Amino acid and peptide dynamics in horticultural soils under conventional and organic management strategies

Purpose  

Free amino acids (FAAs) and peptides, and dissolved organic nitrogen (DON) comprise key pools in terrestrial soil carbon (C) and nitrogen (N) cycles. A comparative study of organic and conventional arable farming systems was conducted in Shanghai, China to determine the influence of management practices on characterization of AA and peptide dynamics.     

Soil disturbance and elemental dynamics in a Northern Hardwood forest soil,USA

Loss of soil nutrients due to disturbance may serve as an index of the homeostasis of biogeochemical cycling and ecosystem stability. Soil and the surrounding root system were disturbed during the installation of Soil Containment Systems (SCSs) in the hill slope at the Bear Brook Watershed in Maine (BBWM). The SCSs were constructed from high density PVC pipe (24 cm i.d. and 30 cm height) implanted at field. Leachate cations and anions, soil organic matter and exchangeable cations were analyzed. Leachate NO₃ ^? was higher by an order of magnitude compared to undisturbed soils from the same research site and other hardwood forest soils in the northeast U.S. The concentrations of cations in the leachate from SCSs were also higher and loss of NO₃ ^? was positively correlated with the loss of most cations. Calcium was the dominant cation representing 55% of the base cation composition of soil leachate. Monthly losses of Ca²⁺, Mg²⁺ and K⁺ were 1.8, 1.6 and 1.2% of total exchangeable pools, respectively. Disturbance of the BBWM soil ecosystem caused high rates of NO₃ ^? leaching which markedly changed the soil biogeochemistry. These results and other supporting data from watershed mass balances and experimental chemical additions suggest that BBWM may be N saturated.     

Importance of organic and inorganic sulfur to mineralization processes in a forest soil

Sulfur mineralization rates, changes in organic and inorganic S constituents and arylsulfatase activity were determined in four soil horizons (O2, B21h, B22hir and B23) which represent the major portion of a forest Spodosol (Becket). Biweekly, for 20 weeks, soil subsamples were leached with deionized water and analyzed for S constituents. Rates of water-soluble sulfate release were 123, 39, 34 and 18 nmol S g^?1 dry mass week^?1 for O2, B22hir, B23 and B21h horizons, respectively. Only in the organic O2 horizon did non-sulfate inorganic S (Zn-HCl-S) increase (15 nmol S g^?1) while phosphate extractable S decreased in all the mineral horizons (13, 19 and 28 nmol S g^?1 week^?1, B21h, B22hir and B23, respectively) due to desorption. Ester sulfate was mineralized in the B22hir and B23 horizons (?66 and ?22 nmol S g^?1 week^?1) and increased in the O2 (174 nmol S g^?1 week^?1). Arylsulfatase activity varied among horizons and decreased with time. Carbon-bonded S decreased in all horizons, especially those with high respiration rates (i.e. O2 and B21h), but changes were not significant. Only the B22hir horizon exhibited a significant loss of total S (128 nmol S g^?1 week^?1). The interrelationships among inorganic and organic S dynamics were outlined.     

Using soil temperature and moisture to predict forest soil nitrogen mineralization

Due to the importance of N in forest productivity ecosystem and nutrient cycling research often includes measurement of soil N transformation rates as indices of potential availability and ecosystem losses of N. We examined the feasibility of using soil temperature and moisture content to predict soil N mineralization rates (Nmin) at the Coweeta Hydrologic Laboratory in the southern Appalachians. We conducted seasonal laboratory incubations of A and AB horizon soils from three sites with mixed-oak vegetation using temperature and moisture levels characteristic of the season in which the soils were collected. The incubations showed that temperature and temperature-moisture interactions significantly affected net soil Nmin. We used the laboratory data to generate equations relating net Nmin to soil temperature and moisture data. Using field-collected temperature and moisture data we then calculated Nmin on similar forest sites and compared predicted rates with in situ, closed-core Nmin measurements. The comparison showed that the in situ Nmin was greater than rates predicted from laboratory generated equations (slope =3.22; r²=0.89). Our study suggests that while climatic factors have a significant effect on soil Nmin, other factors also influence rates measured in the laboratory and in situ.     

