Overwintering management on upland pasture causes shifts in an abundance of denitrifying microbial communities, their activity and N2O-reducing ability

Pasture soils used for cattle overwintering may represent significant sources of N₂O emissions from soils. Therefore, the long-term effect of cattle overwintering on the abundance and activity of a denitrifying community was explored. The study was performed at a cattle overwintering area in South Bohemia (Czech Republic), where three sites differing in the degree of animal impact were selected: severely impacted (SI) and moderately impacted (MI), as well as a control site with no impact (NI). N₂O flux measurement and soil sampling were performed in spring and fall of 2005. The activity was measured in terms of potential denitrification activity. Bacterial nirK, nirS and nosZ genes were used as functional markers of the denitrifying communities; abundance was analyzed using a real-time PCR assay. Surprisingly, in situ N₂O emissions were the highest in spring at MI and significantly differed from those at SI and NI, while in autumn, rates of emissions generally decreased. In contrast potential denitrification rates were highest at SI, followed by MI, and the lowest at NI. An overall significant shift in N₂O/N₂ molar ratio was shown in cattle impacted sites. The highest abundance of all genes measured at both sampling times was found at site SI, whereas at site MI increased numbers were observed only in spring. Our results indicate a strong influence of cattle on the abundance as well as the activity of microbes involved in denitrification.     

Can a mixed stand of N2-fixing and non-fixing plants restrict N2O emissions with increasing CO2 concentration?

Initial effects of elevated atmospheric CO₂ concentration on N₂O fluxes and biomass production of timothy/red clover were studied in the laboratory. The experimental design consisted of two levels of atmospheric CO₂ (ca. 360 and 720 μmol CO₂ mol⁻¹) and two N fertilisation levels (5 and 10 g N m⁻²). There was a total of 36 mesocosms comprising sandy loam soil, which were equally distributed in four thermo-controlled greenhouses. In two of the greenhouses, the CO₂ concentration was kept at ambient concentration and in the other two at doubled concentration. Forage was harvested and the plants fertilised three times during the basic experiment, followed by harvest, a fertilisation with the double amount of nitrogen and rise of water level. Under elevated CO₂, harvestable and total aboveground dry biomass production of a mixed Trifolium/Phleum stand was increased at both N treatments compared to ambient CO₂. The N₂O flux rates under ambient CO₂ were significantly higher at both N treatments during the early growth of mixed Phleum/Trifolium mesocosms compared to the N₂O flux rate under elevated CO₂. However, when the conditions were favourable for denitrification at the end of the experiment, i.e. N availability and soil moisture were high enough, the elevated CO₂ concentration enhanced the N₂O efflux.     

太湖地区长期不同施肥水稻土N2和CO2固定细菌群落结构的特征与差异

土壤N2固定细菌和CO2固定细菌是土壤碳氮循环重要的微生物群落,不同施肥下土壤有机碳积累与这两类微生物群落结构及活性的关系有助于了解施肥对农田碳氮循环的影响特点.本文研究了太湖地区自1987年开始的水稻土长期施肥试验,选取不施肥(NF)、氮磷钾(NPK)肥(CF)、NPK肥与猪粪配施(CFM)和NPK肥与秸秆还田配施(CFS)小区,采集(0-20 cm)表层样本,以nifH和cbbLR基因分别作为N2和CO2固定细菌的指示基因,用PCR-DGGE和荧光定量PCR的方法研究二者的群落结构,并用平板菌落计数法测定土壤自生固氮细菌数量和用乙炔还原法测定土壤固氮酶活性.结果表明,与CF处理相比,CF、CFM和CFS处理下的自生固氮细菌数量分别提高了58％、66％和106％;CF、CFM和CFS处理下的nifH基因丰度分别提高了213％、1079％和344％.CF与CFM处理的土壤固氮酶活性显著高于NF和CFS处理.因此,施肥提高了cbbLR基因的多样性.与NF处理相比,CF、CFM和CFS处理下的cbbLR基因丰度分别提高了465％、1827％和758％.相关性分析表明,土壤自生固氮菌数量与土壤有机碳含量呈显著正相关,cbbLR和nifH基因丰度均与归一化的土壤养分呈极其显著正相关.研究表明,有机/无机肥配施下土壤养分平衡对维持N2和CO2固定细菌较高的丰度具有重要的作用.     

