长期不同施肥黑土细菌和古菌群落结构及主效影响因子分析

【目的】依据黑龙江省农科院34年的长期定位试验,探讨影响东北黑土细菌和古菌区系的主效环境因子。【方法】试验采集不施肥(CK)、施氮磷肥(NP)、施氮钾肥(NK)、施磷钾肥(PK)、施氮磷钾肥(NPK)5个施肥处理的耕层土样借助传统化学分析方法和Illumina Miseq高通量测序技术解析土壤化学性状和细菌与古菌的群落结构特征,并对细菌和古菌群落结构与环境因子进行相关性分析。【结果】1)不同施肥处理土壤细菌和古菌群落结构存在显著差异与CK相比,4种施肥处理均降低了古菌丰富度,NPK处理增加了土壤细菌的丰富度、多样性以及古菌的多样性;变形菌门(Proteobacteria)、酸杆菌门(Acidobacteria)是所有土样中的优势菌群,占细菌与古菌总量的38.2%~42.9%。施肥条件下,放线菌门(Actinobacteria)、浮霉菌门(Planctomycetes)、绿弯菌门(Chloroflexi)、蓝藻门(Cyanobacteria)的相对丰度降低芽单胞菌门(Gemmatimonadetes)、厚壁菌门(Firmicutes)的相对丰度升高而其他菌门的相对丰度对不同施肥处理的响应不同。2)施用氮肥显著改变了土壤化学性状,长期施氮(尿素)处理的土壤全氮、速效氮和有机质含量显著高于不施氮处理而pH则显著降低。3)RDA分析结果显示,pH对土壤细菌和古菌群落结构的影响最大解释了66.5%的变化;其他环境因子则共解释了细菌与古菌群落33.5%的变化各因子的贡献率依次为pH速效钾有效磷有机质。Pearson相关性分析结果也表明,细菌和古菌群落与土壤化学指标间存在密切的相关关系。【结论】解析了长期不同施肥条件下土壤细菌和古菌的群落结构特征,确定了pH是影响土壤细菌和古菌区系的主效环境因子,氮磷钾均衡施肥不仅显著提高了作物产量和丰富了土壤养分含量,同时也增加了土壤细菌的丰富度、多样性以及古菌的多样性,有利于维持良好的土壤生态环境。研究结果对揭示东北黑土肥力演变机制、建立合理的施肥制度具有重要的理论价值。     

Adaptive responses of soil microbial communities under experimental acid stress in controlled laboratory studies

Soil samples from nine different beech forest sites (A_h horizon) with a mean initial soil pH close to neutral (6.4, SD 0.6) were treated with different amounts of H⁺-ions using acid water of pH 0.5 (H₂SO₄). The H⁺-input needed to lower the pH by one or more than three units was in the range between 0.006 and 0.6 mg H⁺ kg⁻¹, designated as mild, strong or extreme acid stress. The soil samples were incubated for a maximum of 200 days at 20°C and their microbial biomass-C (C_mic), qCO₂ and pH was measured at intervals. In addition, the ratio of fungal:bacterial contributions to total respiration was determined at the beginning and end of the experimental period. The extent of microbial biomass-C loss (32–87%) and the increase in the qCO₂ (1.8–>7 times) in comparison to acid-untreated samples followed the amount of initial H⁺-ion input. Differences between treatments based on one-way ANOVA were significant for C_mic depression at day 8 (p<0.01) and day 80 (p<0.05), and for qCO₂ at the beginning (p<0.001) and at day 80 only between mild and extreme acid stress (p<0.027). Over time some recovery of the microbial biomass was observed with a concomitant decrease in the qCO₂, an indication of adaptation to acidic conditions by the surviving and newly formed biomass. After 80 days of incubation microbial biomass values expressed as percent microbial-C in total soil carbon (C_mic:C_org) resembled those recorded for natural sites at comparable soil pH. There was a strong reduction in bacterial respiration following mild, strong or extreme acid treatment. A recovery here over time was only noted for mild or strong acid treatments. The results confirm that soil pH is a significant controlling parameter for microbial biomass build-up and the fungal:bacterial ratio as found previously with natural site studies.     

