Microtomographic analysis of pore space in a virgin soddy-podzolic soil

The method of X-ray microtomography was applied to study pore space of a virgin soddy-podzolic soil at the natural soil water content. The morphometric parameters of the pores of more than 100 μm in diameter were determined in the vertically oriented undisturbed soil monoliths (d = 3 cm, h = 3–4 cm) from the genetic horizons of the most differentiated part of the soil profile (the AY, AEL, EL, BEL, BT1, and BТ2 horizons). A tendency for the horizontal orientation of these pores was found in all the horizons, except for the humus (AY) horizon. Isolated vesicular pores of different sizes were abundant in the eluvial part of the profile. Numerous recent and relict phytogenic channels were found in the intraped mass of the BT2 horizon. Differently directed interfaces of structural units in the soil horizons were visualized. Cluster analysis was applied to estimate differences between the genetic horizons with respect to their textures, aggregate sizes, and shapes of pores as seen in vertical two-dimensional X-ray images.     

Changes in the pore space of soil constructions in physical laboratory models

The dynamics of pore space structure in different filled soil constructions during water infiltration and wetting–drying processes is studied. Model laboratory experiments in columns physically simulate water infiltration after penetration at a rate of 600 mm with free outflow from the lower end of the column followed by multiple drying of soil constructions composed by alternating layers of sand, peat, and A and В horizons of soddy-podzolic soil. In two- and three-dimensional tomographic images, changes in the pore space and the interpenetration of solid phase at the boundaries between individual horizons of soil constructions are analyzed.     

Influence of texture on habitable pore space and bacterial-protozoan populations in soil

Summary Soil texture affects pore space, and bacterial and protozoan populations in soil. In the present study we tested the hypothesis that bacteria are more protected from protozoan predation in fine-textured soils than in coarse-textured soils because they have a larger volume of protected pore space available to them. The experiment consisted of three sterilized Orthic Black Chernozemic soils (silty clay, clay loam, and sandy loam) inoculated with bacteria, two treatments (with and without protozoa), and five sampling dates. The soils were amended with glucose and mineral N on day 0. On day 4 bacterial numbers in all three soils were approximately 3×10⁹ g^–1 soil. The greatest reduction in bacteria due to protozoan grazing occurred between day 4 and day 7. Compared to the treatment without protozoa, bacteria in the treatment with protozoa were reduced by 68, 50, and 75% in the silty clay, clay loam, and sandy loam, respectively. On day 4, 2 days after the protozoan inoculation, all protozoa were active. The numbers were 10330, 4760, and 15 380 g^–1 soil for the silty clay, clay loam, and sandy loam, respectively. Between day 4 and day 7, the period of greatest bacterial decline, total protozoa increased greatly to 150480, 96160, and 192100 g^–1 soil for the three soils, respectively. Most protozoa encysted by day 7. In all soils the addition of protozoa significantly increased CO₂–C evolution per g soil relative to the treatment without protozoa. Our results support the hypothesis that bacteria are more protected from protozoan predation in fine-textured soils than in coarse-textured soils.     

Soil pore space arrangement as a geometric indicator of soil structure

Modern concepts of the morphology and geometry of soil structure are discussed. It is shown that the geometry of soil pores can serve as an indispensable indicator of the structural state of soils. The structural-functional significance of the shape and orientation of soil pores in addition to the total soil porosity is demonstrated by the example of agrogray and alluvial soils of the forest-steppe zone. Theoretical concepts and factual materials discussed in this paper can be considered the first stage of formalization of existing notions about the geometrical aspects of soil structure in the context of the systems arrangement of soils.     

