Atlantic salmon in the North Pacific

The first catches of Atlantic salmon, Salmo salar L., in British Columbia (BC) waters occurred in 1987. The first reported escape of Atlantic salmon (2000 individuals) occurred in 1988. From 1988 to 1995, 97 799 Atlantic salmon were reported escaped from net pens in BC but the true number was higher as not all escapes are reported. Since 1987 a total of 9096 Atlantic salmon was caught in the coastal marine waters of BC, Washington and Alaska, and 188 were caught in fresh water. Most catches occurred in the Johnstone Strait area, where the abundance of salmon farms is highest. The most distant recovery occurred in 1994 when an Atlantic salmon was caught near the western end of the Alaska Peninsula. There have been no reports of successful reproduction of Atlantic salmon in the wild and no feral juveniles have been found. Atlantic salmon caught in the ocean in BC have substantial amounts of adipose tissue and they are heavier at length than fish caught in Alaska. The proportion of fish with prey items in their stomachs is generally low but higher in Alaska (13.1%) than in BC (5.8%). Most fish caught in fresh water are either maturing or mature.     

Relative resistance of Pacific salmon to infectious salmon anaemia virus

Infectious salmon anaemia (ISA) is a major disease of Atlantic salmon, Salmo salar, caused by an orthomyxovirus (ISAV). Increases in global aquaculture and the international movement of fish made it important to determine if Pacific salmon are at risk. Steelhead trout, Oncorhynchus mykiss, and chum, O. keta, Chinook, O. tshawytscha, coho, O. kisutch, and Atlantic salmon were injected intraperitoneally with a high, medium, or low dose of a Norwegian strain of ISAV. In a second challenge, the same species, except chum salmon, were injected with a high dose of either a Canadian or the Norwegian strain. Average cumulative mortality of Atlantic salmon in trial 1 was 12% in the high dose group, 20% in the medium dose group and 16% in the low dose group. The average cumulative mortality of Atlantic salmon in trial 2 was 98%. No signs typical of ISA and no ISAV-related mortality occurred among any of the groups of Oncorhynchus spp. in either experiment, although ISAV was reisolated from some fish sampled at intervals post-challenge. The results indicate that while Oncorhynchus spp. are quite resistant to ISAV relative to Atlantic salmon, the potential for ISAV to adapt to Oncorhynchus spp. should not be ignored.     

Dominance and predator avoidance in domesticated and wild masu salmon Oncorhynchus masou

ABSTRACT:   Dominance, aggression and predator avoidance were compared among farmed, sea-ranched and wild juvenile masu salmon Oncorhynchus masou in laboratory experiments. Domesticated fish (farmed and sea-ranched), which had been exposed to artificial selection, were not dominant against wild fish in pairwise contests, nor did they show greater aggressiveness. Farmed fish did show greater feeding than wild fish. Under chemically simulated predation risk, farmed fish were more willing to leave cover and feed than wild fish, indicating reduced predator avoidance in the farmed fish. Our results indicate that selection for fast growth (domestication) in masu salmon favors fish that respond to food quickly and ignore predation risk.     

Fecundity trends of Chinook salmon in the Pacific Northwest

Fecundity is an important demographic parameter that contributes to the productivity of anadromous fish stock dynamics. Yet, studies on fecundity patterns in Pacific salmon (Oncorhynchus spp.) often only include a few years of data, limiting our ability to understand spatio-temporal trends. Here, we used data on 43 hatchery Chinook salmon (O. tshawytscha, Salmonidae) populations in Washington State to evaluate whether average fecundity changed over the past three decades. We then used data from a subset of stocks (18) to evaluate the relationship between fecundity and body length. Our results revealed significant changes in fecundity across the 25-year study period with most stocks showing declines in fecundity over the past decade. Results further showed that Chinook salmon have decreased in length over this same period and that annual variation in mean length explains a majority (62%) of annual variation in mean fecundity. Specifically, we estimated that a 1-mm reduction in length results in 7.8 fewer eggs (95% CI = 6.6–8.9). Given that the majority of Pacific Northwest Chinook salmon in the environment and harvested in fisheries originate from hatchery releases and that nearby hatchery and wild populations generally have similar ocean distributions, these results likely reflect patterns for many populations not included. Combined, our results highlight the need to consider changes in body size and egg production when assessing the dynamics of anadromous fish populations and designing management or conservation plans, particularly for depressed populations.     

