Small-scale heterogeneity in carbon dioxide, nitrous oxide and methane production from aggregates of a cultivated sandy-loam soil

Spatial variability in carbon dioxide (CO₂), nitrous oxide (N₂O) and methane (CH₄) emissions from soil is related to the distribution of microsites where these gases are produced. Porous soil aggregates may possess aerobic and anaerobic microsites, depending on the water content of pores. The purpose of this study was to determine how production of CO₂, N₂O and CH₄ was affected by aggregate size and soil water content. An air-dry sandy loam soil was sieved to generate three aggregate fractions (<0.25 mm, 0.25–2 mm and 2–6 mm) and bulk soil (<2 mm). Aggregate fractions and bulk soil were moistened (60% water-filled pore space, WFPS) and pre-incubated to restore microbial activity, then gradually dried or moistened to 20%, 40%, 60% or 80% WFPS and incubated at 25 °C for 48 h. Soil respiration peaked at 40% WFPS, presumably because this was the optimum level for heterotrophic microorganisms, and at 80% WFPS, which corresponded to the peak N₂O production. More CO₂ was produced by microaggregates (<0.25 mm) than macroaggregate (>0.25 mm) fractions. Incubation of aggregate fractions and soil at 80% WFPS with acetylene (10 Pa and 10 kPa) and without acetylene showed that denitrification was responsible for 95% of N₂O production from microaggregates, while nitrification accounted for 97–99% of the N₂O produced by macroaggregates and bulk soil. This suggests that oxygen (O₂) diffusion into and around microaggregates was constrained, whereas macroaggregates remained aerobic at 80% WFPS. Methane consumption and production were measured in aggregates, reaching 1.1–6.4 ng CH₄–C kg⁻¹ soil h⁻¹ as aggregate fractions and soil became wetter. For the sandy-loam soil studied, we conclude that nitrification in aerobic microsites contributed importantly to total N₂O production, even when the soil water content permitted denitrification and CH₄ production in anaerobic microsites. The relevance of these findings to microbial processes controlling N₂O production at the field scale remains to be confirmed.     

Denitrification rates in relation to groundwater level in a peat soil under grassland

In this study spatial and temporal relations between denitrification rates and groundwater levels were assessed for intensively managed grassland on peat soil where groundwater levels fluctuated between 0 and 1 m below the soil surface. Denitrification rates were measured every 3–4 weeks using the C₂H₂ inhibition technique for 2 years (2000–2002). Soil samples were taken every 10 cm until the groundwater level was reached. Annual N losses through denitrification averaged 87 kg N ha^-1 of which almost 70% originated from soil layers deeper than 20 cm below the soil surface. N losses through denitrification accounted for 16% of the N surplus at farm-level (including mineralization of peat), making it a key-process for the N efficiency of the present dairy farm. Potential denitrification rates exceeded actual denitrification rates at all depths, indicating that organic C was not limiting actual denitrification rates in this soil. The groundwater level appeared to determine the distribution of denitrification rates with depth. Our results were explained by the ample availability of an energy source (degradable C) throughout the soil profile of the peat soil.This revised version was published online November 2003 with corrections to Figure 4 and in February 2004 with corrections to Figure 2.     

Increase in nitrous oxide production in soil induced by ammonium and organic carbon

We observed that soil cores collected in the field containing relatively high NH _inf4 ^sup+ and C substrate levels produced relatively large quantities of N₂O. A series of laboratory experiments confirmed that the addition of NH _inf4 ^sup+ and glucose to soil increase N₂O production under aerobic conditions. Denitrifying enzyme activity was also increased by the addition of NH _inf4 ^sup+ and glucose. Furthermore, NH _inf4 ^sup+ and glocose additions increased the production of N₂O in the presence of C₂H₂. Therefore, we concluded that denitrification was the most likely source of N₂O production. Denitrification was not, however, directly affected by NH _inf4 ^sup+ in anaerobic soil slurries, although the use of C substrate increased. In the presence of a high substrate C concentration, N₂O production by denitrifiers may be affected by NO _inf3 ^sup- supplied from NH _inf4 ^sup+ through nitrification. Alternatively, N₂O may be produced during mixotrophic and heterotrophic growth of nitrifiers. The results indicated that the NH _inf4 ^sup+ concentration, in addition to NO _inf3 ^sup- , C substrate, and O₂ concentrations, is important for predicting N₂O production and denitrification under field conditions.     