长期施肥对黑土农田土壤微生物群落的影响

基于中国科学院海伦农业生态试验站长期定位试验区,应用实时荧光定量PCR(Real-time PCR)和变性梯度凝胶电泳(DGGE)技术研究了无施肥(NF)、单施N、P化肥(NP)以及化肥配施有机猪粪肥(NPM)等3种长期施肥措施对黑土区玉米田土壤微生物群落密度和结构的影响.Real-time PCR方法定量NF、NP及NPM措施土壤细菌群落基因组DNA质量分别为381、1 351和1 773 ng g-1干土,真菌群落基因组DNA质量分别113.3、127.3和20.6 ng g-1干土,真菌与细菌的比率分别为0.31、0.09和0.01,NPM措施显著低于另两种施肥方式(p＜0.05).DGGE方法研究表明,NP和NPM措施不能改善土壤细菌和真菌群落的多样性、均匀性及优势菌优势程度;但主成分分析结果显示NP和NPM措施均可改变土壤细菌和真菌群落的构成,且真菌群落的变化更为显著;聚类分析结果显示NP和NPM措施下细菌群落结构较相近,其相似系数为0.89,真菌群落中NP措施与NF措施相近,相似系数为0.63,高于NP与NPM措施的相似系数0.51.上述结果表明有机猪粪肥的长期施用可以显著降低黑土农田土壤真菌与细菌的比率,且明显地改变土壤细菌和真菌群落的结构.     

Increased rice yield in long-term crop rotation regimes through improved soil structure,rhizosphere microbial communities,and nutrient bioavailability in paddy soil

Soil in short-term crop rotation systems (STCR) is still in the initial development stage of farmland soil, whereas after long-term crop rotation treatment (LTCR), soil properties are significantly different. This study compares STCR (4 years) and LTCR (30 years) rice-rice-fallow, rice-rice-rape rotation practices under the same soil type background and management system. To reveal ecosystem mechanisms within soils and their effects on rice yield following LTCR, we analyzed the physical, chemical, and microbiological properties of soils with different rotations and rotation times. Relative to STCR, LTCR significantly reduced soil water-stable aggregate (WSA) content in the <?0.053-mm range, while >?2 mm WSA content significantly increased. Soil organic matter increased in fields under LTCR, mainly in >?2 mm, 2–0.25 mm, and <?0.053 mm soil WSA in 0–10 cm soil layer. LTCR was associated with significantly increased total soil organic matter, at the same time being associated with increasing the amount of active organic matter in the 0–20 cm soil layer. The two crop rotation regimes significantly differed in soil aggregate composition as well as in soil N and P, microbial biomass, and community composition. Relative to STCR, LTCR field soils had significantly higher soil organic matter, active organic matter content, soil enzyme activities, and overall microbial biomass, while soil WSA and microbial community composition was significantly different. Our results demonstrate that LTCR could significantly improve soil quality and rice yield and suggest that length of rotation time and rice-rice-rape rotation are critical factors for the development of green agriculture.     

长期不同施肥条件下土壤微生物量及 土壤酶活性的季节变化特征

研究长期不同施肥条件下褐潮土微生物量碳（SMBC）、微生物量氮（SMBN）和土壤酶活性随季节的变化特征。结果表明,长期施肥条件下土壤SMBC、SMBN含量及土壤酶活性均表现出一定的季节变化。SMBC、SMBN含量在各施肥处理中的顺序为:化肥与猪厩肥配施处理（NPKM）化肥配施玉米秸秆处理（NPKS）单施化肥处理（NPK）不施肥处理（CK）,各处理之间差异显著(P0.05);施肥还显著提高了土壤脲酶、转化酶、碱性磷酸酶活性,有机无机配施的高于单施化肥的。除过氧化氢酶活性随季节变化显著下降外,SMBC、SMBN、酶活性的值一般在夏季（6月到8月）较高。通过双因素单变量方差分析表明,不同施肥制度与季节变化对SMBC、SMBN与酶活性的影响分别达极显著水平（P0.01）,不同施肥制度的SMBC、SMBN与酶活性的季节波动有极显著不同（P0.01）。     

Differential responses of total and active soil microbial communities to long-term experimental N deposition