基于土壤导气率的燥红土孔隙结构及弯曲连通性研究

土壤气体传输高度依赖土壤孔隙结构,导气率的获取简单、快速、高效,且对土壤结构破坏小,利用PL-300土壤空气传导性测量系统分别对不同含水率、不同容重条件下的原状土与扰动土进行导气率测量,展开针对土壤孔隙结构与弯曲连通性的讨论。结果表明:(1)原状土样本孔隙弯曲连通性随气相饱和度增加而增加的程度较扰动土样本显著,两者相对导气率与饱和度的关系曲线变化走势差异不大,表明即便饱和度一样的条件下,孔隙弯曲连通程度仍然不同;(2)原状土导气率依赖于大孔隙的存在,扰动土导气率不仅依赖于孔隙连通的程度,还取决于孔隙弯曲程度。基于土壤导气率对土壤孔隙结构及弯曲连通性的讨论,在建立气体传输模型时应考虑孔隙尺寸分布对导气率的影响,就原状土与扰动土不同的弯曲连通系数加以区分与讨论,为进一步揭示土壤气体传输的内在机制提供参考。     

Tomographic method of studying soil pore space: Current perspectives and results for some Russian soils

The methods and results of tomographic soil studies are discussed. A brief history of the development of the tomographic method and its application in soil science are described, and the major results obtained with the use of this method are outlined. An experience of the application of X-ray microtomography for studying the structure of undisturbed samples of some Russian soils is also considered. Three-dimensional images of soil aggregates and soil pore space with a resolution of 15.8 ??m have been obtained for the upper horizons of gray forest and soddy-podzolic soils. On the basis of these data, the merits and demerits of the tomographic method in comparison with the traditional method for studying soil pedality and pore space in thin sections are discussed. Certain advantages of the tomographic method provide good possibilities to study soil processes at a qualitatively new level. Priority directions of the development of tomographic studies in soil science are outlined.     

Assessment of soil salinity in the Eastern Nile Delta (Egypt) using geoinformation techniques

Rising soil salinity has been a major problem in the soils of Egypt in recent decades. High water tables are also a common problem in intensively irrigated areas and can lead to the development of salinity problems. Results show a high correlation between ETM+ band 3 and salt efflorescence. The ground values have a good correlation (r ² > 0.65) with estimated values. Results also show a positive correlation (r ² = 0.84) between the concentration of salt on the surface and water table levels of 70 cm or less. In the area under study, salt accumulation, ground water and inadequate drainage conditions are the major causes of salinization.     

On the updating of medium-scale soil maps

An approach for the updating of medium-scale soil maps is discussed. It is based on the use of modern remote sensing and geoinformation technologies. The boundaries of soil polygons shown on the old soil maps and their soil contents are corrected using geoinformation analysis of modern topographic data and automated interpretation of vegetation conditions as reflected on satellite imagery. The developed methods are illustrated by the particular examples.     

Maps of averaged spectral deviations from soil lines and their comparison with traditional soil maps

The analysis of 34 cloudless fragments of Landsat 5, 7, and 8 images (1985–2014) on the territory of Plavsk, Arsen’evsk, and Chern districts of Tula oblast has been performed. It is shown that bare soil surface on the RED–NIR plots derived from the images cannot be described in the form of a sector of spectral plane as it can be done for the NDVI values. The notion of spectral neighborhood of soil line (SNSL) is suggested. It is defined as the sum of points of the RED–NIR spectral space, which are characterized by spectral characteristics of the bare soil applied for constructing soil lines. The way of the SNSL separation along the line of the lowest concentration density of points on the RED–NIR spectral space is suggested. This line separates bare soil surface from vegetating plants. The SNSL has been applied to construct soil line (SL) for each of the 34 images and to delineate bare soil surface on them. Distances from the points with averaged RED–NIR coordinates to the SL have been calculated using the method of moving window. These distances can be referred to as averaged spectral deviations (ASDs). The calculations have been performed strictly for the SNSL areas. As a result, 34 maps of ASDs have been created. These maps contain ASD values for 6036 points of a grid used in the study. Then, the integral map of normalized ASD values has been built with due account for the number of points participating in the calculation (i.e., lying in the SNSL) within the moving window. The integral map of ASD values has been compared with four traditional soil maps on the studied territory. It is shown that this integral map can be interpreted in terms of soil taxa: the areas of seven soil subtypes (soddy moderately podzolic, soddy slightly podzolic, light gray forest. gray forest, dark gray forest, podzolized chernozems, and leached chernozems) belonging to three soil types (soddy-podzolic, gray forest, and chernozemic soils) can be delineated on it.     