Soil and residue management effects on cropping conditions and nitrous oxide fluxes under controlled traffic in Scotland2. Nitrous oxide, soil N status and weather

Nitrogen from fertilisers and crop residues can be lost as nitrous oxide (N₂O), a greenhouse gas that causes an increase in global warming and also depletes stratospheric ozone. Nitrous oxide emissions, soil chemical status, temperature and N₂O concentration in the soil atmosphere were measured in a field experiment on soil compaction in loam and sandy loam (cambisols) soils in south-east Scotland. The overall objective was to discover how the intensity and distribution of soil compaction by tractor wheels or by roller just before sowing influenced crop performance, soil conditions and production and emissions of N₂O under controlled traffic conditions. Compaction treatments were zero, light compaction by roller (up to 1 Mg per metre of length) and heavy compaction by loaded tractor (up to 4.2 Mg). In this paper we report the effects on production and emissions of N₂O and relate them to soil and crop conditions. Nitrous oxide fluxes were substantial only when the soil water content was high (>27 g per 100 g). Fertiliser application stimulated emissions in the spring whereas crop residues stimulated emissions in autumn and winter. Heavy compaction increased N₂O emissions after fertiliser application or residue incorporation more than light or zero compaction. The bulk densities of the heavily and lightly compacted soils were up to 89% and 82% of the theoretical (Proctor) maxima. Higher soil cone resistances, temperatures and nitrogen availability and lower gas diffusivities and air-filled porosities combined to make the heavily compacted soil more anaerobic and likely to denitrify than the zero or lightly compacted soil. Compaction sufficient to increase N₂O emissions significantly corresponded with adverse soil conditions for winter barley (Hordeum vulgare L.) growth. Soil tillage, which ensures that soil compaction is no greater than in our light treatment and is confined to near the soil surface, may help to mitigate both surface fluxes of N₂O and losses to the subsoil.     

A method of selective inhibition to distinguish between nitrification and denitrification as sources of nitrous oxide in soil

Summary Nitrapyrin and C₂H₂ were evaluated as nitrification inhibitors in soil to determine the relative contributions of denitrification and nitrification to total N₂O production. In laboratory experiments nitrapyrin, or its solvent xylene, stimulated denitrification directly or indirectly and was therefore considered unsuitable. Low partial pressures of C₂H₂ (2.5–5.0 Pa) inhibited nitrification and had only a small effect on denitrification, which made it possible to estimate the contribution of denitrification. The contribution of nitrification was estimated by subtracting the denitrification value from total N₂O production (samples without C₂H₂). The critical C₂H₂ concentrations needed to achieve inhibition of nitrification, without affecting the N₂O reductase in denitrifiers, must be individually determined for each set of experimental conditions.     

The influence of winter soil cover on spring nitrous oxide emissions from an agricultural soil

In temperate regions, a majority of N₂O is emitted during spring soil thawing. We examined the influence of two winter field covers, snow and winter rye, on soil temperature and subsequent spring N₂O emissions from a New York corn field over two years. The first season (2006-07) was a cold winter (2309 h below 0 °C at 8 cm soil depth), historically typical for the region. The snow removal treatment resulted in colder soils and higher N₂O fluxes (73.3 vs. 57.9 ng N₂O-N cm⁻² h⁻¹). The rye cover had no effect on N₂O emissions. The second season (2007-08) was a much milder winter (1271 h below freezing at 8 cm soil depth), with lower N₂O fluxes overall. The winter rye cover resulted in lower N₂O fluxes (5.9 vs. 33.7 ng N₂O-N cm⁻² h⁻¹), but snow removal had no effect. Climate scenarios predict warmer temperature and less snow cover in the region. Under these conditions, spring N₂O emissions can be expected to decrease and could be further reduced by winter rye crops.     