The relationship between total and metabolically active soil microbial communities can provide insight into how these communities are impacted by environmental change, which may impact the flow of energy and cycling of nutrients in the future. For example, the anthropogenic release of biologically available N has dramatically increased over the last 150 years, which can alter the processes controlling C storage in terrestrial ecosystems. In a northern hardwood forest ecosystem located in Michigan, USA, nearly 20 years of experimentally increased atmospheric N deposition has reduced forest floor decay and increased soil C storage. A microbial mechanism underlies this response, as compositional changes in the soil microbial community have been concomitantly documented with these biogeochemical changes. Here, we co-extracted DNA and RNA from decaying leaf litter to determine if experimental atmospheric N deposition has lowered the diversity and altered the composition of the whole communities of bacteria and fungi (i.e., DNA-based) and well as its active members (i.e., RNA-based). In our experiment, experimental N deposition did not affect the composition, diversity, or richness of the total forest floor fungal community, but did lower the diversity (−8%), as well as altered the composition of the active fungal community. In contrast, neither the total nor active forest floor bacterial community was significantly affected by experimental N deposition. Our results suggest that future rates of atmospheric N deposition can fundamentally alter the organization of the saprotrophic soil fungal community, key mediators of C cycling in terrestrial environments.     

Strong functional stability of soil microbial communities under semiarid Mediterranean conditions and subjected to long-term shifts in baseline precipitation

We investigated the effect of soil microclimate on the structure and functioning of soil microbial communities in a Mediterranean Holm-oak forest subjected to 10 years of partial rain exclusion manipulations, simulating average drought conditions expected in Mediterranean areas for the following decades. We applied a high throughput DNA pyrosequencing technique coupled to parallel measurements of microbial respiration (R_H) and temperature sensitivity of microbial respiration (Q₁₀). Some consistent changes in the structure of bacterial communities suggest a slow process of community shifts parallel to the trend towards oligotrophy in response to long-term droughts. However, the structure of bacterial communities was mainly determined by short-term environmental fluctuations associated with sampling date (winter, spring and summer) rather than long-term (10 years) shifts in baseline precipitation. Moreover, long-term drought did not exert any chronic effect on the functioning of soil microbial communities (R_H and Q₁₀), emphasizing the functional stability of these communities to this long-term but mild shifts in water availability. We hypothesize that the particular conditions of the Mediterranean climate with strong seasonal shifts in both temperature and soil water availability but also characterized by very extreme environmental conditions during summer, was acting as a strong force in community assembling, selecting phenotypes adapted to the semiarid conditions characterizing Mediterranean ecosystems. Relations of climate with the phylogenetic structure and overall diversity of the communities as well as the distribution of the individual responses of different lineages (genera) to climate confirmed our hypotheses, evidencing communities dominated by thermotolerant and drought-tolerant phenotypes.     

Response of soil microbial communities to compost amendments

Soil organic matter is considered as a major component of soil quality because it contributes directly or indirectly to many physical, chemical and biological properties. Thus, soil amendment with composts is an agricultural practice commonly used to improve soil quality and also to manage organic wastes. We evaluated in laboratory scale experiments the response of the soilborne microflora to the newly created soil environments resulting from the addition of three different composts in two different agricultural soils under controlled conditions. At a global level, total microbial densities were determined by classical plate count methods and global microbial activities were assessed by measuring basal respiration and substrate induced respiration (SIR). Soil suppressiveness to Rhizoctonia solani diseases was measured through bioassays performed in greenhouses. At a community level, the modifications of the metabolic and molecular structures of bacterial and fungal communities were assessed. Bacterial community level physiological profiles (CLPP) were determined using Biolog™ GN microtiter plates. Bacterial and fungal community structures were investigated using terminal restriction fragment length polymorphism (T-RFLP) fingerprinting. Data sets were analyzed using analysis of variance and ordination methods of multivariate data. The impact of organic amendments on soil characteristics differed with the nature of the composts and the soil types. French and English spent mushroom composts altered all the biological parameters evaluated in the clayey soil and/or in the sandy silty clay soil, while green waste compost did not modify either bacterial and fungal densities, SIR values nor soil suppressiveness in any of the soils. The changes in bacterial T-RFLP fingerprints caused by compost amendments were not related to the changes in CLPP, suggesting the functional redundancy of soil microorganisms. Assessing the density, the activity and the structure of the soil microflora allowed us not only to detect the impact of compost amendment on soil microorganisms, but also to evaluate its effect at a functional level through the variation of soil disease suppressiveness. Differences in disease suppressiveness were related to differences in chemical composition, in availability of nutrients at short term and in microbial composition due to both incorporation and stimulation of microorganisms by the compost amendments.     

