Shifts in ascomycete community of bisolarizated substrate infested with Fusarium oxysporum f. sp. conglutinans and F. oxysporum f. sp. basilici by PCR-DGGE

Substrate samples were artificially infested with Fusarium oxysporum f. sp. conglutinans (FOC) and F. oxysporum f. sp. basilici (FOB) in order to evaluate the shift in fungal population by using culture dependent and culture independent methods. Solarization was carried out with transparent polyethylene film during a summer period on a greenhouse located in Northern Italy, in combination or not with Brassica carinata defatted seed meals and/or compost. Biosolarization treatment was carried out in a growth chamber by heating the substrate for 7 and 14 days at optimal (55–52 °C for 6 h, 50–48 °C for 8 h and 47–45 °C for 10 h/day) and sub-optimal (50–48 °C for 20 h, 45–43 °C for 8 h and 40–38 °C for 10 h/day) temperatures. Plate counts and polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) analyses were performed to evaluate the effect of biosolarization on the microbial population. The abundance of FOC and FOB were reduced as a consequence of biosolarization approach, while bacterial population (total aerobic mesophilic bacteria and Pseudomonas spp.) were higher compared to control samples during the experiment. PCR-DGGE fingerprints of the ascomycete community obtained from DNA directly extracted from infested substrate samples showed that the use of organic amendments increased the similarity of the fungal population.     

Impact of agriculture,forest and cloud feedback on the surface energy budget in BOREAS

We explore the impact of agriculture, forest and cloud feedback on the surface energy budget using data obtained using a research aircraft, mesonet towers and model data. The forest has an order of magnitude larger roughness length, a lower albedo, a much smaller seasonal cycle in surface Bowen ratio (BR) and a weak mid-summer maximum of CO₂ uptake compared to agricultural areas, which have much smaller BR and much higher mid-summer CO₂ uptake, but a net CO₂ release and much reduced evaporation in spring and fall. Higher surface temperatures and the higher albedo over agricultural land reduce R_net near local noon in the warm season by about 50 W m⁻² in comparison with the adjacent boreal forest. The annual averaged R_net, derived from 2 years of tower data, is 14 W m⁻² less over grass sites than over forest sites. A reanalysis time-series for the BOREAS southern study area shows the coupling on daily timescales between the surface energy partition, the mean boundary layer depth, the cloud field and the long-wave and short-wave radiation fields. The albedo of the cloud field, the cloud short-wave forcing at the surface, varies over the range 0.1–0.8 with decreasing surface BR, and plays a major role in the surface energy budget. We estimate that this cloud feedback may increase albedo by 0.13 and reduce R_net by 25 W m⁻² in summer over agricultural land.     

Multiple measurements constrain estimates of net carbon exchange by a Eucalyptus forest

Net ecosystem exchange of carbon (F_NEE) was estimated for a temperate broadleaf, evergreen eucalypt forest ecosystem at Tumbarumba in south-eastern Australia to investigate the processes controlling forest carbon sinks and their response to climate. Measurements at a range of temporal and spatial scales were used to make three different estimates of F_NEE based on: (1) the difference between fluxes of carbon input by photosynthesis and output by autotrophic plus heterotrophic respiration, (2) changes over time in the carbon pools in the above- and below-ground biomass, soil and litter, and (3) micrometeorological flux measurements that provide a continuous estimate of the net exchange. A rigorous comparison of aggregated component fluxes and the net eddy fluxes within a flux tower source area was achieved based on an inventory of the site and a detailed sampling strategy. Measurements replicated in space and time provided mean values, confidence limits and patterns of variation of carbon pools and fluxes that allowed comparisons within known limits of uncertainty. As a result of comparisons between nighttime eddy flux and chamber measurements of respiration, a revised micrometeorological method was developed for estimating nighttime carbon flux using flux tower measurements. Uncertainty in the final estimate of F_NEE was reduced through mutual constraints of each of these measurement approaches. F_NEE for the period October 2001–September 2002, with average rainfall, was an uptake of 6.7 (5.1–8.3) tC ha^?1 yr^?1 estimated from component fluxes, and 5.4 (3.0–7.5) tC ha^?1 yr^?1 estimated from the revised eddy flux method. Biomass increment was 4.5 (3.7–5.4) tC ha^?1 yr^?1 and the remaining 0.9–2.2 tC ha^?1 yr^?1 could represent a carbon sink in the soil and litter pools or lie within the confidence limits of the measured fluxes. F_NEE was reduced to ?0.1 to 2.4 tC ha^?1 yr^?1 during a period of drought and insect disturbance in October 2002–September 2003, with biomass increment being the main component reduced. The forest is a large carbon sink compared with other forest ecosystems, but this is subject to high-annual variability in response to climate variability and disturbance.     