Laboratory investigations into the effects of the pesticides mancozeb, chlorothalonil, and prosulfuron on nitrous oxide and nitric oxide production in fertilized soil

Independent soil microcosm experiments were used to investigate the effects of the fungicides mancozeb and chlorothalonil, and the herbicide prosulfuron, on N₂O and NO production by nitrifying and denitrifying bacteria in fertilized soil. Soil cores were amended with NH₄NO₃ or NH₄NO₃ and pesticide, and the N₂O and NO concentrations were monitored periodically for approximately 48 h following amendment. Nitrification is the major source of N₂O and NO in these soils at soil moistures relevant to those observed at the field site where the cores were collected. At pesticide concentrations from 0.02 to 10 times that of a standard single application on a corn crop, N₂O and NO production was inhibited by all three pesticides. Generally N₂O production was inhibited by the pesticides from 10 to 62% and 20 to 98% at the lowest and highest dosages, respectively. Nitric oxide production was generally inhibited from about 5 to 47% and by 20 to 97% at the lowest and highest dosages, respectively. Nitrous oxide and nitric oxide production by nitrification was more susceptible to inhibition by these pesticides than denitrification. Production of both N₂O and NO by nitrification was inhibited by as much as 99%, at the highest concentration of pesticide applied. The net production of N₂O increased as soil moisture increased. The rate of NO production was greatest at the intermediate moistures investigated, between 14 and 19% gravimetric soil moisture, suggestive that nitrification is the dominant source of NO.     

Effect of three contrasting onion (Allium cepa L.) production systems on nitrous oxide emissions from soil

 N₂O emissions were measured from three contrasting onion (Allium cepa L.) production systems over an 8.5-month period. One system was established on soil where a clover sward had 3 months earlier been ploughed in (ploughed clover site). This production system followed conventional production management practices. The other two systems were established on soil where a mixed herb ley had 3 months earlier been either ploughed or rotovated. These last two production systems followed the guidelines of the International Federation of Organic Agriculture Movements (IFOAM). Cumulative N₂O emissions were significantly greater from the ploughed clover site compared to the ploughed ley site (3.8 and 1.6 kg N₂O-N ha^–1, respectively), while cumulative N₂O emissions from the ploughed ley and rotovated ley sites were not significantly different from each other. Emissions from all sites were dominated by episodes of high N₂O flux activity following seedbed preparation and drilling, when soil water suction (SWS) was shown to be the rate-controlling variable. The decline in the N₂O fluxes after these peak emissions followed clear exponential relationships of the form F=Ae^{– kt} (r≥0.91), where F is the daily flux and A is the y-intercept. First-order decay constants (k) during these periods of declining N₂O fluxes (corresponding to half-lives of 2.6–3.0 days) were not significantly different in magnitude from the first-order rate constants that characterised the increasing SWS. Gross differences in cumulative emissions between the clover and ley sites were attributed to the influence of differing soil pHs at the two sites on the N₂O:(N₂O+N₂) ratio in the denitrification products. It also appeared that fertiliser applications to the clover site had both direct and indirect effects on N₂O emissions by: (1) enhancing N₂O emissions via potential nitrification, (2) increasing the NO₃ ^– supply for enhanced N₂O emissions via denitrification, and (3) influencing the N₂O:(N₂O+N₂) ratio by lowering soil pH and increasing NO₃ ^– concentrations. Onion crop yields were greater at the clover site, mainly due to the higher density of planting made possible under a conventional production philosophy. Expressing the yield on the basis of net N₂O emissions, 23 t onions kg^–1 N₂O-N was obtained from the ploughed clover, which was double that obtained for the two systems based on the ley site. However, when the N₂O emissions from the cultivation of the soils prior to the sowing of the onions was included, all three systems produced a similar yield per kilogram of N₂O-N emitted, averaging 10 t kg^–1. Received: 6 January 1999     

Nitrous oxide emission from an irrigated cotton field under semiarid subtropical conditions