Soil aggregate size mediates the impacts of cropping regimes on soil carbon and microbial communities

Understanding the influence of long-term crop management practices on the soil microbial community is critical for linking soil microbial flora with ecosystem processes such as those involved in soil carbon cycling. In this study, pyrosequencing and a functional gene array (GeoChip 4.0) were used to investigate the shifts in microbial composition and functional gene structure in a medium clay soil subjected to various cropping regimes. Pyrosequencing analysis showed that the community structure (β-diversity) for bacteria and fungi was significantly impacted among different cropping treatments. Functional gene array-based analysis revealed that crop rotation practices changed the structure and abundance of genes involved in C degradation. Significant correlations were observed between the activities of four enzymes involved in soil C degradation and the abundance of genes responsible for the production of respective enzymes, suggesting that a shift in the microbial community may influence soil C dynamics. We further integrated physical, chemical, and molecular techniques (qPCR) to assess relationships between soil C, microbial derived enzymes and soil bacterial community structure at the soil micro-environmental scale (e.g. within different aggregate-size fractions). We observed a dominance of different bacterial phyla within soil microenvironments which was correlated with the amount of C in the soil aggregates suggesting that each aggregate represents a different ecological niche for microbial colonization. Significant effects of aggregate size were found for the activity of enzymes involved in C degradation suggesting that aggregate size distribution influenced C availability. The influence of cropping regimes on microbial and soil C responses declined with decreasing size of soil aggregates and especially with silt and clay micro-aggregates. Our results suggest that long term crop management practices influence the structural and functional potential of soil microbial communities and the impact of crop rotations on soil C turnover varies between different sized soil aggregates. These findings provide a strong framework to determine the impact of management practices on soil C and soil health.     

The effect of electrokinetics on soil microbial communities

There is growing interest in the potential of applying an electric field to soil to move and stimulate the degradation of contaminants, but we know little of the impact of this approach on exposed microbial communities. The effect of electrokinetics (3.14 A m⁻²) on soil bacterial and fungal communities was studied using soil cartridge microcosms (13 cm×5.4 cm×5.9 cm). After 27 days of electrokinetics, a zone of low pH (<4) was detected close to the anode. Soil exposed to electrokinetics and immediately adjacent to the anode demonstrated an increase in carbon substrate utilisation potential (≤290%) and microbial respiration rates. The diversity and structure of the bacterial community showed little response to electrokinetics, with the exception of soil close to the anode. Here, an increase in the percentage of Gram-positive species isolated was identified, most notably of Bacillus megaterium. Overall, the only detectable response of the microbial community was observed in soil immediately adjacent to the anode. The results of this study provide evidence that the application of electrokinetics has no serious negative effect on ‘soil microbial health’, thus endorsing its validity as a viable soil remediation technology.     

Functional and molecular responses of soil microbial communities under differing soil management practices

The effects of soil management on some microbiological properties and soil bacterial community structure were evaluated. Two field sites with the same soil type, located on the same geographic area adjacent to one other, have received different soil management practices and cultivation. One site has been subjected for 20 years to intensive horticulture under conventional tillage and irrigation with low quality salt-rich water; the second field site has been uncultivated for a long period and was turned to organic farming practices over the last 5 years and is currently cultivated with fruit orchard. Total bacterial counts, microbial ATP, microbial community metabolic (BIOLOG^®) profiles, and DNA fingerprinting by PCR-DGGE were determined. Two-way ANOVA revealed that total bacterial counts were not significantly (P>0.3) affected by the two different management practices; ATP content was consistently and significantly (P<0.001) lower in salt-water irrigated soil than in organic soil at the three sampling times. The cluster analysis of community level physiological profiles indicated that microbial communities were much more uniform in organic soil than in irrigated one, suggesting that salt-water irrigation could have affected the size of the microbial population, its metabolic activities, as well as its composition. Molecular patterns fitted the BIOLOG^® profile diversity. In particular, at any sampling time, PCR-DGGE patterns of bacterial DNA, extracted by an indirect method, significantly discriminated irrigated from organic soil samples. The PCR-DGGE patterns of total soil DNA, extracted by a direct method, showed a moderate to significant variation among irrigated and organic soil samples. Biochemical, microbiological and molecular data contributed to evidence a significantly different response of indigenous microflora to soil management by using saline water or organic farming.     