大田条件下草本及灌木豆科植物固氮能力的评价

Natural ¹⁵N abundance method was used in this study to investigate the N₂-fixing capacities of several herbaceous and shrub legumes by a field experiment. For herbaceous legumes, the results were in consistent with those obtained by a pot experiment. Crotalaria mucronata Desv. had a higher N₂-fixing capacity than Vigna sinensis (L.) Savi. For shrub legumes, N₂-fixing capacity under field condition was slightly different from that in pot experiment. These results demonstrated that the natural ¹⁵N abundance method was applicable to evaluating N₂-fixing capacities of herbaceous and shrub legumes, and that pot experiment was suitable for evaluating the N₂-fixing capacities of not only herbaceous legumes but also shrub legumes. Leguminous N₂-fixing plants differed in response to phosphorus fertilization. Phosphorus fertilizer application greatly increased the percentage of nitrogen derived from air (% N dfa) and total amount of N₂ fixed by Lespedeza formosa (Vog.) Koehne (Jiangxi). Phosphorus fertilizer showed no significant effect on the N₂-fixing percentage of Cajanus cajan (L.) Millsp. but increased its total biomass, thus increasing the total amount of N₂ fixed.     

Seasonal changes in the spatial structures of N2O, CO2, and CH4 fluxes from Acacia mangium plantation soils in Indonesia

We evaluated the spatial structures of nitrous oxide (N₂O), carbon dioxide (CO₂), and methane (CH₄) fluxes in an Acacia mangium plantation stand in Sumatra, Indonesia, in drier (August) and wetter (March) seasons. A 60 × 100-m plot was established in an A. mangium plantation that included different topographical elements of the upper plateau, lower plateau, upper slope and foot slope. The plot was divided into 10 × 10-m grids and gas fluxes and soil properties were measured at 77 grid points at 10-m intervals within the plot. Spatial structures of the gas fluxes and soil properties were identified using geostatistical analyses. Averaged N₂O and CO₂ fluxes in the wetter season (1.85 mg N m⁻² d⁻¹ and 4.29 g C m⁻² d⁻¹, respectively) were significantly higher than those in the drier season (0.55 mg N m⁻² d⁻¹ and 2.73 g C m⁻² d⁻¹, respectively) and averaged CH₄ uptake rates in the drier season (−0.62 mg C m⁻² d⁻¹) were higher than those in the wetter season (−0.24 mg C m⁻² d⁻¹). These values of N₂O fluxes in A. mangium soils were higher than those reported for natural forest soils in Sumatra, while CO₂ and CH₄ fluxes were in the range of fluxes reported for natural forest soils. Seasonal differences in these gas fluxes appears to be controlled by soil water content and substrate availability due to differing precipitation and mineralization of litter between seasons. N₂O fluxes had strong spatial dependence with a range of about 18 m in both the drier and wetter seasons. Topography was associated with the N₂O fluxes in the wetter season with higher and lower fluxes on the foot slope and on the upper plateau, respectively, via controlling the anaerobic-aerobic conditions in the soils. In the drier season, however, we could not find obvious topographic influences on the spatial patterns of N₂O fluxes and they may have depended on litter amount distribution. CO₂ fluxes had no spatial dependence in both seasons, but the topographic influence was significant in the drier season with lowest fluxes on the foot slope, while there was no significant difference between topographic positions in the wetter season. The distributions of litter amount and soil organic matter were possibly associated with CO₂ fluxes through their effects on microbial activities and fine root distribution in this A. mangium plantation.     

Isolation and identification of oxamyl-degrading bacteria from UK agricultural soils

Bacteria capable of utilising oxamyl as the sole carbon source were isolated from seven different agricultural soils that had previously demonstrated enhanced oxamyl degradation in a soil incubation study. Partial sequencing and alignment of the 16S rRNA gene showed little diversity amongst isolates, with 26 of the 27 isolates demonstrating similarity to the genus Aminobacter. The most common species isolated was Aminobacter aminovorans, while a number of the isolates demonstrated an equal degree of similarity to the species Aminobacter niigataensis and Chelatobacter heintzii. One isolate was identified as Mesorhizobium sp. This is the first time that organisms involved in the degradation of oxamyl have been isolated and identified.     