In a 1-year study, quantification of nitrous oxide (N₂O) emission was made from a flood-irrigated cotton field fertilized with urea at 100kg N ha⁻¹ a⁻¹. Measurements were made during the cotton-growing season (May–November) and the fallow period (December–April). Of the total 95 sampling dates, 77 showed positive N₂O fluxes (range, 0.1 to 33.3g N ha⁻¹ d⁻¹), whereas negative fluxes (i.e., N₂O sink activity) were recorded on 18 occasions (range, −0.1 to −2.2g N ha⁻¹ d⁻¹). Nitrous oxide sink activity was more frequently observed during the growing season (15 out of 57 sampling dates) as compared to the fallow period (3 out of 38 sampling dates). During the growing season, contribution of N₂O to the denitrification gaseous N products was much less (average, 4%) as compared to that during the fallow period (average, 21%). Nitrous oxide emission integrated over the 6-month growing period amounted 324g N ha⁻¹, whereas the corresponding figure for the 6-month fallow period was 648g N ha⁻¹. Subtracting the N₂O sink activity (30.3g N ha⁻¹ and 3.8g N ha⁻¹ during the growing season and fallow period, respectively), the net N₂O emission amounted 938g N ha⁻¹ a⁻¹. Results suggested that high soil moisture and temperature prevailing under flood-irrigated cotton in the Central Punjab region of Pakistan though favor high denitrification rates, but are also conducive to N₂O reduction thus leading to relatively low N₂O emission.     

Responses of nitrous oxide, dinitrogen and carbon dioxide production and oxygen consumption to temperature in forest and agricultural light-textured soils determined by model experiment

 The experiment, carried out on a forest and arable light-textured soil, was designed to study the temperature response of autotrophic and heterotrophic N₂O production and investigate how the N₂O flux relates to soil respiration and O₂ consumption. Although N₂O production seemed to be stimulated by a temperature increase in both soils, the relationship between production rate and temperature was different in the two soils. This seemed to depend on the different contribution of nitrification and denitrification to the overall N₂O flux. In the forest soil, almost all N₂O was derived from nitrification, and its production rate rose linearly from 2  °C to 40  °C. A stronger effect of temperature on N₂O production was observed in the arable soil, apparently as a result of an incremental contribution of denitrification to the overall N₂O flux with rising temperature. The soil respiration rate increased exponentially with temperature and was significantly correlated with N₂O production. O₂ consumption stimulated denitrification in both soils. In the arable soil, N₂O and N₂ production increased exponentially with decreasing O₂ concentration, though N₂O was the main gas produced at any temperature. In the forest soil, only the N₂ flux was related exponentially to O₂ consumption and it outweighed the rate of N₂O production only at >34  °C. Thus, it appears that in the forest soil, where nitrification was the main source of N₂O, temperature affected the N₂O flux less dramatically than in the arable soil, where a temperature increase strongly stimulated N₂O production by enhancing favourable conditions for denitrification. Received: 26 August 1998     

Temporal and spatial patterns of denitrification enzyme activity and nitrous oxide fluxes in three adjacent vegetated riparian buffer zones

The aim of this study was to investigate temporal and spatial patterns of denitrification enzyme activity (DEA) and nitrous oxide (N₂O) fluxes in three adjacent riparian sites (mixed vegetation, forest and grass). The highest DEA was found in the surface (0–30 cm) soil and varied between 0.7±0.1 mg N kg^–1 day^–1 at 5°C and 5.9±0.4 mg N kg^–1 day^–1 at 15°C. There was no significant difference (P >0.05) between the DEA in the uppermost (0–30 cm and 60–90 cm) soil depths under different vegetation covers. In the two deepest (120–150 cm and 180–210 cm) soil depths the DEA varied between 0.0±0.0 mg N kg^–1 day^–1 at 5°C and 4.4±0.9 mg N kg^–1 day^–1 at 15°C and was clearly associated with the accumulation of buried organic carbon (OC). Two threshold values of OC were observed before DEA started to increase significantly, namely 5 and 25 g OC kg^–1 soil at 10–15°C and 5°C, respectively. In the three riparian sites N₂O fluxes varied between a net N₂O uptake of –0.6±0.4 mg N₂O-N m^–2 day^–1 and a net N₂O emission of 2.5±0.3 mg N₂O-N m^–2 day^–1. The observed N₂O emission did not lead to an important pollution swapping (from water pollution to greenhouse gas emission). Especially in the mixed vegetation and forest riparian site highest N₂O fluxes were observed upslope of the riparian site. The N₂O fluxes showed no clear temporal trend.     

