CMB) and oat hull (OHB). A Cu-contaminated sandy soil (338 mg kg^?1) was incubated with CMB and OHB (0, 1, and 5 % w/w) for 2 weeks. Metallophyte Oenothera picensis was grown in pots (500 mL) containing the incubated soils in a controlled greenhouse for 6 months. A number of analyses were conducted after the harvest. These include plant biomass weight, microbial basal respiration, and dehydrogenase activity (DHA), AMF root colonization, spore number, and glomalin production; changes in fungal and bacterial communities, Cu fractions in soil phases, and Cu uptake in plant tissues.

Results and discussion

The BCs increased the soil pH, decreased easily exchangeable fraction of Cu, and increased organic matter and residual fraction of Cu. The BCs provided favorable habitat for microorganisms, thereby increasing basal respiration. The CMB increased DHA by ～62 and ～574 %, respectively, for the low and high doses. Similarly, the OHB increased soil microbial activity by ～68 and ～72 %, respectively, for the low and high doses. AMF root colonization, spore number, and total glomalin-related soil protein (GRSP) production increased by ～3, ～2, and ～3 times, respectively, in soils treated with 1 % OHB. Despite being a metalophyte, O. picensis could not uptake Cu efficiently. Root and shoot Cu concentrations decreased or changed insignificantly in most BC treatments.

Conclusions

The results show that the BCs decreased bioavailable Cu, decreased Cu uptake by O. picensis, improved habitat for microorganisms, and enhanced plant growth in Cu-contaminated soil. This suggests that biochars may be utilized to remediate Cu-contaminated soils.

     

Early changes due to sorghum biofuel cropping systems in soil microbial communities and metabolic functioning

Evaluation of biofuel production cropping systems should address not only energy yields but also the impacts on soil attributes. In this study, forage sorghum (Sorghum bicolor L. Moench) cropping systems were initiated on a low organic matter soil (<0.9 %) with a history of intensively tilled low-input cotton production in the semiarid Southern High Plains of the U.S. Sorghum cropping systems were evaluated in a split-plot design with sorghum cultivar as the main plot and the combination of irrigation level (non-irrigated and deficit irrigated) and aboveground biomass removal rate (50 % and 100 %) as the split plot. The sorghum cultivars used varied in yield potential and lignin content, which are important features for feedstock-producing crops. Within 1 year, the transition from long-term cotton cropping systems to sorghum biofuel cropping systems resulted in increased soil microbial biomass C (16 %) and N (17 %) and shifts in the microbial community composition as indicated by differences in fatty acid methyl ester (FAME) profiles. Additionally, enzyme activities targeting C, N, P and S cycles increased 15–75 % (depending on the enzyme) after two growing seasons. Increased enzyme activities (16–19 %) and differences in FAME profiles were seen due to irrigation regardless of aboveground biomass removal rate. Biomass removal rate and the cultivar type had little effect on the soil microbial properties during the time frame of this study. Early results from this study suggest improvements in soil quality and the sustainability of sorghum biofuel cropping for low organic matter agricultural soils.     

Collembolan preferences for soil and microclimate in forest and pasture communities

The goal of the present study was to determine whether the habitat preference of collembolan species is more influenced by soil properties or by microclimate and whether the preference for a given soil matches the preference for the corresponding microclimate. To answer these questions, we set up a soil core transfer experiment between a forest and an adjacent pasture. We first eliminated the entire soil fauna from forest and pasture soil cores and inoculated them with a new community originated from forest or pasture. After enclosing them, in order to prevent exchanges of soil animals between treated soil and surrounding environment, soil cores were transplanted back to the field for four months and a half. The experimental design comprises every combination of three factors (community origin, soil nature and microclimate) for a total of 8 treatments. Twenty-two species were present in the experiment, 16 of which were present in more than 10% of the experimental soil cores. We determined habitat preference for these 16 species using a large dataset comprised of field observations in the same region. Results showed that most forest species did not withstand pasture microclimate, although some of them preferred pasture soil. Likewise several pasture species were favoured by the forest microclimate, some of them also preferring forest soil. We concluded that forest species were absent (or less abundant) in pastures because they are not resistant enough to drought, while pasture species were absent (or less abundant) in forests because of food requirements, and/or soil physicochemical properties such as soil pH and organic carbon content, and/or were less competitive. Moreover, when selecting their habitat, some species are submitted to a trade-off between preferences for different habitat features.     

Effects of trampling of a wet dairy pasture soil on soil porosity and on mitigation of nitrous oxide emissions by a nitrification inhibitor,dicyandiamide

Urine patches in dairy pastures are major sources of nitrous oxide (N₂O). Wet winters result in compaction damage to pastures because of animal trampling. The nitrification inhibitor, dicyandiamide (DCD), is effective at reducing N₂O emissions from urine patches. Here, we assessed the extent of damage to the physical quality of the soil by trampling and whether this influenced the ability of DCD to mitigate N₂O emissions. A field experiment was conducted where a sandy loam soil was trampled by a mechanical hoof just before urine and DCD application. Trampling reduced air permeability and pore continuity, but this had no effect on bulk density. Urine appeared to have contributed to pore collapse and blockage. Trampling increased average cumulative N₂O emissions from 1.74 to 4.66% of urine‐N applied. This effect was attributed to increased water‐filled pore space, aggregate destruction and suppression of grass growth. DCD was highly effective in reducing N₂O emissions, with the N₂O emission factor of the urine‐N being decreased by 58–63%. Trampling did not significantly affect the effectiveness of DCD in reducing N₂O emissions.     