Interactions between residue placement and earthworm ecological strategy affect aggregate turnover and N2O dynamics in agricultural soil

Previous laboratory studies using epigeic and anecic earthworms have shown that earthworm activity can considerably increase nitrous oxide (N₂O) emissions from crop residues in soils. However, the universality of this effect across earthworm functional groups and its underlying mechanisms remain unclear. The aims of this study were (i) to determine whether earthworms with an endogeic strategy also affect N₂O emissions; (ii) to quantify possible interactions with epigeic earthworms; and (iii) to link these effects to earthworm-induced differences in selected soil properties. We initiated a 90-day ¹⁵N-tracer mesocosm study with the endogeic earthworm species Aporrectodea caliginosa (Savigny) and the epigeic species Lumbricus rubellus (Hoffmeister). ¹⁵N-labeled radish (Raphanus sativus cv. Adagio L.) residue was placed on top or incorporated into the loamy (Fluvaquent) soil. When residue was incorporated, only A. caliginosa significantly (p < 0.01) increased cumulative N₂O emissions from 1350 to 2223 μg N₂O-N kg⁻¹ soil, with a corresponding increase in the turnover rate of macroaggregates. When residue was applied on top, L. rubellus significantly (p < 0.001) increased emissions from 524 to 929 μg N₂O-N kg⁻¹, and a significant (p < 0.05) interaction between the two earthworm species increased emissions to 1397 μg N₂O-N kg⁻¹. These effects coincided with an 84% increase in incorporation of residue ¹⁵N into the microaggregate fraction by A. caliginosa (p = 0.003) and an 85% increase in incorporation into the macroaggregate fraction by L. rubellus (p = 0.018). Cumulative CO₂ fluxes were only significantly increased by earthworm activity (from 473.9 to 593.6 mg CO₂-C kg⁻¹ soil; p = 0.037) in the presence of L. rubellus when residue was applied on top. We conclude that earthworm-induced N₂O emissions reflect earthworm feeding strategies: epigeic earthworms can increase N₂O emissions when residue is applied on top; endogeic earthworms when residue is incorporated into the soil by humans (tillage) or by other earthworm species. The effects of residue placement and earthworm addition are accompanied by changes in aggregate and SOM turnover, possibly controlling carbon, nitrogen and oxygen availability and therefore denitrification. Our results contribute to understanding the important but intricate relations between (functional) soil biodiversity and the soil greenhouse gas balance. Further research should focus on elucidating the links between the observed changes in soil aggregation and controls on denitrification, including the microbial community.     

农田土壤主要温室气体(CO2、CH4、N2O)的源/汇强度及其温室效应研究进展

气候变化是当今全球面临的重大挑战, 人类社会生产生活引起的温室气体排放是全球气候变暖的主要原因。大气中CO₂、CH₄ 和N₂O 是最重要的温室气体, 对温室效应的贡献率占了近80%。据估计, 大气中每年有5%~20%的CO₂、15%~30%的CH₄、80%~90%的N₂O 来源于土壤, 而农田土壤是温室气体的重要排放源。本文重点阐述了农田土壤温室气体产生、排放或吸收机理及其影响因素, 指出土地利用方式和农业生产力水平等人为控制因素通过影响土壤和作物生长条件来影响农田土壤温室气体产生与排放或吸收。所以, 我们可以从人类活动对农田生态系统的影响着手, 通过改善农业生产方式和作物生长条件来探索温室气体减排措施, 达到固碳/氮增汇的目的。对国内外关于农田温室气体排放的源/汇强度及其综合温室效应评估的最新研究进展进行了综述, 指出正确估算与评价农田土壤温室气体的源/汇强度及其对大气中主要温室气体浓度变化的贡献, 有助于为温室气体减排以及减少气候变化预测的不确定性提供理论依据。     

农业土壤排放氧化亚氮的影响因素分析

氧化亚氮（N₂O）是重要的温室气体之一。本文从施肥、灌溉、耕作、种植作物及土地用途改变等方面论述了农业活动对土壤排放氧化亚氮的影响，并总结了减排措施。     

Size, symbiotic effectiveness and genetic diversity of field pea rhizobia (Rhizobium leguminosarum bv. viciae) populations in South Australian soils