Nitrate removal, denitrification and nitrous oxide production in the riparian zone of an ephemeral stream

Riparian zones are important features of the landscape that can buffer waterways from non-point sources of nitrogen pollution. Studies of perennial streams have identified denitrification as one of the dominant mechanisms by which this can occur. This study aimed to assess nitrate removal within the riparian zone of an ephemeral stream and characterise the processes responsible, particularly denitrification, using both in-situ and laboratory techniques. To quantify rates of groundwater nitrate removal and denitrification in-situ, nitrate was added to two separate injection-capture well networks in a perched riparian aquifer of a low order ephemeral stream in South East Queensland, Australia. Both networks also received bromide as a conservative tracer and one received acetylene to inhibit the last step of denitrification. An average of 77 ± 2% and 98 ± 1% of the added nitrate was removed within a distance of 40 cm from the injection wells (networks with acetylene and without, respectively). Based on rates of N₂O production in the network with added acetylene, denitrification was not a major mechanism of nitrate loss, accounting for only 3% of removal. Reduction of nitrate to ammonium was also not a major pathway in either network, contributing <4%. Relatively high concentrations of oxygen in the aquifer following recent filling by stream water may have reduced the importance of these two anaerobic pathways. Alternatively, denitrification may have been underestimated using the in-situ acetylene block technique. In the laboratory, soils taken from two depths at each well network were incubated with four nitrate-N treatments (ranging from ambient concentration to an addition of 15 mg N l⁻¹), with and without added acetylene. Potential rates of denitrification, N₂O production and N₂O:N₂ ratios increased with nitrate additions, particularly in shallow soils. Potential rates of denitrification observed in the laboratory were equivalent in magnitude to nitrate removal measured in the field (mean 0.26 ± 0.12 mg N kg of dry soil⁻¹ d⁻¹), but were two orders of magnitude greater than denitrification measured in the field with added acetylene. The relative importance of assimilatory vs. dissimilatory processes of nitrate removal depends on environmental conditions in the aquifer, particularly hydrology and its effects on dissolved oxygen concentrations. Depending on seasonal conditions, aquifers of ephemeral streams like the study site are likely to fluctuate between oxic and anoxic conditions; nevertheless they may still function as effective buffers. While denitrification to N₂ is a desirable outcome from a management perspective, assimilation into biomass can provide a rapid sink for nitrate, thus helping to reduce short-term delivery of nitrate downstream. Longer-term studies are needed to determine the overall effectiveness of riparian buffers associated with ephemeral streams in mitigating nitrate loads reaching downstream ecosystems.     

Transformation of nitrogen and nitrous oxide emission from grassland soils as affected by compaction

Animal trampling is one of the main factors responsible for soil compaction under grazed pastures. Soil compaction is known to change the physical properties of the soil thereby affecting the transformation of nitrogen (N) and the subsequent of release of N as nitrous oxide (N₂O). The form of N source added to these compacted soils further affects N emissions. Here we determine the interactive effects of soil compaction and form of N sources (cattle urine and ammonium, nitrate and urea fertilizers) on the loss of N through N₂O emission from grassland soil. Overall, soil compaction caused a seven-fold increase in the N₂O flux, the total N₂O fluxes for the entire experimental period ranged from 2.62 to 61.74 kg N₂O-N ha⁻¹ for the compacted soil and 1.12 to 4.37 kg N₂O-N ha⁻¹ for the uncompacted soil. Among the N sources, the highest emissions were measured with nitrate application, emissions being 10 times more than those from other N sources for compacted soil, suggesting that the choice of N fertilizer can go a long way in mitigating N₂O emissions in compacted grasslands.     