Effect of the quantity and duration of application of simulated acid precipitation on nitrogen mineralization and nitrification in a forest soil

A study was conducted of the influence of the rate of application of simulated acid rain on N mineralization and nitrification in a forest soil. The rates were varied by applying different quantities of simulated rain for varying periods of time. The soil was exposed in the laboratory to simulated rain at pH 3.5, 4.1, or 5.6 at rates equivalent to 1.5, 2.3, 4.6, 7.1 or 15 times the average rate of precipitation in the field, and then mineralization of soil N or oxidation of added ammonium was determined. The rates of N mineralization were inhibited by precipitation at pH 3.5 or 4.1 when applied for 27 to 234 day at rates 1.5 times greater than that which occurs in nature. Nitrogen mineralization was not affected by simulated rain at pH 3.5 or 4.1 in soils exposed for 156 day at 2.3 times the natural rate of precipitation, for 27 or 81 day at 4.6 times the natural rate, for 54 day at 7.1 times the natural rate, or for 234 day at 15 times the natural rate. On the other hand, mineralization was fastest in soil exposed to pH 3.5 rain for 234 day at 4.6 times the natural rate of precipitation and for 81 day at 15 times the natural rate. Nitrate formation in soil amended with ammonium was inhibited by rain of pH 3.5 regardless of the intensity of rain or the duration of exposure. For a constant rate of rain application, the inhibition of nitrate formation in ammonium-amended soil generally increased with longer periods exposure. The data show that the use of different rates of additions of artificial rain or different periods of exposure to the simulated precipitation will lead to different conclusions on the influence of acid rain on N mineralization in soil.     

温度变化对森林土壤氮矿化的影响

Nitrogen mineralization in forest soil wa studied in laboratory by incubating undisturbed soil cores enclosed within PVC columns at different temperatures to compare the effect of flucttuating temperature with that of constant temperaature,and to find out whether soil nitrification shows linearity over time .The results showed that there was no significant difference between soil nitrification at fluctuating temperature and that at constant temperature,and suggested that it must be careful to make the conclusion that soil nitrification has linearity over time.     

Net nitrogen mineralization and nitrification rates in forest soil in northeastern Taiwan

We used a laboratory incubation approach to measure rates of net N mineralization and nitrification in forest soils from Fu-shan Experimental Forest WS1 in northern Taiwan. Net mineralization rates in the O horizon ranged from 4.0 to 13.8 mg N kg⁻¹ day⁻¹, and net nitrification rates ranged from 2.2 to 11.6 mg N kg⁻¹ day⁻¹. For mineral (10–20 cm depth) soil, net mineralization ranged from 0.06 to 2.8 mg N kg⁻¹ day⁻¹ and net nitrification rates ranged from 0.02 to 2.8 mg N kg⁻¹ day⁻¹. We did not find any consistent differences in N mineralization or nitrification rates in soils from the upper and lower part of the watershed. We compared the rates of these processes in three soil horizons (to a soil depth of 30 cm) on a single sampling date and found a large decrease in both net N mineralization and nitrification with depth. We estimated that the soil total N pool was 6,909 kg N ha⁻¹. The present study demonstrates the importance of the stock of mineral soil N in WS1, mostly organic N, which can be transformed to inorganic N and potentially exported to surface and ground water from this watershed. Additional studies quantifying the rates of soil N cycling, particularly multi-site comparisons within Taiwan and the East Asia–Pacific region, will greatly improve our understanding of regional patterns in nitrogen cycling.     