How do environmental factors and different fertilizer strategies affect soil CO2 emission and carbon sequestration in the upland soils of southern China?

Upland soils have been identified as a major CO₂ source induced by human activities, such as fertilizer applications. The aim of this study is to identify the characteristics of soil CO₂ emission and carbon balance in cropland ecosystems after continuous fertilizer applications over decades. The measurements of soil surface CO₂ fluxes throughout the years of 2009 and 2010 were carried out based on a fertilization experiment (from 1990) in a double cropping system rotated with winter wheat (Triticum aestivum L.) and maize (Zea mays L.) in upland soil in southern China. Four treatments were chosen from the experiment for this study: no-fertilizer application (SR), nitrogen–phosphorus–potassium chemical fertilizers (NPK), NPK plus pig manure (NPKM) and pig manure alone (M). Results showed that the mean value of soil CO₂ fluxes from 08:00 to 10:00 am could represent its daily mean value in summer period (June–August) and that from 09:00 am to 12:00 pm for the rest season of a year. Soil temperature and moisture combined together could explain 70–83% of variations of CO₂ emission. Annual cumulative soil CO₂ fluxes in the treatments with manure applications (8.2 ± 0.8 and 11.0 ± 1.2 t C ha⁻¹ in 2009, and 7.9 ± 0.9 and 11.1 ± 1.2 t C ha⁻¹ in 2010 in NPKM and M, respectively) were significantly higher than those in the treatments with non-manure addition (2.5 ± 0.2 and 3.4 ± 0.2 t C ha⁻¹ in 2009, and 2.1 ± 0.2 and 3.7 ± 0.3 t C ha⁻¹ in 2010 in SR and NPK, respectively). However, the treatments with manure applications represented a carbon sink in the soil (carbon output/input ratio < 1.0), which demonstrated potential for carbon sequestration.     

Soil organic matter assessment in natural regrowth,Pueraria phaseoloides and Mucuna pruriens fallow

Biological and chemical components of soil fertility were quantified under three different fallow types and related to soil quality of an Ultisol in southern Cameroon at the end of a 9-month fallow. Soil organic matter (SOM), soil exchangeable Ca²⁺, Mg²⁺ and K⁺ and available P concentrations, effective cation exchange capacity (ECEC) and, soil acidity in the 0–10 and 10–20 cm layers were evaluated under: natural regrowth mainly composed of Chromolaena odorata and the legume cover crops velvet bean (Mucuna pruriens var. utilis) and kudzu (Pueraria phaseoloides). SOM quality was assessed by C mineralisation during a 4-week incubation at 28°C in the laboratory. In addition, particulate organic matter (POM), the most active part of SOM, was fractionated by wet sieving into coarse (4000–2000 μm), medium (2000–250 μm) and fine (250–53 μm) particle size classes and analysed for C and N contents. Under Mucuna, Ca²⁺, K⁺ and P concentrations, ECEC and soil pH were higher and C mineralisation was lower than under natural regrowth and Pueraria in 0–10 cm depth. Soil under natural regrowth had a higher C mineralisation in 0–10 cm indicating more labile SOM than in Pueraria and Mucuna fallow. There was no difference in weight of total POM, for any of the fractions between the three fallow types. However, both leguminous fallow species increased POM quality through a higher N content. Compared to natural regrowth, Pueraria increased N content in coarse POM by 36% in the 0–10 cm layer and by 19% (coarse POM) and 35% (medium POM) in the 10–20 cm layer. Mucuna increased N content in the 0–10 cm layer by 12% (coarse POM), and by 19% (fine POM), compared to natural regrowth. According to the differences in nutrient concentrations, soil acidity and the biological stability of SOM, the three fallow types ranked: Mucuna≥Pueraria>natural regrowth. However, in terms of POM quality the ranking was: Pueraria>Mucuna>natural regrowth.     