Evolution of dinitrogen and nitrous oxide from the soil to the atmosphere through rice plants

Summary It is commonly assumed that a large fraction of fertilizer N applied to a rice (Oryza sativa L.) field is lost from the soil-water-plant system as a result of denitrification. Direct evidence to support this view, however, is limited. The few direct field, denitrification gas measurements that have been made indicate less N loss than that determined by ¹⁵N balance after the growing season. One explanation for this discrepancy is that the N₂ produced during denitrification in a flooded soil remains trapped in the soil system and does not evolve to the atmosphere until the soil dries or is otherwise disturbed. It seems likely, however, that N₂ produced in the soil uses the rice plants as a conduit to the atmosphere, as does methane. Methane evolution from a rice field has been demonstrated to occur almost exclusively through the rice plants themselves. A field study in Cuttack, India, and a greenhouse study in Fort Collins, Colorado, were conducted to determine the influence of rice plants on the transport of N₂ and N₂O from the soil to the atmosphere. In these studies, plots were fertilized with 75 or 99 atom % ¹⁵N-urea and ¹⁵N techniques were used to monitor the daily evolution of N₂ and N₂O. At weekly intervals the amount of N₂+N₂O trapped in the flooded soil and the total-N and fertilized-N content of the soil and plants were measured in the greenhouse plots. Direct measurement of N₂+N₂O emission from field and greenhouse plots indicated that the young rice plant facilitates the efflux of N₂ and N₂O from the soil to the atmosphere. Little N gas was trapped in the rice-planted soils while large quantities were trapped in the unplanted soils. N losses due to denitrification accounted for only up to 10% of the loss of added N in planted soils in the field or greenhouse. The major losses of fertilizer N from both the field and greenhouse soils appear to have been the result of NH₃ volatilization.     

Influence of soil properties on the turnover of nitric oxide and nitrous oxide by nitrification and denitrification at constant temperature and moisture

 Soils are a major source of atmospheric NO and N₂O. Since the soil properties that regulate the production and consumption of NO and N₂O are still largely unknown, we studied N trace gas turnover by nitrification and denitrification in 20 soils as a function of various soil variables. Since fertilizer treatment, temperature and moisture are already known to affect N trace gas turnover, we avoided the masking effect of these soil variables by conducting the experiments in non-fertilized soils at constant temperature and moisture. In all soils nitrification was the dominant process of NO production, and in 50% of the soils nitrification was also the dominant process of N₂O production. Factor analysis extracted three factors which together explained 71% of the variance and identified three different soil groups. Group I contained acidic soils, which showed only low rates of microbial respiration and low contents of total and inorganic nitrogen. Group II mainly contained acidic forest soils, which showed relatively high respiration rates and high contents of total N and NH₄ ⁺. Group III mainly contained neutral agricultural soils with high potential rates of nitrification. The soils of group I produced the lowest amounts of NO and N₂O. The results of linear multiple regression conducted separately for each soil group explained between 44–100% of the variance. The soil variables that regulated consumption of NO, total production of NO and N₂O, and production of NO and N₂O by either nitrification or denitrification differed among the different soil groups. The soil pH, the contents of NH₄ ⁺, NO₂ ^– and NO₃ ^–, the texture, and the rates of microbial respiration and nitrification were among the important variables. Received: 28 October 1999     

Effects of transient anaerobic conditions in the presence of acetylene on subsequent aerobic respiration and N2O emission by soil aggregates

Our objective was to assess the effect of anaerobic conditioning in the presence of acetylene on subsequent aerobic respiration and N₂O emission at the scale of soil aggregates. Nitrous oxide production was measured in intact soil aggregates Δ (compacted aggregates without visible porosity) and Γ (aggregates with visible porosity) incubated under oxic conditions, with or without anaerobic conditioning for 6 d. N₂O emissions were much higher in aggregates that had been submitted to anaerobic conditioning than in aggregates that did not experience this conditioning, although very little NO₃⁻ remained in soil after the anaerobic period. ¹⁵N isotope tracing technique was used to check whether N₂O came from nitrification or denitrification. The results showed that denitrification was the major process responsible for N₂O emissions. The aerobic CO₂ production rate was also measured in intact soil aggregates. It was greater in aggregates submitted to anaerobic conditioning than in those that were not, suggesting that the anaerobic conditioning lead to an accumulation of small compounds including fatty acids that are readily available for microbial decomposition in aerobic conditions. This process increases the aerobic CO₂ production and favours the N₂O emissions through denitrification.     