Labile carbon effects on nematodes, enchytraeids, and N mineralization in Norway spruce forest soil

The effect of sucrose (4 g kg⁻¹) on the population dynamics of nematodes and enchytraeids and on N mineralization was studied in laboratory microcosms containing 30 g of Norway spruce forest humus. Sucrose did not have a positive influence on nematode and enchytraeid dynamics but neither ammonium nor nitrate concentration was affected. The results indicate that faunal activity can counteract microbial N immobilization at C limited conditions.     

Organic matter dynamics in a temperate forest soil following enhanced drying

Climate models predict an increase in global surface temperature and a change in precipitation intensity during this century. For Europe, extended drought periods followed by heavy rainfall are expected. The consequences for soil organic matter (SOM) dynamics are poorly understood. In this study, we investigated the effect of changing soil moisture regime on SOM quality under field conditions. For this purpose, a throughfall exclusion (TE) experiment was conducted in the summers 2006 and 2007 on a Haplic Podzol under a 140 years old Norway spruce stand using a roof installation followed by re-wetting compared to non-manipulated control plots. Total organic carbon, lignin (stable carbon pool), plant and microbial sugars (labile carbon pool) and microbial biomass (phospholipid fatty acids) were determined before, during and after the experiment in the L, O, A and B horizons. No significant treatment effects could be observed for SOM quantity. Amounts of lignin and soil microbial biomass were also not affected by the moisture regime but structure of soil microbial community. In the L and organic layers, gram + bacteria and actinomycetes were reduced during water stress, while gram- bacteria, fungi and protozoa increased during drought. Warmer and drier weather led to a dominance of fungi while a cooler and moister regime favoured bacteria, at least in the L horizon. An increasing PLFA (cy17:0 + cy19:0)/(16:1ω7c + 18:1ω7c) ratio in the O layer and A horizon suggests that the microbes suffered from water stress in these horizons. This agrees with a decreasing contribution of microbial sugars to SOM with decreasing water content in the O and A horizons. Although the original plant material exhibited increasing plant sugar content with increasing dryness, the contribution of the plant sugars to total soil organic carbon (SOC) generally decreased with decreasing water content. Physical-chemical changes of soil structure can theoretically change the sugar extractability from soils and/or chemical changes of sugars structure can probably affect the analysis. Therefore, chemical alteration and stabilization could be responsible for sugar decrease in soil with increasing dryness explaining the contrast compared to the original plant material.     

Net nitrogen mineralization from light- and heavy-fraction forest soil organic matter

Fine surface soil ( < 2 mm) from four sites in Oregon and Washington and three in Costa Rica was separated by repeated notation in NaI solution (sp. gr. < 1.2, 1.4, or 1.6 g cm^?3) into a light and a heavy fraction. Most organic matter in the light fractions consisted of partly-decomposed root fragments and other plant and microbial remnants and most in the heavy fractions was adsorbed or deposited on mineral surfaces or was protected within organo-mineral microaggregates. The light fraction had a consistently wider C:N ratio than the heavy, and net N mineralization during anaerobic incubation was greater from the heavy than from the light fraction in five of six soils for which both fractions were incubated. Net N mineralization was greater from the heavy fraction than from the whole soil of most sites perhaps because the light fraction immobilized N released from the heavy fraction when they were incubated together. Correlation between net N mineralization (as a proportion of total N) and C:N ratio was negative for the light fraction (r²=0.74) but positive for the heavy fraction (r² = 0.85), suggesting that the C:N ratio does not control the extent to which heavy-fraction N is mineralizable.     