Patchiness structure and mortality of Pacific saury Cololabis saira larvae in the northwestern Pacific

Patchiness structure and mortality rates of Pacific saury Cololabis saira larvae were estimated in the frontal area of the Kuroshio Extension in spring 2000 and 2001. Drogued GPS buoys, which were used as Lagrangian reference points, were deployed to mark dense patches of saury larvae and a series of samplings was conducted using a neuston net around the buoys during the night over a period of several days. A total of 225 tows were conducted and 11 690 specimens were sampled during four buoy tracking. Despite the occurrence of water diffusion, patchiness density, distance between adjacent patches and patch size estimated by geostatistical analysis did not drastically change during the buoy tracking and these parameters were robust for the difference of variogram models and the threshold larval density defining patchiness. Such a stability of the patchiness allowed the estimation of larval mortality from the decrease of larval density for different size classes with respect to individual growth based on the samples taken repeatedly during the buoy tracking. Although low or negative values were obtained for the larvae right after hatching, probably due to continuous hatching, the estimates of mortality then increased and became stable in the range of 23–37% day⁻¹ with a small standard deviation until their knob length reached to 36 mm. In situ information on the patchiness structure and larval mortality provides crucial parameters for simulating the recruitment process of small pelagic fishes in high-resolution hydrodynamic models.     

Effects of the North Pacific Current on the productivity of 163 Pacific salmon stocks

Horizontal ocean transport can influence the dynamics of higher‐trophic‐level species in coastal ecosystems by altering either physical oceanographic conditions or the advection of food resources into coastal areas. In this study, we investigated whether variability in two North Pacific Current (NPC) indices was associated with changes in productivity of North American Pacific salmon stocks. Specifically, we used Bayesian hierarchical models to estimate the effects of the north‐south location of the NPC bifurcation (BI) and the NPC strength, indexed by the North Pacific Gyre Oscillation (NPGO), on the productivity of 163 pink, chum, and sockeye salmon stocks. We found that for salmon stocks located in Washington (WA) and British Columbia (BC), both the BI and NPGO had significant positive effects on productivity, indicating that a northward‐shifted bifurcation and a stronger NPC are associated with increased salmon productivity. For the WA and BC regions, the estimated NPGO effect was over two times larger than the BI effect for pink and chum salmon, whereas for sockeye salmon the BI effect was 2.4 times higher than the NPGO. In contrast to WA and BC stocks, we found weak effects of both horizontal ocean transport processes on the productivity of salmon stocks in Alaska. Our results indicated that horizontal transport pathways might strongly influence population dynamics of Pacific salmon in the southern part of their North American ranges, but not the northern part, suggesting that different environmental pathways may underlie changes in salmon productivity in northern and southern areas for the species under consideration.     

Demographic changes in Chinook salmon across the Northeast Pacific Ocean

The demographic structure of populations is affected by life history strategies and how these interact with natural and anthropogenic factors such as exploitation, climate change, and biotic interactions. Previous work suggests that the mean size and age of some North American populations of Chinook salmon (Oncorhynchus tshawytscha, Salmonidae) are declining. These trends are of concern because Chinook salmon are highly valued commercially for their exceptional size and because the loss of the largest and oldest individuals may lead to reduced population productivity. Using long‐term data from wild and hatchery populations, we quantified changes in the demographic structure of Chinook salmon populations over the past four decades across the Northeast Pacific Ocean, from California through western Alaska. Our results show that wild and hatchery fish are becoming smaller and younger throughout most of the Pacific coast. Proportions of older age classes have decreased over time in most regions. Simultaneously, the length‐at‐age of older fish has declined while the length‐at‐age of younger fish has typically increased. However, negative size trends of older ages were weak or non‐existent at the southern end of the range. While it remains to be explored whether these trends are caused by changes in climate, fishing practices or species interactions such as predation, our qualitative review of the potential causes of demographic change suggests that selective removal of large fish has likely contributed to the apparent widespread declines in average body sizes.     