Earthworm-induced N2O emissions in a sandy soil with surface-applied crop residues

Earlier research with endogeic and epigeic earthworm species in loamy arable soil has shown that both earthworm groups can increase nitrous oxide (N₂O) emissions, provided that crop residue placement matches the feeding strategy of the earthworm ecological group(s). However, it is not yet clear whether these effects also occur in sandy soils which typically contain less soil organic matter and have low soil aggregation levels. Here, we aimed to quantify N₂O emissions as affected by endogeic and/or epigeic earthworm species, and to relate changes in N₂O emissions to earthworm-induced changes in soil properties in a sandy soil. A 90 day mesocosm study was conducted with sandy soil and ¹⁵N-labeled radish (Raphanus sativus cv. Adagio L.) residue applied on top. Treatments included: (i) no earthworm addition, (ii) addition of the endogeic species Aporrectodea caliginosa (Savigny), (iii) addition of the epigeic species Lumbricus rubellus (Hoffmeister), and (iv) both species combined. An additional treatment was included without earthworms and with residue manually incorporated into the soil. L. rubellus significantly increased cumulative N₂O emissions from 228 to 859 μg N₂O–N kg^?1 (F_1,12 = 83.12, P < 0.001), whereas A. caliginosa did not affect N₂O emissions. In contrast to earlier studies in loamy soil, no positive interaction between both species with regard to N₂O emissions was found. This was probably related to high competition for organic resources in the relatively poor soil and a low potential for stable soil aggregate formation (and associated anaerobic microsites) by endogeic worms in sandy soil. ¹⁵N isotope analysis revealed that the activity of L. rubellus significantly increased (F_1,12 = 6.20, P = 0.028) the recovery of ¹⁵N in the 250–8000 μm size fraction, indicating incorporation of crop residues into the mineral soil. When residues were manually incorporated, N₂O emissions were significantly (P < 0.008) lower (509 μg N₂O–N kg^?1) than when incorporated by L. rubellus. The high N₂O emissions in the presence of L. rubellus, when compared to manual mixing, suggest a stimulation of microbial activity and/or changes in the microbial community composition. Insights on the earthworm effects on N₂O emission from such soils are discussed.     

The effect of organic matter on the structure of soils of different land uses

In this study, the soil structure of two soils (Haplic Chernozem and Eutric Fluvisol) of different land uses (forest, meadow, urban and agro-ecosystem – consisted of four crop rotations) in Slovakia was compared. The soil aggregate stability was determined with a dependence on the chemical composition of plant residues. The quantity and quality of the organic matter was assessed through the parameters of the C and N in size fractions of dry-sieved and water-resistant aggregates. The soil structure of the forest ecosystem was evaluated as the best of all of forms of land use. Differences in the soil structure under the grass vegetation of a meadow (natural conditions) and urban ecosystem were also recorded. The agro-ecosystem was characterised by a higher portion (55.95%) of the most valuable (agronomically) water-resistant aggregate size fraction of 0.5–3 mm. Values of the carbon management index showed that the larger water-resistant aggregates were, the greater were the changes in the organic matter (r = ?0.680, P < 0.05). In addition, a smaller content of dry-sieved aggregates of the 3–5 mm size fraction was observed with higher contents of soil organic carbon (SOC) (r = ?0.728, P < 0.05) and labile carbon (C_L) (r = ?0.760, P < 0.05); there were also greater changes in the soil organic matter and vice versa, higher contents of SOC (r = 0.744, P < 0.05) and C_L (r = 0.806, P < 0.05) greater contents of dry-sieved aggregates of size fraction 0.5–1 mm. The soil structure of agro-ecosystem was superior at a higher content of cellulose (r = ?0.712, P < 0.05) in the plant residues. The higher content of cellulose and hemicellulose in the plant residue of a previous crop was reflected in a smaller C_L content in the water-resistant aggregates (r = ?0.984, P < 0.05). A correlation was observed between a high content of lignin in the plant residue and a smaller SOC content in the water-resistant aggregates (r = ?0.967, P < 0.05). Lastly, a higher content of proteins in the plant residues (r = 0.744, P < 0.05) supported a greater content of dry-sieved aggregates of the 0.5–1 mm size fraction.     