Manipulation of the soil pore and microbial community structure in soil mesocosm incubation studies

Soil pore structure exerts a profound influence on distribution of moisture, O₂ and micro-organisms, thereby potentially controlling organic matter (OM) decomposition in soils. Although pore space is the habitat for soil micro-organisms and the actual location of soil biochemical processes, to date, very few studies looked into this relation mainly because of practical constraints. New experimental designs need to be developed which allow specific investigations of the relation between soil pore network structure, the microbial community and OM decomposition. We therefore subjected a sandy loam soil to a number of artificial manipulations namely i) compaction, ii) artificial change in particle size distribution, iii) addition of different substrates and iv) change in soil pH to manipulate soil pore structure and the decomposer community for use in lab incubation set-ups. Moisture retention data showed that compaction and artificial change in particle size distribution decreased volumes of large (9–300 μm) and small (<0.2 and 3–9 μm) pore size classes, respectively. PLFA signature analysis showed that acidification promoted fungi, while an effect of application of either sawdust or grass on the decomposer community was smaller. Acidification significantly reduced C mineralization and microbial biomass C. Surprisingly, the largest shift in microbial community (with promotion of fungi and protozoa relative to bacteria) over all treatments was observed in the treatments with artificially changed particle size distribution. We conclude that it is possible to ‘tailor’ soil pore structure and the decomposer community in soil mesocosm incubation experiments by such manipulations. However, non-targeted effects on microbial community structure, microbial biomass and gross C mineralization seem unavoidable.     

Modelling the effect of water distribution and hysteresis on air-filled pore space

Soil pore networks have a complex geometry, which is challenging to model in three dimensions. We use a Boolean model of pore space that has proved useful in modelling gas diffusion in dry structures to investigate the distribution of water in this pore space and to quantify the effects on pore connectivity to the soil surface. We first show how total porosity in dry soil influences connectivity via the percolation threshold. Then we show that our model simulation of the ‘ink-bottle effect’ can account for much of the hysteresis of the soil water. The differences in distribution of water between wetting and drying result in maintaining greater connectivity of the air-filled pore space during drying than during wetting. Hysteresis is large at small total porosities and slowly declines as porosity increases. During wetting much pore space is blocked when more than 40% of the pore space is filled with water, although during drying all non-isolated air-filled pores are connected to the surface. Even when soil is allowed to wet to near saturation, there are rapid increases in pore connectivity during drying, which may explain, for example, rapid increases in production and emission of nitrous oxide in soils near saturation.     

Large‐scale soil maps and a supplementary database for land use planning in Estonia

A soil map at the scale 1:10,000 serves as a major important document for land owners and local governments, which allows them to use soil information in their daily activity. The intensity of exploitation of soil maps will increase when the very map and its legend are supplemented, within colored and indexed polygons, with information about soil texture and reaction by layers, but also about the thickness and characterization of the epipedon, quality indices for soil assessment, classes of stoniness, and prevalent fractions of stones, erosion risk, etc. Special maps of agronomical status, with a list of proper measures for improvement of soils and their associations, should form a regular component of large‐scale mapping. As decrease in arable land and increase in the forest area are common trends in land use, these maps and general soil data should serve as the fundamental source of information for decision making concerning land use. Data indicating the suitability of any soil for any crop should be entered in a database. Application of GIS on any level of national economy, digitization of a large‐scale soil database and making it accessible to land users would allow to expand the amount of available information for each soil map polygon.     

Compaction and rotovation effects on soil pore characteristics of a loamy sand soil with contrasting organic matter content