Acoustical-optical assessment of Pacific herring and their predator assemblage in Prince William Sound,Alaska

The Pacific herring Clupea pallasi population in Prince William Sound (PWS), Alaska, is both a valuable commercial resource and an important forage species for marine fish and wildlife. Historically, the herring were managed by a combination of age-structured models and egg deposition estimates. When these methods predicted a large return for spring 1993 that failed to materialize, we began surveying with echointegration–purse seine methods. After a decade of acoustic surveys, we show the new approach yields highly precise biomass estimates, which are consistent with historical measures of the miles of beach spawning. When compared, we show the traditional methods overestimated stock biomass, which resulted in harvest rates approaching 40%. In contrast, the acoustic methods are most likely to underestimate biomass. Since the acoustic estimates can be quickly obtained, we recommend their use to set harvest quotas for the fishery in the spring just prior to harvest. The shift from the traditional preseason to inseason management practices for herring in PWS is consistent with the Precautionary Principle by the fact that protection of the spawning population does not rely on the ability of science to predict how the population is changing. Furthermore, synoptic infrared measurements on our night-time acoustic surveys revealed herring to be the most important winter forage to marine birds and wildlife in PWS, including the endangered Steller sea lion Eumetopias jubatus. Given the importance of forage to marine birds and wildlife in the North Pacific during the extended winter conditions (October–March), the implementation of inseason management for herring using echointegration–purse seine techniques may be the most effective method to restore depressed populations of marine birds and mammals in the North Pacific.     

Meridional patterns in the deep scattering layers and top predator distribution in the central equatorial Pacific

The deep scattering layers (DSL) in the central equatorial Pacific form an important prey resource in a relatively oligotrophic habitat. In March of 2006, we used a calibrated 38‐kHz SIMRAD EK60 scientific sonar to assess the spatial distribution of the deep scattering layer relative to broad‐scale oceanographic features and fine‐scale physical and biological measurements. We conducted a single continuous transect from approximately 10°S to 20°N at 170°W while measuring acoustic backscatter, current velocity and direction, temperature, salinity, oxygen, and fluorescence with depth, coincident with marine mammal occurrence. These data were combined with remotely sensed sea surface height, chlorophyll, and sea surface temperature data to examine patterns in DSL distribution. To analyze DSL density with depth, acoustic backscatter was binned into surface (<200 m), mid (200–550 m) and deep (550–1000 m) layers. Backscatter was highly correlated with chlorophyll‐a and low sea surface height anomalies and was greatest near the equator. We found high diel variability in DSL depth and scattering intensity between the mid and surface layers as well as a shallowing of the deep layer moving northward across the equator. Marine mammal sightings consisted primarily of odontocetes with their distribution coincident with higher acoustic densities of their forage base. Shifts in DSL distribution and scattering intensity are an important component towards understanding the behavior and distribution of highly migratory predator species.     

Prespawn mortality in adult spring Chinook salmon outplanted above barrier dams

Keefer ML, Taylor GA, Garletts DF, Gauthier GA, Pierce TM, Caudill CC. Prespawn mortality in adult spring Chinook salmon outplanted above barrier dams.
Ecology of Freshwater Fish 2010: 19: 361–372. © 2010 John Wiley & Sons A/S Abstract – Dams without fish passage facilities block access to much of the historic spawning habitat of spring Chinook salmon (Oncorhynchus tshawytscha) in Oregon’s Willamette River basin. Adult salmon are routinely outplanted above the dams to supplement natural production, but many die before spawning despite extensive suitable habitat. In 2004–2007, we examined prespawn mortality patterns using live detection and carcass recovery data for 242 radio‐tagged outplants. Total prespawn mortality was 48%, but variability was high, ranging from 0% to 93% for individual release groups. Prespawn mortality was strongly condition dependent, consistently higher for females than males and higher for early release groups. Across years, warm water temperature in the migration corridor and at the collection site was associated with sharply higher mortality. Results highlight a need for better evaluations of the effects of adult mortality on population reintroduction and recovery and relationships among prespawn mortality, dam‐related temperature change and salmon life history and behaviour.     