Field pea (Pisum sativum L.) is widely grown in South Australia (SA), often without inoculation with commercial rhizobia. To establish if symbiotic factors are limiting the growth of field pea we examined the size, symbiotic effectiveness and diversity of populations of field pea rhizobia (Rhizobium leguminosarum bv. viciae) that have become naturalised in South Australian soils and nodulate many pea crops. Most probable number plant infection tests on 33 soils showed that R. l. bv. viciae populations ranged from undetectable (six soils) to 32×10³ rhizobia g⁻¹ of dry soil. Twenty-four of the 33 soils contained more than 100 rhizobia g⁻¹ soil. Three of the six soils in which no R. l. bv. viciae were detected had not grown a host legume (field pea, faba bean, vetch or lentil). For soils that had grown a host legume, there was no correlation between the size of R. l. bv. viciae populations and either the time since a host legume had been grown or any measured soil factor (pH, inorganic N and organic C). In glasshouse experiments, inoculation of the field pea cultivar Parafield with the commercial Rhizobium strain SU303 resulted in a highly effective symbiosis. The SU303 treatment produced as much shoot dry weight as the mineral N treatment and more than 2.9 times the shoot dry weight of the uninoculated treatment. Twenty-two of the 33 naturalised populations of rhizobia (applied to pea plants as soil suspensions) produced prompt and abundant nodulation. These symbioses were generally effective at N₂ fixation, with shoot dry weight ranging from 98% (soil 21) down to 61% (soil 30) of the SU303 treatment, the least effective population of rhizobia still producing nearly double the growth of the uninoculated treatment. Low shoot dry weights resulting from most of the remaining soil treatments were associated with delayed or erratic nodulation caused by low numbers of rhizobia. Random amplified polymorphic DNA (RAPD) polymerase chain reaction (PCR) fingerprinting of 70 rhizobial isolates recovered from five of the 33 soils (14 isolates from each soil) showed that naturalised populations were composed of multiple (5-9) strain types. There was little evidence of strain dominance, with a single strain type occupying more than 30% of trap host nodules in only two of the five populations. Cluster analysis of RAPD PCR banding patterns showed that strain types in naturalised populations were not closely related to the current commercial inoculant strain for field pea (SU303, ≥75% dissimilarity), six previous field pea inoculant strains (≥55% dissimilarity) or a former commercial inoculant strain for faba bean (WSM1274, ≥66% dissimilarity). Two of the most closely related strain types (≤15% dissimilarity) were found at widely separate locations in SA and may have potential as commercial inoculant strains. Given the size and diversity of the naturalised pea rhizobia populations in SA soils and their relative effectiveness, it is unlikely that inoculation with a commercial strain of rhizobia will improve N₂ fixation in field pea crops, unless the number of rhizobia in the soil is very low or absent (e.g. where a legume host has not been previously grown and for three soils from western Eyre Peninsula). The general effectiveness of the pea rhizobia populations also indicates that reduced N₂ fixation is unlikely to be the major cause of the declining field pea yields observed in recent times.     

Modelling variability in N2O emissions from fertilized agricultural fields

Estimates of long-term landscape-scale N₂O emissions for greenhouse gas inventories are complicated by large temporal and spatial variability. Much of this variability is likely caused by topographic effects on surface and subsurface water flows. We hypothesized that this variability could be explained as degassing events during anaerobic soil conditions and during transitions from anaerobic to aerobic soil conditions as controlled by precipitation and subsequent water redistribution in complex landscapes. We simulated degassing events in the ecosystem model ecosys run in three-dimensional mode to simulate a fertilized agricultural field with topographic variation derived from a digital terrain map. N₂O emissions modelled from two areas within the field that had received 15.5 and 9.9 g N m⁻² as urea in May 1998 were compared with those measured by micrometeorological flux towers during June and July 1998. Modelled N₂O emissions during 1998 accounted for 2.3 and 2.0% of urea N applied at 15.5 and 9.9 g N m⁻², respectively. Degassing events in the model coincided with a key N₂O emission event measured in the field during several days after a rainfall in mid-June. During this event, modelled and measured surface fluxes rose rapidly to exceed 1 mg N m⁻² h⁻¹ for 2-3 d before declining. Emissions modelled concurrently at different topographic positions within the landscape during the emission event had coefficients of variation that varied over time between 30 and 180%. Much of the spatial variability in modelled emissions was attributed to temporal differences in the progression of emission events at different landscape positions caused by lateral water movement. The magnitude of temporal and spatial variability in N₂O emissions suggests that aggregation of flux measurements to regional scales should be based upon sub-daily measurements at representative landscape positions, rather than upon less frequent measurements at individual sites as currently done. The use of three-dimensional ecosystem models with input from digital terrain maps may provide a means for such aggregation to be conducted.     