Denitrification and C,N mineralization as function of temperature and moisture potential in organic and mineral horizons of an acid spruce forest soil

The influence of temperature (T) and water potential (ψ) on the denitrification potential, C and N mineralization and nitrification were studied in organic and mineral horizons of an acid spruce forest soil. The amount of N₂O emitted from organic soil was 10 times larger than from the mineral one. The maximum of N₂O emission was in both soils at the highest water potential 0 MPa and at 20°C. CO₂ production in the organic soil was 2 times higher than in mineral soil. Net ammonification in organic soil was negative for most of the T‒ψ variations, while in mineral soil it was positive. Net nitrification in organic soil was negative only at the maximum water potential and temperature (0 MPa, 28°C). The highest rate was between 0 and −0.3 MPa and between 20 and 28°C. In mineral soil NO₃⁻ accumulated at all T‒ψ variations with a maximum at 20^oC and −0.3 MPa. We concluded that in organic soil the immobilization of NH₄⁺ is the dominant process in the N‒cycling. Nevertheless, decreasing of total N mineralized at 0 MPa and 20—28^oC can be explained by denitrification.     

Analysis of the dynamics of plant residue mineralization and humification in soil

The quantitative aspects of mineralization and humification of organic residues in soil were analyzed on the basis of the experimental curves of their transformation and using three conceptual approaches. Ågren’s and Bosatta’s concept of the continuum of substrate quality loss accentuates the gradual reduction of the availability of the decomposable material for microorganisms. The discrete succession concept emphasizes the existence of morphologically and biochemically distinguishable stages (a fraction cascade) of transforming the organic debris into humus. According to the biochemical concept, the organic debris transformation is represented as the mineralization of individual organic substances with different rates, more often without taking into account the influence of humus formation. The testing of these concepts led to the conclusion that the discrete succession and biochemical concepts should be integrated for the elaboration of the theoretical basis for assessing the rate of organic debris transformation in the soil.     

Organic matter dynamics in a temperate forest as influenced by soil frost

In the future, climate models predict an increase in global surface temperature and during winter a changing of precipitation from less snowfall to more raining. Without protective snow cover, freezing can be more intensive and can enter noticeably deeper into the soil with effects on C cycling and soil organic matter (SOM) dynamics. We removed the natural snow cover in a Norway spruce forest in the Fichtelgebirge Mts. during winter from late December 2005 until middle of February 2006 on three replicate plots. Hence, we induced soil frost to 15 cm depth (at a depth of 5 cm below surface up to –5°C) from January to April 2006, while the snow‐covered control plots never reached temperatures < 0°C. Quantity and quality of SOM was followed by total organic C and biomarker analysis. While soil frost did not influence total organic‐C and lignin concentrations, the decomposition of vanillyl monomers (Ac/Ad)_V and the microbial‐sugar concentrations decreased at the end of the frost period, these results confirm reduced SOM mineralization under frost. Soil microbial biomass was not affected by the frost event or recovered more quickly than the accumulation of microbial residues such as microbial sugars directly after the experiment. However, in the subsequent autumn, soil microbial biomass was significantly higher at the snow‐removal (SR) treatments compared to the control despite lower CO₂ respiration. In addition, the water‐stress indicator (PLFA [cy17:0 + cy19:0] / [16:1ω7c + 18:1ω7c]) increased. These results suggest that soil microbial respiration and therefore the activity was not closely related to soil microbial biomass but more strongly controlled by substrate availability and quality. The PLFA pattern indicates that fungi are more susceptible to soil frost than bacteria.     

Effects of plants on net mineralization of nitrogen in forest soil microcosms

Summary The effects of plant roots on net N mineralization were examined by comparing soil microcosms with and without plants. Additionally, inorganic N amendments were used to test for competition for N between plants and microorganisms. Daily watering and the application of suction to microcosms eliminated the effects of transpiration on soil moisture content. Monthly litter collections reduced the influence of the aboveground portions of plants. Plants decreased net N mineralization by 23% during days 0–114 and then increased net mineralization by the same amount during days 144–124. Root-free soil collected from with-plant microcosms on day 244 evolved 24% more CO₂ in laboratory incubations than soil from without-plant microcosms. This indicates that plants had increased substrate availability to soil microorganisms. Inorganic N amendments had no significant effects on the microcosms or on laboratory soil incubations. Evidence is most consistent with the hypothesis that plant roots increased microbial activity due to the increased substrate availability. Different net N mineralization rates probably resulted from changes in the substrate C : N ratio.     