Heavy metals removal from influents to prevent mortality in salmon fry

The concentration of heavy metals in water, above certain values, threaten industrial salmon production and have occurred in two of the most important salmon producers, Norway and Chile. Aluminum and iron are two of the main heavy metals found in fresh water of the salmon industry, although manganese, zinc and copper have also been detected. In Chile, an experimental study found a solution to remove aluminum, iron and manganese. The present works studies copper and zinc removal by ionic exchange using AMBERLITE IRC747. The resin's removal capacity is 0.025 meq/g and does not depend on the solution's pH. An ionic exchange column was designed and continuously operated to remove copper and zinc from concentrations equal to 1000 μg/L of each metal. Then, the column was modularly operated with an aluminum, iron and manganese abatement system removing them by precipitation, oxidation (for iron and manganese) and granular filtration. When operating the modular system, the final aluminum, copper, iron, manganese, and zinc concentrations were 0.1, 0.4, 0.6, 0.8 and 0.3 μg/L, respectively. As a result, the system implemented obtained values below the maximum limits allowed for aluminum, iron, manganese, copper and zinc.     

Hydrolysed salmon meal as a replacement for salmon meal in practical diets for Pacific white shrimp (Litopenaeus vannamei)

A series of growth, feed stability and consumption trials were conducted to evaluate the efficacy of salmon by‐product in practical diets for Pacific white shrimp, Litopenaeus vannamei. This included a salmon by‐product meal (Salmon meal: SM) and a silage hydrolysate (hydrolysed salmon meal: HSM). The basal diet containing 120 g/kg SM was incrementally replaced (0. 25, 50, 75, 100%) by HSM to produce five test diets used in two trials. A sixth diet was included which evaluated gelatin supplementation (trial 1) or pH neutralization (trial 2). In trial 1, each diet was produced using two processing conditions (laboratory extruded and formed with meat grinder) and offered to shrimp in a clear water system. The results demonstrate that up to 50% of the SM can be used to replace with HSM; however, further increases resulted in reduced performance of shrimp. The addition of gelatin reduced leaching but there was limited effect of processing on leaching. There were no detectible effects of pH adjustment of the diets. Results indicated that the growth performance of shrimp has not influenced by HSM up to 60 g/kg to replace 50% of the SM in practical diets; however, higher levels resulted in significant decrease in performance.     

What the past tells us about the future of Pacific salmon research

The Larkin lectures are held every two years at the University of British Columbia in recognition of Dr. Peter Larkin's contributions to fisheries science. The lecture I presented in November 2015 coincided with an announcement that the Institute of Fisheries that Peter Larkin founded in the 1960s would be restructured as the “Institute for Oceans and Fisheries” with an emphasis on fisheries and oceans issues important to British Columbia as well as the rest of the world. I decided to look back at research issues that Peter Larkin thought would be important for Pacific salmon (Oncorhynchus spp.) in the future and see what has happened as a way of identifying the complexity that the Institute for Oceans and Fisheries in particular and the science community in general will face. I chose five themes from Peter Larkin's talks: 1 understanding marine survival, 2 ocean carrying capacity, 3 aquaculture, 4 climate, Pacific salmon and climate change and 5 informing the public, and then added my opinion about research priorities for the future. Peter Larkin recognized the future relevance of these examples, but he probably could not have imagined how these and related issues will challenge his renamed institute and the rest of the research community over the next 50 years.     