Glyphosate toxicity and the effects of long-term vegetation control on soil microbial communities

We assessed the direct and indirect effect of the herbicide glyphosate on soil microbial communities from ponderosa pine (Pinus ponderosa) plantations of varying site quality. Direct, toxic effects were tested using culture media and soil bioassays at glyphosate concentrations up to 100-fold greater than expected following a single field application. Indirect effects on microbial biomass, respiration, and metabolic diversity (Biolog and catabolic response profile) were compared seasonally after 9–13 years of vegetation control using repeated glyphosate applications in a replicated field study. Three pine plantations were selected to provide a range of soil characteristics associated with glyphosate binding (clay, Fe and Al oxide content) and site growing potential from the lowest to the highest in northern California. Glyphosate was toxic to bacteria and fungi from each plantation when grown in soil-free media. Culturable populations were reduced, as was the growth rate and metabolic diversity of surviving bacteria, by increasing concentrations of glyphosate. This toxicity was not expressed when glyphosate was added directly to soil, however. Microbial respiration was unchanged at expected field concentrations (5–50 μg g⁻¹), regardless of soil, and was stimulated by concentrations up to 100-fold greater. Increased microbial activity resulted from utilization of glyphosate as an available carbon substrate. Estimated N and P inputs from glyphosate were inconsequential to microbial activity. Long-term, repeated applications of glyphosate had minimal affect on seasonal microbial characteristics despite substantial changes in vegetation composition and growth. Instead, variation in microbial characteristics was a function of time of year and site quality. Community size, activity, and metabolic diversity generally were greatest in the spring and increased as site quality improved, regardless of herbicide treatment. Our findings suggest that artificial media assays are of limited relevance in predicting glyphosate toxicity to soil organisms and that field rate applications of glyphosate should have little or no affect on soil microbial communities in ponderosa pine plantations.     

长期不同施肥条件下红壤性水稻土微生物群落结构的变化

以位于江西省红壤研究所内长期定位试验的水稻土(始于1981年)为研究对象,运用磷脂脂肪酸(phospholipid fatty acid,PLFA)和BIOLOG分析技术研究了不施肥(CK)、单施化肥(NPK)及有机肥与化肥混施(NPKM)三种施肥方式对土壤微生物群落结构的影响。结果表明:长期施化肥和有机肥与化肥混施处理的PLFA总量均高于未施肥处理,两者分别较未施肥处理高91%和309%;PLFA主成分分析(PCA)显示施肥促进了土壤微生物群落结构的变化,其中NPKM处理增加了革兰氏阴性细菌(G-细菌)、真菌、放线菌和原生动物的数量,NPK处理增加了革兰氏阳性细菌(G+细菌)的数量,不施肥处理较施肥处理提高了真菌/细菌比例,CK和NPK处理的微生物群落结构更为相似;各施肥处理间土壤的AWCD值(平均每孔颜色变化率,average well color development,AWCD)表明,NPKM处理能够促进土壤微生物群落对碳源的利用能力,进而增加土壤中微生物的整体活性,而NPK处理减弱了土壤微生物的活性。代谢功能多样性分析同时表明,NPKM处理增加了微生物群落的多样性,而NPK处理使土壤微生物的多样性降低;土壤PLFA与土壤养分的相关性分析显示,土壤总PLFA量与土壤有机质和全氮呈极显著相关(p0.01),与速效养分相关性不大。     