Potassium dynamics of a forest soil developed on a weathered schist regolith

Soils of the humid tropics are poor in available potassium due to intensive weathering and leaching of nutrients. A study was conducted to investigate the mineralogy and potassium supplying capacity of a forest soil developed on a weathered schist regolith. The quantity–intensity (Q/I) approach was used in thisstudy. The schist regolith showed deep weathering and intense leaching throughout the profile, resulting in low cation exchange capacity (CEC) and available K in soil and saprolite layers. The mineralogy of the regolith was dominanted by kaolinite, gibbsite and goethite. Feldspar, mica and mica–smectite minerals were observed in the lower saprolite layers. The Q/I parameters showed that the soils and saprolites were low in K supply power. This observation was attributed to weathering and intense leaching. The free energy values of K replacement (ΔG _r°) also suggest that soils and saprolites of the schist regolith were deficient in K. The Q/I parameters significantly correlated with organic carbon and clay content, CEC, pH and exchangeable K.     

Amino acid composition of soil organic matter

This study investigated the amino acid composition of soil organic matter extracted from ten surface soils in addition to surface soils from two long-term cropping systems [continuous corn (CCCC), corn-soybean-corn-soybean (CSCS), and corn-oats-meadow-meadow (COMM)] at two sites in Iowa: the Clarion-Webster Research Center (CWRC) and the Galva-Primghar Research Center (GPRC). Results showed that, with the exception of asparagine pluse aspartic acid and glutamine plus glutamic acid, the other 13 amino acids studied, expressed as perecentages of total amino acids extracted, were generally very uniform among the soils. The total amino acids extracted from the ten soils were significantly correlated with organic carbon (C) ( and clay content (, but not with total nitrogen (N), pH, or sand content. Expressed as percentages or organic C and N in soils, the amounts extracted ranged from 10.9% to 32.4% and from 12.0% to 27.4%, respectively. The amino acid N identified, expressed as percentages of organic N extracted, ranged from 32% to 50% and the C/N ratios of the extracted organic matter ranged from 10.1 to 14.9. The type of rotation did not significantly affect the total amino acid content of the soils from the same N treatment, but it did affect the total amino acid content of soils from the control plots. The total amino acids measured under the different crop rotations at the CWRC site were in the order: COMM>CCCC>CSCS. The order for the GPRC site was: CSCS>COMM>CCCC. The amino acid N identified, expressed as percentages of organic N extracted from soils at the CWRC site, ranged from 33.1% to 50% and for the GPRC site ranged from 26.5% to 51.4%. The C/N ratios of the organic matter extracted ranged from 10.4 to 14.1 and from 6.5 to 14.3 for the soils from CWRC and GPRC sites, respectively. Received: 26 May 1997     

Nitrous oxide flux from soil amino acid mineralization

Nitrous oxide (N₂O) is a greenhouse gas produced during microbial transformation of soil N that has been implicated in global climate warming. Nitrous oxide efflux from N fertilized soils has been modeled using NO₃⁻ content with a limited success, but predicting N₂O production in non-fertilized soils has proven to be much more complex. The present study investigates the contribution of soil amino acid (AA) mineralization to N₂O flux from semi-arid soils. In laboratory incubations (−34 kPa moisture potential), soil mineralization of eleven AAs (100 μg AA-N g⁻¹ soil) promoted a wide range in the production of N₂O (156.0±79.3 ng N₂O-N g⁻¹ soil) during 12 d incubations. Comparison of the δ¹³C content (‰) of the individual AAs and the δ¹³C signature of the respired AA-CO₂-C determined that, with the exception of TYR, all of the AAs were completely mineralized during incubations, allowing for the calculation of a N₂O-N conversion rate from each AA. Next, soils from three different semi-arid vegetation ecosystems with a wide range in total N content were incubated and monitored for CO₂ and N₂O efflux. A model utilizing CO₂ respired from the three soils as a measure of organic matter C mineralization, a preincubation soil AA composition of each soil, and the N₂O-N conversion rate from the AA incubations effectively predicted the range of N₂O production by all three soils. Nitrous oxide flux did not correspond to factors shown to influence anaerobic denitrification, including soil NO₃⁻ contents, soil moisture, oxygen consumption, and CO₂ respiration, suggesting that nitrification and aerobic nitrifier denitrification could be contributing to N₂O production in these soils. Results indicate that quantification of AA mineralization may be useful for predicting N₂O production in soils.     