No-till soil management increases microbial biomass and alters community profiles in soil aggregates

Aggregation is important for soil functioning, providing physical protection of organic matter and microbial inhabitants. Tillage disrupts aggregates, increases wind and water erosion of soils and exposes formerly protected organic matter to decomposition and losses. Microbial biomass and community dynamics in dry-sieved aggregate-size classes from long-term no-till (NT) and conventionally tilled (CT) soils were examined using phospholipid fatty acid analysis (PLFA). Bacterial, fungal, and total biomass were up to 32% greater in NT compared to CT aggregates. Aggregate size also affected microbial biomass, which was highest in the 1–2 mm size class. Arbuscular mycorrhizal fungi (AMF) were particularly affected by tillage disturbance with increases of 40–60% among aggregate-size classes in NT vs. CT, but glomalin related soil protein concentration was not different between tillage treatments or among aggregate-size classes. Bacterial stress biomarkers were higher in CT than NT aggregates but were not significantly correlated with total C, total N or C:N ratio, indicating that the physiological status of bacteria within aggregates was not simply governed by the quantity of available resources. Ordination analysis of PLFA profiles demonstrated a shift in microbial community structure between NT and CT aggregates, correlated with AMF abundance in NT aggregates and increased bacterial stress biomarkers in CT aggregates. Our results demonstrated greater microbial biomass and altered microbial community structure in NT vs. CT aggregates. This work demonstrates that tillage management influences microbial community structure within aggregates and may provide a potential explanation for differences in process rates observed in NT vs. CT soils. Further research into the processes that govern community structure in aggregates from NT and tilled soils is needed to better understand how the interaction of microorganisms with their physical environment affects nutrient turnover and availability.     

Harsh summer conditions caused structural and specific functional changes of microbial communities in an arable soil

The mineralization of the herbicide 3-(4-isopropylphenyl)-1,1-dimethylurea (isoproturon) was reduced after the dry and hot summer 2003 in a soil profile placed in a field lysimeter. A different isoproturon mineralization pattern remained in soil material taken at two different soil depths (0–5 cm and 15–20 cm), although soil material was re-equilibrated at adequate climatic conditions. Special soil microcosms were designed to determine if the changes in this special soil function 'isoproturon mineralization' were related to the climatic scenario of summer 2003. These microcosms were filled with lysimeter soil from the 15–20 cm depth and the temperature and dryness of summer 2003 were simulated. Afterwards, soil samples were taken from the microcosms and re-equilibrated under controlled conditions for 4 weeks. Subsequently, isoproturon mineralization was investigated. The soil microbial community reduced drastically its original capability of isoproturon mineralization in the course of the model experiments.
Analysis of 16S-rRNA by denaturing gel gradient electrophoresis (DGGE) revealed substantial differences in the band patterns of the bacterial communities from both depths of the field lysimeter soil and from the soil incubated in microcosms. The different soil microbial biomass determined by microcalorimetry reinforced these results. In conclusion, the factors higher temperature and smaller soil moisture content generated important and enduring changes in the microbial community structure and therefore in specific soil functions of the community, as shown here by the function of isoproturon degradation. Results are discussed in connection with environmental conditions and conservation tillage.     

Relationships between soil pH and microbial properties in a UK arable soil

Effects of changing pH along a natural continuous gradient of a UK silty-loam soil were investigated. The site was a 200 m soil transect of the Hoosfield acid strip (Rothamsted Research, UK) which has grown continuous barley for more than 100 years. This experiment provides a remarkably uniform soil pH gradient, ranging from about pH 8.3 to 3.7. Soil total and organic C and the ratio: (soil organic C)/(soil total N) decreased due to decreasing plant C inputs as the soil pH declined. As expected, the CaCO₃ concentration was greatest at very high pH values (pH > 7.5). In contrast, extractable Al concentrations increased linearly (R² = 0.94, p < 0.001) from below about pH 5.4, while extractable Mn concentrations were largest at pH 4.4 and decreased at lower pHs. Biomass C and biomass ninhydrin-N were greatest above pH 7. There were statistically significant relationships between soil pH and biomass C (R² = 0.80, p < 0.001), biomass ninhydrin-N (R² = 0.90, p < 0.001), organic C (R² = 0.83, p < 0.001) and total N (R² = 0.83, p < 0.001), confirming the importance of soil organic matter and pH in stimulating microbial biomass growth. Soil CO₂ evolution increased as pH increased (R² = 0.97, p < 0.001). In contrast, the respiratory quotient (qCO₂) had the greatest values at either end of the pH range. This is almost certainly a response to stress caused by the low p. At the highest pH, both abiotic (from CaCO₃) and biotic Co₂ will be involved so the effects of high pH on biomass activity are confounded. Microbial biomass and microbial activity tended to stabilise at pH values between about 5 and 7 because the differences in organic C, total N and Al concentrations within this pH range were small. This work has established clear relationships between microbial biomass and microbial activity over an extremely wide soil pH range and within a single soil type. In contrast, most other studies have used soils of both different pH and soil type to make similar comparisons. In the latter case, the effects of soil pH on microbial properties are confounded with effects of different soil types, vegetation cover and local climatic conditions.     