Nitrifier dominance of Arctic soil nitrous oxide emissions arises due to fungal competition with denitrifiers for nitrate

Arctic soils emit nitrous oxide, which is a potent greenhouse gas and also represents an important loss of nitrogen to oligotrophic Arctic ecosystems. However, little is known about the temperature sensitivity of nitrous oxide release in Arctic soils or the organisms mainly responsible for it. We investigated controls on nitrous oxide emissions in an Arctic soil across a typical temperature range (between 4 and 13 °C) on Truelove Lowland, Devon Island, Canada (75°40′N 84°35′W) at two different moisture contents. When fertilized with ammonia or nitrate, nitrous oxide emissions and temperature dependence of nitrous oxide emissions were insensitive to soil moisture content but linked to nitrification rates. Stable isotope analysis revealed that nitrous oxide was predominantly released by nitrifiers. However, nitrous oxide emissions were not linked to nitrifier prevalence with an insignificant (P < 0.219) increase in amoA genes and a (P < 0.01) decrease in archaeal nitrifiers. In contrast, denitrifier nosZ prevalence was 10,000 times greater than that of nitrifiers and was related to nitrous oxide emission potential when soils were fertilized with nitrate. Manipulating water-filled pore space should have changed the pattern of N₂O emissions. We used selective inhibitors to further explore why denitrification did not occur under field conditions when we manipulated water-filled pore space or when we used ¹⁵N analysis. When fungi were inhibited in the soil, nitrous oxide emissions from denitrifiers increased with no change in nitrous oxide released by nitrifiers. When fungi were active in the soil, there was little available nitrate but when fungi were inhibited, available soil nitrate increased over the incubation period. The dominance of nitrifiers in nitrous oxide emissions from Arctic soils under field conditions is linked to the competition for nitrate between fungi and denitrifiers.     

Incongruous variation of denitrifying bacterial communities as soil N level rises in Canadian canola fields

Soil N fertilization stimulates the activity of the soil bacterial species specialized in performing the different steps of the denitrification processes. Different responses of these bacterial denitrifiers to soil N management could alter the efficiency of reduction of the greenhouse gas N₂O into N₂ gas in cultivated fields. We used next generation sequencing to show how raising the soil N fertility of Canadian canola fields differentially modifies the diversity and composition of nitrite reductase (nirK and nirS) and nitrous oxide reductase (nosZ) gene-carrying denitrifying bacterial communities, based on a randomized complete blocks field experiment. Raising soil N levels increased up to 60% the ratio of the nirK to nirS genes, the two nitrite reductase coding genes, in the Brown soil and up to 300% in the Black soil, but this ratio was unaffected in the Dark Brown soil. Raising soil N levels also increased the diversity of the bacteria carrying the nitrite reductase gene nirK (Simpson index, P = 0.0417 and Shannon index, 0.0181), and changed the proportions of the six dominant phyla hosting nirK, nirS, and nosZ gene-carrying bacteria. The level of soil copper (Cu) and the abundance of nirK gene, which codes for a Cu-dependent nitrite reductase, were positively related in the Brown (P = 0.0060, R² = 0.48) and Dark Brown (0.0199, R² = 0.59) soils, but not in the Black soil. The level of total diversity of the denitrifying communities tended to remain constant as N fertilization induced shifts in the composition of these denitrifying communities. Together, our results indicate that higher N fertilizer rate increases the potential risk of nitrous oxide (N₂O) emission from canola fields by promoting the proliferation of the mostly adaptive N₂O-producing over the less adaptive N₂O-reducing bacterial community.     