Variations in migration behaviour and mortality of Atlantic salmon smolts in four different hydroelectric facilities

Migration behaviour, route selection and mortality of Atlantic salmon, Salmo salar L., smolts were studied at four different hydroelectric facilities in the River Mustionjoki, Finland, in May 2017. Radio-tagged smolts were released upstream of the power stations and tracked by stationary antenna-receiver systems and hand-held receivers. Tracking revealed a general tendency of smolts to move downstream with the main flow, but also variable behaviour and mortality related to diverse conditions characteristic of each power station. Average migration delay at the power stations ranged between 13.8 and 101.1 h (median: 1.7–61.5 h). Estimated mortality ranges were 0%–50% in the forebays, 4%–64% in the power stations and 2–30%/km during river migration after passage of the dam. This study provided essential information on behaviour and mortality in relation to local conditions at each power station required for successful application of fish bypass systems in a salmon restoration project.     

Standardising multi-laboratory microsatellite data in Pacific salmon: an historical view of the future

Abstract –  For at least 15 years, multiple Pacific Rim Laboratories have cooperated to standardise the collection of Pacific salmon genetic data. For species such as Chinook salmon and chum salmon, allozyme electrophoretic data sets now include hundreds of populations sampled over multiple years throughout the north Pacific. More recently, microsatellite DNA markers have emerged as a new cornerstone of Pacific salmon genetic research. The allozyme experience provides at least two important lessons regarding shared, standardised databases. First, interlaboratory standardisation is sufficiently costly and time consuming that little progress is typically made in the absence of specific fishery management and conservation needs; thus immediate needs will direct future standardisation. Secondly, justified or not, there are significant concerns regarding intellectual propriety and other perceived privileges associated with unpublished genetic data that are shared among laboratories. This article describes challenges to genetic standardisation relative to new research goals, along with specific suggestions for meeting those challenges.     

From Atlantic to Pacific: Price links in the US wild and farmed salmon market

Abstract

In 1990, the US International Trade Commission stated that Atlantic and Pacific salmon species did not share a substitute relationship in any of the product forms. This result is contrary to economic demand studies that show a substitute relationship for Atlantic and Pacific salmon species. Time‐series results reported in this paper are consistent with the earlier demand studies and show evidence of an equilibrium price system that includes Atlantic, chinook and coho salmon species for the US market. For these three salmon species a substitute relationship cannot be rejected. However, we observe only weak price links across the three different species in the different US regional markets.     

Fish stress and mortality can be predicted using reflex impairment

Fish stress and mortality can be significant problems in both capture and culture operations. In addition to inexpensive and real-time metrics, ones that are simple to use are also desirable for measuring fish stress and predicting mortality. Current methods to define stress rely on expensive, laboratory-based measurements of changes in fish pathology such as disease, necropsy and histology, in physiology such as plasma cortisol, lactate, glucose and ions and in complex behaviour determined from swimming, feeding and predator evasion. All of these methods are often not rigorously linked to fitness outcomes. An alternative is to observe reflex impairment as a direct sign of stress which can be easily and rapidly measured in free swimming or restrained fish responding to peripheral stimuli such as gravity, light, sound and touch. Reflex impairment is correlated with stress and mortality outcomes, eliminating the need for prolonged holding or monitoring of fish. A few examples of reflexes that may be impaired include orientation, startle responses, fin erection, body flex upon restraint, operculum and mouth clamping or gaping, gag response and vestibular–ocular response. Reflex impairment combines the effects of stressors and their interactions and is not dependent on fish size, motivation states and acclimation which make it a consistent sign of stress across a wide range of stressor types and fish ages. Use of reflex impairment to measure stress and predict mortality would significantly improve monitoring of fish health and welfare in many types of field operations such as commercial and recreational fishing, aquaculture, live transport, stock enhancement and tagging.     