旱地长期培肥土壤脲酶和碱性磷酸酶动力学及热力学特征研究

研究了连续25年长期培肥试验条件下土壤脲酶和碱性磷酸酶酶促反应的动力学和热力学特征,从酶学角度揭示长期培肥的效应。结果表明,长期培肥增加了脲酶和碱性磷酸酶酶促反应的Vmax、Vmax/Km和k值;降低了Ea、△G、△H和△S值,说明培肥能提高酶促反应速度、减小活化自由能、加快土壤中物质的生物循环过程。酶促反应动力学参数和热力学参数与土壤性质相关分析表明,酶促反应动力学参数大多依赖于土壤化学性状,基于动力学参数的土壤肥力指标体系可评价土壤肥力水平,且U-Vmax、P-Km、P-Vmax可作为土壤肥力的重要指标。     

Contributions from different microbial processes to N2O emission from soil under different moisture regimes

Nitrous oxide emissions from a sandy-loam textured soil wetted to matric potentials of either-1.0 or-0.1 kPa were determined in laboratory experiments in which the soil was incubated in air (control), air plus 10 Pa C₂H₂ (to inhibit nitrification), 100 kPa O₂ (to suppress denitrification), 10 kPa C₂H₂ (to inhibit N₂O reduction to N₂ in denitrification) or following autoclaving. The total N₂O production, consumption and net N₂O emission from the soils together with the contributions to N₂O emission from different processes of N₂O production were estimated. The rate of N₂O production was significantly greater in the wetter soil (282 pmol N₂O g^-1 soil h^-1) than in the drier soil (192 pmol N₂O g^-1 soil h^-1), but because N₂O consumption by denitrifiers was also greater in the wetter soil, the net N₂O emissions from the wetter and the drier soils did not differ significantly. Non-biological sources made no significant contribution to N₂O emission under either moisture regime and biological processes other than denitrification and nitrification made only a small contribution (1% of the total N₂O production) in the wetter soil. Denitrifying nitrifiers were the predominant source of N₂O emitted from the drier soil and other (non-nitrifying) denitrifiers were the predominant source of N₂O emitted from the wetter soil.     

长期定位施肥下黑土呼吸的变化特征及其影响因素

阐明长期不同施肥下的土壤呼吸特征及其影响机制对黑土区固碳减排研究至关重要。该研究基于1990年开始的国家土壤肥力与肥料效益监测网站-吉林省公主岭市黑土监测基地,选取不施肥(CK)、单施氮磷钾肥(NPK)、无机肥配施低量有机肥(NPKM1)、1.5倍的无机肥配施低量有机肥(1.5(NPKM1))、无机肥配施高量有机肥(NPKM2)和无机肥配施秸秆(NPKS)6个处理,明确了长期不同施肥下土壤总呼吸和异养呼吸的季节变化特征,并分析了土壤温度、水分、微生物量碳氮、铵态氮、硝态氮与土壤呼吸和异养呼吸的关系。结果表明:长期有机无机肥配施可以显著提高土壤有机碳、全氮、土壤速效磷、有效钾的含量和土壤活性有机碳库组分含量(P0.05);与不施肥相比,长期有机无机肥配施和无机配施秸秆处理分别显著增加土壤呼吸及异养呼吸碳累积排放量56.32%~86.54%和70.01%~100.93%;根系呼吸对土壤呼吸的整体贡献为23.68%~34.30%;相关分析表明,土壤呼吸速率和异养呼吸速率与土壤温度极显著正相关(P0.01),与土壤含水率呈显著负相关(P0.01),土壤温度可以分别解释土壤呼吸和异养呼吸变化的42.79%和39.61%;土壤微生物量碳氮、土壤硝态氮均与土壤呼吸速率和异养呼吸速率极显著相关(P0.01),土壤微生物量碳氮、土壤硝态氮可以分别解释土壤呼吸和异养呼吸变化的78.42%和77.18%,58.33%和56.79%,59.29%和59.14%;土壤铵态氮虽然显著影响土壤呼吸速率(P0.05),可以解释土壤呼吸变化的5.56%,但其对异养呼吸速率的影响不显著。综合来看,微生物量碳对土壤呼吸及异养呼吸的影响最大,而土壤含水率(15%)越高则土壤呼吸越弱;无机配施秸秆处理可以提高土壤碳库组分含量,且作物生育期内土壤呼吸及异养呼吸碳累积释放量均低于等氮量下施用有机肥(NPKM1)的处理,为最佳的农田管理措施。     