CH4 oxidation and emissions of CH4 and N2O from Lolium perenne swards under elevated atmospheric CO2

Emissions of N₂O and CH₄ and CH₄ oxidation rates were measured from Lolium perenne swards in a short-term study under ambient (36 Pa) and elevated (60 Pa) atmospheric CO₂ at the Free Air Carbon dioxide Enrichment experiment, Eschikon, Switzerland. Elevated pCO₂ increased (P<0.05) N₂O emissions from high N fertilised (11.2 g N m⁻²) swards by 69%, but had no significant effect on net emissions of CH₄. Application of ¹³C-CH₄ (11 μl l⁻¹; 11 at.% excess ¹³C) to closed chamber headspaces in microplots enabled determination of rates of ¹³C-CH₄ oxidation even when net CH₄ fluxes from main plots were positive. We found a significant interaction between fertiliser application rate and atmospheric pCO₂ on ¹³C-CH₄ oxidation rates that was attributed to differences in gross nitrification rates and C and N availability. CH₄ oxidation was slower and thought to be temporarily inhibited in the high N ambient pCO₂ sward. The most rapid CH₄ oxidation of 14.6 μg ¹³C-CH₄ m⁻² h⁻¹ was measured in the high fertilised elevated pCO₂ sward, and we concluded that either elevated pCO₂ had a stimulatory effect on CH₄ oxidation or inhibition of oxidation following fertiliser application was lowered under elevated pCO₂. Application of ¹⁴NH₄¹⁵NO₃ and ¹⁵NH₄¹⁵NO₃ (10 at.% excess ¹⁵N) to different replicates enabled determination of the respective contributions of nitrification and denitrification to N₂O emissions. Inhibition of CH₄ oxidation in the high fertilised ambient pCO₂ sward, due to competition between NH₃ and CH₄ for methane monooxygenase enzymes or toxic effects of NH₂OH or NO₂⁻ produced during nitrification, was hypothesised to increase gross nitrification (12.0 mg N kg dry soil⁻¹) and N₂O emissions during nitrification (327 mg ¹⁵N-N₂O m⁻² over 11 d). Our results indicate that increasing atmospheric concentrations of CO₂ may increase emissions of N₂O by denitrification, lower nitrification rates and either increase or decrease the ability of soil to act as a sink for atmospheric CH₄ depending on fertiliser management.     

土壤团聚体N_2O释放与反硝化微生物丰度和组成的关系

不同粒径团聚体的物理化学和生物学特性差异可能影响N2O的产生与释放,但目前有关团聚体N2O释放的微生物学机制少有研究。本研究从菜地土壤中分筛出粒径为1 mm、2~4 mm和4~8 mm的团聚体并开展培养试验,通过实时荧光定量PCR(Quantitative Polymerase Chain Reaction,q PCR)与末端限制性片段长度多态性分析(Terminal-Restricted Fragment Length Polymorphism,T-RFLP)技术的结合,研究了不同粒径团聚体反硝化微生物群落数量与组成的变化规律及其与N2O释放的相互关系。结果表明,不同粒径团聚体N2O释放速率表现为:粒径小于1 mm团聚体2~4 mm团聚体4~8 mm团聚体;硝酸还原酶基因(nar G)和氧化亚氮还原酶基因(nos Z)的丰度也表现为小粒径团聚体最高,随团聚体粒径增加而显著下降。然而,不同粒径团聚体间含nar G和nos Z基因的群落组成并没表现出显著差异。因此,不同粒径团聚体N2O释放速率差异与反硝化功能微生物丰度密切相关,而与它们的组成没有显著相关性。     

No-till only increases N2O emissions in poorly-aerated soils

Denitrification rates are often greater in no-till than in tilled soils and net soil-surface greenhouse gas emissions could be increased by enhanced soil N₂O emissions following adoption of no-till. The objective of this study was to summarize published experimental results to assess whether the response of soil N₂O fluxes to the adoption of no-till is influenced by soil aeration. A total of 25 field studies presenting direct comparisons between conventional tillage and no-till (approximately 45 site-years of data) were reviewed and grouped according to soil aeration status estimated using drainage class and precipitation during the growing season. The summary showed that no-till generally increased N₂O emissions in poorly-aerated soils but was neutral in soils with good and medium aeration. On average, soil N₂O emissions under no-till were 0.06 kg N ha⁻¹ lower, 0.12 kg N ha⁻¹ higher and 2.00 kg N ha⁻¹ higher than under tilled soils with good, medium and poor aeration, respectively. Our results therefore suggest that the impact of no-till on N₂O emissions is small in well-aerated soils but most often positive in soils where aeration is reduced by conditions or properties restricting drainage. Considering typical soil C gains following adoption of no-till, we conclude that increased N₂O losses may result in a negative greenhouse gas balance for many poorly-drained fine-textured agricultural soils under no-till located in regions with a humid climate.     