Competition between Asian pink salmon (Oncorhynchus gorbuscha) and Alaskan sockeye salmon (O. nerka) in the North Pacific Ocean

The importance of interspecific competition as a mechanism regulating population abundance in offshore marine communities is largely unknown. We evaluated offshore competition between Asian pink salmon and Bristol Bay (Alaska) sockeye salmon, which intermingle in the North Pacific Ocean and Bering Sea, using the unique biennial abundance cycle of Asian pink salmon from 1955 to 2000. Sockeye salmon growth during the second and third growing seasons at sea, as determined by scale measurements, declined significantly in odd‐numbered years, corresponding to years when Asian pink salmon are most abundant. Bristol Bay sockeye salmon do not interact with Asian pink salmon during their first summer and fall seasons and no difference in first year scale growth was detected. The interaction with odd‐year pink salmon led to significantly smaller size at age of adult sockeye salmon, especially among younger female salmon. Examination of sockeye salmon smolt to adult survival rates during 1977–97 indicated that smolts entering the ocean during even‐numbered years and interacting with abundant odd‐year pink salmon during the following year experienced 26% (age‐2 smolt) to 45% (age‐1 smolt) lower survival compared with smolts migrating during odd‐numbered years. Adult sockeye salmon returning to Bristol Bay from even‐year smolt migrations were 22% less abundant (reduced by 5.9 million fish per year) compared with returns from odd‐year migrations. The greatest reduction in adult returns occurred among adults spending 2 compared with 3 years at sea. Our new evidence for interspecific competition highlights the need for multispecies, international management of salmon production, including salmon released from hatcheries into the ocean.     

Spatial correlation patterns in coastal environmental variables and survival rates of salmon in the north-east Pacific Ocean

We examined spatial correlations for three coastal variables [upwelling index, sea surface temperature (SST), and sea surface salinity (SSS)] that might affect juvenile salmon ( Oncorhynchus spp.) during their early marine life. Observed correlation patterns in environmental variables were compared with those in survival rates of pink ( O. gorbuscha ), chum ( O. keta ), and sockeye ( O. nerka ) salmon stocks to help identify appropriate variables to include in models of salmon productivity. Both the upwelling index and coastal SST were characterized by strong positive correlations at short distances, which declined slowly with distance in the winter months, but much more rapidly in the summer. The SSS had much weaker and more variable correlations at all distances throughout the year. The distance at which stations were no longer correlated (spatial decorrelation scale) was largest for the upwelling index (> 1000 km), intermediate for SST (400–800 km in summer), and shortest for SSS (< 400 km). Survival rate indices of salmon showed moderate positive correlations among adjacent stocks that decreased to zero at larger distances. Spatial decorrelation scales ranged from approximately 500 km for sockeye salmon to approximately 1000 km for chum salmon. We conclude that variability in the coastal marine environment during summer, as well as variability in salmon survival rates, are dominated by regional scale variability of several hundred to 1000 km. The correlation scale for SST in the summer most closely matched the observed correlation scales for survival rates of salmon, suggesting that regional-scale variations in coastal SST can help explain the observed regional-scale covariation in survival rates among salmon stocks.     

Comparison of histopathology caused by Vibrio anguillarum and Vibrio ordalii in three species of Pacific salmon*

Abstract. The histopathology associated with naturally acquired vibriosis in chum salmon, Oncorhynchus keta (Walbaum), fingerlings caused by Vibrio anguillarum was compared with that caused by infection with Vibrio ordalii. Pathogenesis of the two forms was found to be different. Bacteraemia caused by V. anguillarum occurred in the early stages with pronounced histopathological changes in blood, loose connective tissue, kidney, spleen, gills and posterior gastrointestinal tract. Bacterial cells appeared uniformly dispersed throughout the affected tissues but were most abundant in the blood. With V. ordalii, bacteraemia developed only in late stages of the disease and the concentration of bacterial cells per ml of blood was less than in the V. anguillarum infection by a factor of 10²–10³. Tissues with most pronounced changes were skeletal and cardiac muscle, anterior and posterior gastrointestinal tract and the gills. Vibrio ordalii observed in the tissues was not evenly dispersed but was present within tissue as colonies or aggregates of cells. The differences in pathology observed in naturally infected chum salmon were produced experimentally with each pathogen by waterborne exposure of chum; coho, Oncorhynchus kisutch (Walbaum); and chinook salmon, Oncorhynchus tshawytscha (Walbaum). Severe decreases in circulating leucocytes accompanied bacteraemia caused by either bacterial species.