Environmental conditions rather than microbial inoculum composition determine the bacterial composition,microbial biomass and enzymatic activity of reconstructed soil microbial communities

The composition of microbial communities and the level of enzymatic activity in the soil are both important indicators of soil quality, but the mechanisms by which a soil bacterial community is generated and maintained are not yet fully understood. Two soil samples were collected from the same location, but each had been subjected to a different long-term fertilization treatment and was characterized by different microbial diversity, biomass and physicochemical properties. These samples were γ-sterilized and swap inoculated. Non-sterilized soil samples along with sterilized and inoculated soil samples were incubated for eight months before their nutrient content, microbial biomass, enzymatic activity and bacterial composition were analyzed. Total phosphorus, and potassium concentrations along with the overall organic matter content of the non-sterilized soil were all equal to those of the same soil that had been sterilized and self/swap inoculated. Additionally, the microbial biomass carbon concentration was not affected by the specific inoculum and varied only by soil type. The activities of catalase, invertase, urease, protease, acid phosphatase and phytase were smaller in the sterilized soils that had been inoculated with organisms from chemical fertilizer amended soil (NPK) when compared to sterilized soil inoculated with organisms from manure and chemical fertilizer amended soil (NPKM) and non-sterilized soil samples. Bacterial 16S rRNA examined by 454-pyrosequencing revealed that the composition of bacterial community reconstructed by immigrant microbial inoculum in the soil was mainly influenced by its physicochemical properties, although the microbial inoculum contained different abundances of bacterial taxa. For example, the pH of the soil was the dominant factor in reconstructing a new bacterial community. Taken together, these results demonstrated that both soil microbial composition and functionality were primarily determined by soil properties rather than the microbial inoculum, which contributed to our understanding of how soil microbial communities are generated and maintained.     

The effect of earthworms and liming on soil microbial communities

The effect of liming and earthworms on the composition and function of soil microbial communities was investigated in an upland soil from the UK in order to understand interactions between the biotic and abiotic components of soil systems. A factorial experiment was established using soils from the Sourhope Farm, near Kelso, with lime or no lime added, with or without earthworms added and a combined treatment of both lime and earthworm additions. The soils were incubated and destructively sampled after 180 days. Measurements of soil microbial biomass, dehydrogenase activity, phenotypic structure (by phospholipid fatty acid analysis (PLFA) and responses to four carbon substrates (d-glucose, l-arginine, α-ketoglutaric acid, α-cyclodextrin) were determined. Statistically significant results were limited to the litter layers, with no significant observations in either the H or Ah horizons. There were significant decreases in the soil microbial biomass and microbial activity in the litter layers caused by the addition of earthworms; liming reduced microbial biomass only. The addition of earthworms caused a significant difference in the PLFA principle component analysis (PCA) profile, as did liming. For the PLFA PCA profile, earthworm plus lime treatment was indistinguishable from the liming result. Addition of earthworms significantly suppressed the response to glucose; this effect was removed by liming. This indicates that liming may significantly alter the ecological interactions between earthworms and the microbial community.     

Long-term fertilization regimes influence FAME profiles of microbial communities in an arable sandy loam soil in Northern China

Soil samples collected from a long-term (19-year) experimental field with seven treatments were analyzed for fatty acids methyl esters (FAMEs) to determine fertilization regime effects on microbial community structure in sandy loam soils. The amounts of FAMEs in bacteria, actinomycetes, and fungi were highest with the two organic manure (OM)-fertilized treatments (OM and 1/2 OMN – half OM plus half mineral fertilizer), lowest with the NK treatment, and fell in the middle levels with three mineral P-fertilized treatments (NPK, NP and PK) and the control with no fertilizer (CK), with the exception of fungi which showed no significant difference among the five treatments without OM fertilization. Principal component analysis of FAME patterns indicated that NPK was not significantly different from CK, but the two manure-containing treatments and the P-deficiency treatment (NK) were significantly different from CK and NPK. Redundancy analysis plot showed that FAME amounts significantly correlated to soil organic C and total N contents, while soil available P and total P contents, which were greatly decreased by the NK treatment, also had positive and substantial effects on soil microbial FAMEs. The results demonstrated the importance of P fertilization as well as organic manure in maintaining soil microbial biomass and impacting community structure.