Sclerotium rolfsii dynamics in soil as affected by crop sequences

Crop rotation has been used for the management of soilborne diseases for centuries, but has not often been planned based on scientific knowledge. Our objective was to generate information on Sclerotium rolfsii dynamics under different crop or intercrop activities, and design and test a research approach where simple experiments and the use of models are combined to explore crop sequences that minimize Southern blight incidence.The effect of seventeen green manure (GM) amendments on sclerotia dynamics was analyzed in greenhouse and field plot experiments during two years. The relative densities of viable sclerotia 90 days after winter GM (WGM) incorporation were generally lower than after summer GM (SGM) incorporation, with average recovery values of 60% and 61% for WGM in the field, 66% and 43% for WGM in the greenhouse, and 162% to 91% for SGM in the greenhouse, in 2009 and 2010, respectively. Sclerotia survival on day d after GM amendment was described by the model S_f = S_i × exp(−b × d), relating initial (S_i) and final (S_f) sclerotia densities. Relative decay rates of the sclerotia (b) in SGM amended soil were largest for alfalfa (0.0077 ± 0.0031 day⁻¹) and sudangrass (0.0072 ± 0.0030 day⁻¹). In WGM amended soil, the largest b values were for oat (0.0096 ± 0.0024 day⁻¹), wheat (0.0090 ± 0.0024 day⁻¹) and alfalfa (0.0087 ± 0.0023 day⁻¹).The effect of three cropping sequences (sweet pepper–fallow, sweet pepper–black oat and sweet pepper–onion) on sclerotia dynamics was analyzed in microplot experiments, and the data were used to calibrate the model P_f = P_i/(α + βP_i), relating initial (P_i) and final (P_f) sclerotia densities. Median values for the relative rate of population increase at low P_i (1/α, dimension less) and the asymptote (1/β, number of viable sclerotia in 100 g of dry soil) were 8.22 and 4.17 for black oat (BO), 1.13 and 8.64 for onion (O), and 6.26 and 17.93 for sweet pepper (SwP).By concatenating the two models, sclerotia population dynamics under several crop sequences were simulated. At steady state, the sequence SwP–O–Fallow–BO resulted in the lowest long-term sclerotia density (7.09 sclerotia/100 g soil), and SwP–Fallow in the highest (17.89 sclerotia/100 g soil). The developed methodology facilitates the selection of a limited number of rotation options to be tested in farmers’ fields.     

Measurements of ozone deposition to a potato canopy

Potatoes are an important staple crop, grown in many parts of the world. Although ozone deposition to many vegetation types has been measured in the field, no data have been reported for potatoes. Such measurements, including the latent-heat flux, were made over a fully grown potato field in central Scotland during the summer of 2006, covering a 4-week period just after rainfall and then dry, sunny weather. The magnitude of the flux was typical of many canopies showing the expected diurnal cycles. Although the bulk-canopy stomatal conductance declined as the field dried out (～300 mmol-O₃ m^?2 s^?1 to ～70 mmol-O₃ m^?2 s^?1), the total ozone flux did not follow the same trend, indicating that non-stomatal deposition was significant. Over a dry surface non-stomatal resistance (R_ns) was 270–450 s m^?1, while over a wet surface R_ns was ～50% smaller and both decreased with increasing surface temperature and friction velocity. From the variation with relative humidity (RH) it is suggested that three processes occur on leaf surfaces: on a very dry surface ozone is removed by thermal decomposition, possibly enhanced by photolytic reactions in the daytime and so R_ns decreases as temperature increases; at 50–70% RH a thin film of liquid blocks the “dry” process and resistance increases; above 60–70% RH sufficient surface water is present for aqueous reactions to remove ozone and resistance decreases.     