N natural abundance of biologically fixed N2 in soybean is controlled more by the Bradyrhizobium strain than by the variety of the host plant

The ¹⁵N natural abundance technique is one of those most easily applied ‘on farm’ to evaluate the contribution of biological N₂ fixation (BNF) to legume crops. When proportional BNF inputs are high, the accuracy of this technique is highly dependent on an accurate estimate of the ¹⁵N abundance of the N derived from N₂ fixation (the ‘B’ value). The objective of this study was to determine the influence of soybean variety on ‘B’ value. Plants of five soybean varieties were inoculated separately with two Bradyrhizobium strains (one Bradyrhizobium japonicum and one Bradyrhizobium elkanii) grown in pots of soil virtually free of bradyrhizobia capable of nodulating soybean. The proportion of N derived from BNF (%Ndfa) was estimated in separate pots where a small quantity of enriched ¹⁵N ammonium sulphate was added. The %Ndfa was then used with the ¹⁵N natural abundance data of the nodulated soybean and non-N₂-fixing reference plants, to determine the ‘B’ value for each soybean variety/Bradyrhizobium association. The varieties nodulated by the B. japonicum strain showed significantly greater N content and %Ndfa than those nodulated by the B. elkanii strain, and in all cases the ‘B’ value of the shoot tissue (‘B_s’) was higher. The differences in ‘B_s’ values between varieties nodulated by the same Bradyrhizobium strain were insignificant, indicating that this parameter is influenced much more by the Bradyrhizobium strain than by the variety of the host plant.     

N2O and NO production in various Chinese agricultural soils by nitrification

Eleven types of agricultural soils were collected from Chinese uplands and paddy fields to compare their N₂O and NO production by nitrification under identical laboratory conditions. Before starting the assays, all air-dried soils were preincubated for 4 weeks at 25 °C and 40% WFPS (water-filled pore space). The nitrification activities of soils were determined by adding (NH₄)₂SO₄ (200 mg N kg⁻¹ soil) and incubating for 3 weeks at 25 °C and 60% WFPS. The net nitrification rates obtained fitted one of two types of models, depending on the soil pH: a zero-order reaction model for acidic soils and one neutral soil (Group 0); or a first-order reaction model for one neutral soil and alkaline soils (Group 1). The results suggest that pH is the most important factor in determining the kinetics of soil nitrification from ammonium. In the Group 1 soils, initial emissions (i.e. during the first week) of N₂O and NO were 82.6 and 83.6%, respectively, of the total emissions during 3 weeks of incubation; in the Group 0 soils, initial emissions of N₂O and NO were 54.7 and 59.9%, respectively, of the total emissions. The net nitrification rate in the first week and second-third weeks were highly correlated with the initial and subsequent emissions (i.e. during the second and third weeks), respectively, of N₂O and NO. The average percentages of emitted (N₂O+NO)-N relative to net nitrification N in initial and subsequent periods were 2.76 and 0.59 for Group 0, and 1.47 and 0.44 for the Group 1, respectively. The initial and subsequent emission ratios of NO/N₂O from Group 0 (acidic) soils were 3.77 and 2.52 times, respectively, higher than those from Group 1 soils (P<0.05).     