Effect of management, climate and soil conditions on N2O and NO emissions from an arable crop rotation using high temporal resolution measurements

Quantifying the nitrous oxide (N₂O) and nitric oxide (NO) fluxes emitted from croplands remains a major challenge. Field measurements in different climates, soil and agricultural conditions are still scarce and emissions are generally assessed from a small number of measurements. In this study, we report continuously measured N₂O and NO fluxes with a high temporal resolution over a 2-year crop sequence of barley and maize in northern France. Measurements were carried out using 6 automatic chambers at a rate of 16 mean flux measurements per day. Additional laboratory measurements on soil cores were conducted to study the response of NO and N₂O emissions to environmental conditions.The detection limit of the chamber setup was found to be 3 ng N m⁻² s⁻¹ for N₂O and 0.1 ng N m⁻² s⁻¹ for NO. Nitrous oxide fluxes were higher than the threshold 37% of the time, while they were 72% of the time for NO fluxes.The cumulated annual NO and N₂O emissions were 1.7 kg N₂O-N ha⁻¹ and 0.5 kg NO-N ha⁻¹ in 2007, but 2.9 kg N₂O-N ha⁻¹ and 0.7 kg NO-N ha⁻¹ in 2008. These inter-annual differences were largely related to crop types and to their respective management practices. The forms, amounts and timing of nitrogen applications and the mineralization of organic matter by incorporation of crop residues were found to be the main factor controlling the emissions peaks. The inter-annual variability was also due to different weather conditions encountered in 2007 and 2008. In 2007, the fractioned N inputs applied on barley (54 kg ha⁻¹ in March and in April) did not generate N₂O emissions peaks because of the low rainfall during the spring. However, the significant rainfall observed in the summer and fall of 2007, promoted rapid decomposition of barley residues which caused high levels of N₂O emissions. In 2008, the application of dairy cattle slurry and mineral fertilizer before the emergence of maize (107 kg N_min ha⁻¹ or 130 kg N_tot ha⁻¹ in all) coincided with large rainfalls promoting both NO and N₂O emissions, which remained high until early summer.Laboratory measurements corroborated the field observations: NO fluxes were maximum at a water-filled pore space (WFPS) of around 27% while N₂O fluxes were optimal at 68% WFPS, with a maximum potentially 14 times larger than for NO.     

Contributions of nitrification and denitrification to N2O emissions from soils at different water-filled pore space

A combination of stable isotope and acetylene (0.01% v/v) inhibition techniques were used for the first time to determine N₂O production during denitrification, autotrophic nitrification and heterotrophic nitrification in a fertilised (200 kg N ha^–1) silt loam soil at contrasting (20–70%) water-filled pore space (WFPS). ¹⁵N-N₂O emissions from ¹⁴NH₄¹⁵NO₃ replicates were attributed to denitrification and ¹⁵N-N₂O from ¹⁵NH₄¹⁵NO₃ minus that from ¹⁴NH₄¹⁵NO₃ replicates was attributed to nitrification and heterotrophic nitrification in the presence of acetylene, as there was no dissimilatory nitrate reduction to ammonium or immobilisation and remineralisation of ¹⁵N-NO₃^–. All of the N₂O emitted at 70% WFPS (31.6 mg N₂O-N m^–2 over 24 days; 1.12 g N₂O-N g dry soil^–1; 0.16% of N applied) was produced during denitrification, but at 35–60% WFPS nitrification was the main process producing N₂O, accounting for 81% of ¹⁵N-N₂O emitted at 60% WFPS, and 7.9 g ¹⁵N-N₂O m^–2 (0.28 ng ¹⁵N-N₂O g dry soil^–1) was estimated to be emitted over 7 days during heterotrophic nitrification in the 50% WFPS treatment and accounted for 20% of ¹⁵N-N₂O from this treatment. Denitrification was the predominant N₂O-producing process at 20% WFPS (2.6 g ¹⁵N-N₂O m^–2 over 7 days; 0.09 ng ¹⁵N-N₂O g dry soil^–1; 85% of ¹⁵N-N₂O from this treatment) and may have been due to the occurrence of aerobic denitrification at this WFPS. Our results demonstrate the usefulness of a combined stable isotope and acetylene approach to quantify N₂O emissions from different processes and to show that several processes may contribute to N₂O emission from agricultural soils depending on soil WFPS.