Functional resilience of soil microbial communities depends on both soil structure and microbial community composition

The effects of soil structure and microbial community composition on microbial resistance and resilience to stress were found to be interrelated in a series of experiments. The initial ability of Pseudomonas fluorescens to decompose added plant residues immediately after a copper or heat stress (resistance) depended significantly on which of 26 sterile soils it was inoculated into. Subsequent studies showed that both the resistance and subsequent recovery in the ability of P. fluorescens to decompose added plant residues over 28 days after stress (resilience) varied significantly between a sandy and a clay-loam soil. Sterile, sandy and clay-loam soil was then inoculated with a complex microbial community extracted from either of the soils. The resulting microbial community structure depended on soil type rather than the source of inoculum, whilst the resistance and resilience of decomposition was similarly governed by the soil and not the inoculum source. Resilience of the clay-loam soil to heat stress did not depend on the water content of the soil at the time of stress, although the physical condition of the soil when decomposition was measured did affect the outcome. We propose that soil functional resilience is governed by the physico-chemical structure of the soil through its effect on microbial community composition and microbial physiology.     

Temporal variation in soil microbial communities in Alpine tundra

Temporal variation in soil microbial communities was studied at a mid-alpine environment in Latnjajaure, northern Sweden, using phospholipid fatty acid (PLFA) analysis. The results show two seasonal shifts in microbial composition. The first shift was associated with snowmelt and mainly related to a decrease in fungal PLFAs, accompanied by an increase in branched 17:0 and methylated PLFAs (biomarkers for Gram-positive- and actinobacteria, respectively), resulting in a decrease in the ratio of fungi-to-bacteria. The second shift occurred across the growing season, and was associated with a switch from shorter to longer PLFAs and an increase in 18:1ω7 (biomarker for Gram-negative bacteria). Vegetation, snow cover dynamics, and N turnover seem to be of minor importance to broad-scale microbial community structure in this area.     

Snow removal alters soil microbial biomass and enzyme activity in a Tibetan alpine forest

Projected future decreases in snow cover associated with global warming in alpine ecosystems could affect soil biochemical cycling. To address the objectives how an altered snow removal could affect soil microbial biomass and enzyme activity related to soil carbon and nitrogen cycling and pools, plastic film coverage and returning of melt snow water were applied to simulate the absence of snow cover in a Tibetan alpine forest of western China. Soil temperature and moisture, nutrient availability, microbial biomass and enzyme activity were measured at different periods (before snow cover, early snow cover, deep snow cover, snow cover melting and early growing season) over the entire 2009/2010 winter. Snow removal increased the daily variation of soil temperature, frequency of freeze–thaw cycle, soil frost depth, and advanced the dates of soil freezing and melting, and the peak release of inorganic N. Snow removal significantly decreased soil gravimetric water, ammonium and inorganic N, and activity of soil invertase and urease, but increased soil nitrate, dissolve organic C (DOC) and N (DON), and soil microbial biomass C (MBC) and N (MBN). Our results suggest that a decreased snow cover associated with global warming may advance the timing of soil freezing and thawing as well as the peak of releases of nutrients, leading to an enhanced nutrient leaching before plant become active. These results demonstrate that an absence of snow cover under global warming scenarios will alter soil microbial activities and hence element biogeochemical cycling in alpine forest ecosystems.     

Relationship between plants and soil microbial communities in fertilized grasslands

The relationship between biodiversity and ecosystem functioning is of major scientific concern today. Few studies though have measured the interactions between soil microorganisms and plant diversity, the purpose of this study was to examine the link between plant diversity and microbial communities in fertilized versus unfertilized grasslands. Experiments were carried out on a permanent grassland in north-eastern France where agricultural practices had remained unchanged for the last 13 years. The experimental design included two plots of 300 m² (fertilized at 120 kg N ha⁻¹ or non-fertilized). Plots were replicated into three equal sub-plots (100 m²). From each sub-plot, six samples of soil and vegetation were taken at three dates during floristic development. At sampling, ground cover of each species was estimated, and total amount of C and N was determined in aboveground and root biomass. Soil samples were analyzed in order to measure the metabolic fingerprints of microorganisms using Biolog^® GN2 microplates. Floristic composition and carbon substrate utilization patterns of rhizobacterial communities were more diversified in unfertilized than fertilized plots. In unfertilized plots, the development of Convolvulus arvensis and two legumes (Trifolium pratense and Trifolium repens) may help maintain observed floristic diversity. Moreover, an inversion of C and N distribution between aboveground and root biomass during the vegetation cycle probably induced a variation of rhizodeposition. This phenomenon could explain the differences of rhizobacterial metabolic fingerprints observed between experimental plots.