Spatial structures of N2O, CO2, and CH4 fluxes from Acacia mangium plantation soils during a relatively dry season in Indonesia

We investigated spatial structures of N₂O, CO₂, and CH₄ fluxes during a relatively dry season in an Acacia mangium plantation stand in Sumatra, Indonesia. The fluxes and soil properties were measured at 1-m intervals in a 1 × 30-m plot (62 grid points) and at 10-m intervals in a 40 × 100-m plot (55 grid points) at different topographical positions of the upper plateau, slope, and valley bottom in the plantation. Spatial structures of each gas flux and soil property were identified using geostatistical analysis. The means (±SD) of N₂O, CO₂, and CH₄ fluxes in the 10-m grids were 0.54 (±0.33) mg N m⁻² d⁻¹, 2.81 (±0.71) g C m⁻² d⁻¹, and −0.84 (±0.33) mg C m⁻² d⁻¹, respectively. This suggests that A. mangium soils function as a larger source of N₂O than natural forest soils in the adjacent province on Sumatra during the relatively dry season, while CO₂ and CH₄ emissions from the A. mangium soils were less than or consistent with those in the natural forest soils. Multiple spatial dependence of N₂O fluxes within 3.2 m (1-m grids) and 35.0 m (10-m grids), and CO₂ fluxes within 1.8 m (1-m grids) and over 65 m (10-m grids) was detected. From the relationship among N₂O and CO₂ gas fluxes, soil properties, and topographic elements, we suggest that the multiple spatial structures of N₂O and CO₂ fluxes are mainly associated with soil resources such as readily mineralizable carbon and nitrogen in a relatively dry season. The soil resource distributions were probably controlled by the meso- and microtopography. Meanwhile, CH₄ fluxes were spatially independent in the A. mangium soils, and the water-filled pore space appeared to mainly control the spatial distribution of these fluxes.     

Fluxes of CO2, CH4 and N2O from drained organic soils in deciduous forests

We examined net greenhouse gas exchange at the soil surface in deciduous forests on soils with high organic contents. Fluxes of CO₂, CH₄ and N₂O were measured using dark static chambers for two consecutive years in three different forest types; (i) a drained and medium productivity site dominated by birch, (ii) a drained and highly productive site dominated by alder and (iii) an undrained and highly productive site dominated by alder. Although the drained sites had shallow mean groundwater tables (15 and 18 cm, respectively) their average annual rates of forest floor CO₂ release were almost twice as high compared to the undrained site (1.9±0.4 and 1.7±0.3, compared to 1.0±0.2 kg CO₂ m⁻² yr⁻¹). The average annual CH₄ emission was almost 10 times larger at the undrained site (7.6±3.1 compared to 0.9±0.5 g CH₄ m⁻² yr⁻¹ for the two drained sites). The average annual N₂O emissions at the undrained site (0.1±0.05 g N₂O m⁻² yr⁻¹) were lower than at the drained sites, and the emissions were almost five times higher at the drained alder site than at the drained birch site (0.9±0.35 compared to 0.2±0.11 g N₂O m⁻² yr⁻¹). The temporal variation in forest floor CO₂ release could be explained to a large extent by differences in groundwater table and air temperature, but little of the variation in the CH₄ and N₂O fluxes could be explained by these variables. The measured soil variables were only significant to explain for the within-site spatial variation in CH₄ and N₂O fluxes at the undrained swamp, and dark forest floor CO₂ release was not explained by these variables at any site. The between-site spatial variation was attributed to variations in drainage, groundwater level position, productivity and tree species for all three gases. The results indicate that N₂O emissions are of greater importance for the net greenhouse gas exchange at deciduous drained forest sites than at coniferous drained forest sites.     

Natural abundance δN and δC of DNA extracted from soil

We report the first simultaneous measurements of δ¹⁵N and δ¹³C of DNA extracted from surface soils. The isotopic composition of DNA differed significantly among nine different soils. The δ¹³C and δ¹⁵N of DNA was correlated with δ¹³C and δ¹⁵N of soil, respectively, suggesting that the isotopic composition of DNA is strongly influenced by the isotopic composition of soil organic matter. However, in all samples DNA was enriched in ¹³C relative to soil, indicating microorganisms fractionated C during assimilation or preferentially used ¹³C enriched substrates. Enrichment of DNA in ¹⁵N relative to soil was not consistently observed, but there were significant differences between δ¹⁵N of DNA and δ¹⁵N of soil for three different sites, suggesting microorganisms are fractionating N or preferentially using N substrates at different rates across these contrasting ecosystems. There was a strong linear correlation between δ¹⁵N of DNA and δ¹⁵N of the microbial biomass, which indicated DNA was depleted in ¹⁵N relative to the microbial biomass by approximately 3.4‰. Our results show that accurate and precise isotopic measurements of C and N in DNA extracted from the soil are feasible, and that these analyses may provide powerful tools for elucidating C and N cycling processes through soil microorganisms.