Influence of forest disturbance on CO2, CH4 and N2O fluxes from larch forest soil in the permafrost taiga region of eastern Siberia

Abstract

To evaluate the effect of increasing forest disturbances on greenhouse gas budgets in a taiga forest in eastern Siberia, CO₂, CH₄ and N₂O fluxes from the soils were measured during the growing season in intact, burnt and clear-felled larch forests (4–5 years after the disturbance). Soil temperature and moisture were higher at the two disturbed sites than at the forest site. A 64–72% decrease in the Q ₁₀ value of soil CO₂ flux from the disturbed sites compared with the forest site (5.92) suggested a reduction in root respiration and a dominance of organic matter decomposition at the disturbed sites. However, the cumulative CO₂ emissions (May–August) were not significantly different among the sites (2.81–2.90 Mg C ha^?1 per 3 months). This might be because decreased larch root respiration was compensated for by increased organic matter decomposition resulting from an increase in the temperature and root respiration of invading vegetation at the disturbed sites. The CH₄ uptake (kg C ha^?1 per 4 months [May–September]) at the burnt site was significantly higher (–0.15) than the uptake at the forest (–0.045) and clear-felled sites (0.0027). Although there were no significant differences among the sites, N₂O emission (kg N ha^?1 per 4 months) was slightly lower at the burnt site (0.013) and higher at the clear-felled site (0.068) than at the forest site (0.038). This different influence of burning and tree felling on CH₄ and N₂O fluxes might result from changes in the physical and chemical properties of the soil with respect to forest fire.     

Nitrogen mineralization in relation to site history and soil properties for a range of Australian forest soils

Rates of N mineralization were measured in 27 forest soils encompassing a wide range of forest types and management treatments in south-east Australia. Undisturbed soil columns were incubated at 20°C for 68 days at near field-capacity water content, and N mineralization was measured in 5-cm depth increments to 30 cm. The soils represented three primary profile forms: gradational, uniform and duplex. They were sampled beneath mature native Eucalyptus sp. forest and from plantations of Pinus radiata of varying age (<1 to 37 years). Several sites had been fertilized, irrigated, or intercropped with lupins. The soils ranged greatly in total soil N concentrations, C:N ratios, total P, and sand, silt, and clay contents. Net N mineralization for individual soil profiles (0–30 cm depth) varied from 2.0 to 66.6 kg ha^-1 over 68 days, with soils from individual depths mineralizing from <0 (immobilization) to 19.3 kg ha^-1 per 5 cm soil depth. Only 0.1–3.1% of the total N present at 0–30 cm in depth was mineralized during the incubation, and both the amount and the percentage of total N mineralized decreased with increasing soil depth. N fertilization, addition of slash residues, or intercropping with lupins in the years prior to sampling increased N mineralization. Several years of irrigation of a sandy soil reduced levels of total N and C, and lowered rates of N mineralization. Considuring all soil depths, the simple linear correlations between soil parameters (C, N, P, C:N, C:P, N:P, coarse sand, fine sand, silt, clay) and N mineralization rates were generally low (r<0.53), but these improved for total N (r=0.82) and organic C (r=0.79) when the soils were grouped into primary profile forms. Prediction of field N-mineralization rates was complicated by the poor correlations between soil properties and N mineralization, and temporal changes in the pools of labile organic-N substrates in the field.