The high input of mechanical energy in common agricultural practice can negatively affect soil structure. The impact of compaction (P) and rotovation (R) on soil pore characteristics was compared with those in soil from untreated reference (U) plots of a loamy sand soil receiving for 14 yr, either only mineral fertilizer (MF) or, in addition, animal manure (OF). Undisturbed soil cores were taken from two separate fields in consecutive years at an identical stage in the crop rotation. We measured soil organic carbon (OC), soil microbial biomass carbon (BC), and hot‐water extractable carbon (C_hot). Water retention, air permeability and gas diffusivity were determined at ?100 hPa in both years and for a range of water potentials in one of the years. The continued addition of animal manure had increased OC, BC, and C_hot compared with the soil receiving only mineral fertilizer. Soil under treatment OF had larger porosity than that from treatment MF. Treatment P eliminated this difference and significantly reduced the volume of macropores. This interaction between soil organic matter content and mechanical impact was also reflected in the gas diffusion data. Specific air permeability was mainly influenced by mechanical treatment. Modelling the diffusion data normalized to the inter‐aggregate pore space showed no significant treatment effects on pore‐connectivity, although there was a tendency of more water blockage in soil under treatment MF. More studies are needed to confirm this interpretation. Our studies indicate that organic manure increases soil porosity, but compaction reduces the related gas exchange effects to the level of compacted soils receiving mineral fertilizer.     

Boundary line analysis of the effect of water‐filled pore space on nitrous oxide emission from cores of arable soil

The boundary line has been proposed as a model of the effects of a variable on a biological response, when this variable might limit the response in only some of a set of observations. It is proposed that the upper boundary (in some circumstances the lower boundary) represents the response function of interest. Boundary‐line analysis is a method for estimating this response function from data. The approach has been used to model the emission of N₂O from soil in response to various soil properties. However, the methods that have been used to identify the boundary are based on somewhat ad hoc partitions of the data. A statistical model that we have presented previously has not been applied to this problem in soil science, and we do so here to represent how the water‐filled pore space (WFPS) of the soil affects the rate of N₂O emission. We derive a boundary‐line response that can be shown to be a better model for the data than an unbounded alternative by statistical criteria. Furthermore, the fitted boundary‐response model is consistent with past empirical observations and modelling studies with respect to both the WFPS at which the potential emission rate is largest and the measurement error for the emission rates themselves. We show how the fitted model might be used to interpret data on soil volumetric water content with respect to seasonal changes in potential emissions, and to compare potential emissions between soil series that have contrasting physical properties.     

Spatial location of carbon decomposition in the soil pore system

We sought to examine the distribution of carbon (C) decomposition within the framework of the soil pore system. Soils were sampled from a transect having a natural gradient in pore‐size distribution. After the addition of labelled wheat straw (¹³C) the repacked soil columns were incubated (25°C) at soil water matric potentials of either ?75 kPa or ?5 kPa and for either 4 or 90 days. Pore‐size distribution was determined for each soil column after incubation and soils were then analysed for soluble C, label‐derived residual C, label‐derived and native biomass C, nematode abundance, and ergosterol concentration as an indicator of fungal biomass. Overall, the data suggested that pore‐size distribution and its interaction with soil water give rise to a highly stratified biogeography of organisms through the pore system. This results in different rates of decomposition in pores of different size. Added plant material seemed to decompose most rapidly in soils with a relatively large volume of pores with neck diameters c. 15–60 µm and most slowly in soils with large volumes of pores with neck diameters < 4 µm. Regression analysis suggested that at matric potentials of both ?75 kPa and ?5 kPa the fastest decomposition of organic substrate occurred close to the gas–water interface. This analysis also implied that slower rates of decomposition occur in the pore class 60–300 µm. Correlations between the mass of soil biota and the pore volume of each pore class point to the importance of fungi and possibly nematodes in the rapid decomposition of C in the pores c. 15–60 µm during the early stages of decomposition.     

Micromorphometric features of pore space in the plow horizons of loamy soils

A computer-based analysis of thin sections has been applied to study pore space in the plow horizons of loamy soils in European Russia and Ukraine. Differences in the morphology of soil macro-and mesopores are shown. It is argued that agrogenic impacts result in the convergence of the shape and orientation of macropores in plowed loamy soils of the forest, forest-steppe, and steppe zones. At the same time, this convergence is not observed for the soil mesopores.     

Vegetation communities and the empty pore space of soils as indicators of catchment hydrology

The variable extent of saturated areas in a small sedgeland catchment was assessed by the measurement and prediction of water table distributions. Saturated areas were found to expand greatly during even small rainfall events and often covered most of the catchment. This effect is a result of the high water retention capacity of the soils, a property which is determined from measurements of the high energy moisture characteristic. The water table measurements also show that vegetation communities delineate areas of different soil moisture conditions.