The temperature dependence of dicyandiamide (DCD) degradation in soils: A data synthesis

Dicyandiamide (DCD, C₂H₄N₄) is a nitrification inhibitor that has been studied for more than 80 years. However, there are few papers that have examined the use of DCD on dairy farms where cattle graze pasture and where urine is the primary form of nitrogen (N) deposited onto soils. After DCD was applied (10 kg DCD ha^?1) with bovine urine (700–1200 kg N ha^?1) to five soils throughout New Zealand, the reduction in direct nitrous oxide (N₂O) emissions was significant and remarkably consistent (71 ± 8%, average ± standard error). The application of DCD to these soils occurred in autumn and winter; daily average soil temperature (T) was reported but these data were not further analysed. Perusal of the literature suggested no consensus on the temperature dependence of DCD degradation in soils. Based on published data from controlled-environment studies of soils sampled in four countries, we quantified the relation between T and the time for DCD concentration in soils to decline to half its application value (t_½) as t_½ (T) = 168e^?0.084T with parameter standard errors of ±16 d and ±0.011 d^?1, respectively (n = 16). For example, at 5 °C a 1 °C increase in T reduced t_½ from 110 to 101 d whereas at 25 °C the reduction was 20–19 d. Analysing T data from the New Zealand trials using our t_½ (T) function, over 43–89 d when direct N₂O emissions from treated plots became indistinguishable from the controls, the estimated percentage of applied DCD remaining in the soil averaged 43 ± 10%. These calculations suggested the apparently remaining DCD was ineffective with respect to direct N₂O emissions. In the absence of measurements, explanations for this interpretation included vertical displacement of the DCD and sorption onto organic matter in soils. The consistent DCD efficacy from these trials corresponded with T generally <10 °C, so it is suggested as an application criteria for the reduction of direct N₂O emissions from pastoral soils subjected to urine excretion by grazing cattle.     

Accumulation of As,Pb, Zn,Cd and Cu and arbuscular mycorrhizal status in populations of Cynodon dactylon grown on metal-contaminated soils

Metal(loid) accumulation and arbuscular mycorrhizal (AM) status of the dominant plant species, Cynodon dactylon, growing at four multi-metal(loid)s-contaminated sites and an uncontaminated site of China were investigated. Up to 94.7 As mg kg^?1, 417 Pb mg kg^?1, 498 Zn mg kg^?1, 5.8 Cd mg kg^?1 and 27.7 Cu mg kg^?1 in shoots of C. dactylon were recorded. The plant was colonized consistently by AM fungi (33.0–65.5%) at both uncontaminated site and metal-contaminated sites. Based on morphological characteristics, fourteen species of AM fungi were identified in the rhizosphere of C. dactylon, with one belonging to the genus of Acaulospora and the other thirteen belonging to the genus of Glomus. Glomus etunicatum was the most common species associated with C. dactylon growing at metal-contaminated sites. Spore abundance in the rhizosphere of C. dactylon growing at the metal-contaminated soils (22–82 spores per 25 g soil) was significantly lower than that of the uncontaminated soils (371 spores per 25 g soil). However, AM fungal species diversity in the metal-contaminated soils was significantly higher than that in the uncontaminated soils. This is the first report of AM status in the rhizosphere of C. dactylon, the dominant plant survival in metal-contaminated soils. The investigation also suggests that phytorestoration of metal-contaminated sites might be facilitated using the appropriate plant with the aid of tolerant AM fungi.     

Soil–atmosphere greenhouse gas exchange in a cool,temperate Eucalyptus delegatensis forest in south-eastern Australia

Forests are the largest C sink (vegetation and soil) in the terrestrial biosphere and may additionally provide an important soil methane (CH₄) sink, whilst producing little nitrous oxide (N₂O) when nutrients are tightly cycled. In this study, we determine the magnitude and spatial variation of soil–atmosphere N₂O, CH₄ and CO₂ exchange in a Eucalyptus delegatensis forest in New South Wales, Australia, and investigate how the magnitude of the fluxes depends on the presence of N₂-fixing tree species (Acacia dealbata), the proximity of creeks, and changing environmental conditions. Soil trace gas exchange was measured along replicated transects and in forest plots with and without presence of A. dealbata using static manual chambers and an automated trace gas measurement system for 2 weeks next to an eddy covariance tower measuring net ecosystem CO₂ exchange. CH₄ was taken up by the forest soil (?51.8 μg CH₄-C m^?2 h^?1) and was significantly correlated with relative saturation (S_r) of the soil. The soil within creek lines was a net CH₄ source (up to 33.5 μg CH₄-C m^?2 h^?1), whereas the wider forest soil was a CH₄ sink regardless of distance from the creek line. Soil N₂O emissions were small (<3.3 μg N₂O-N m^?2 h^?1) throughout the 2-week period, despite major rain and snowfall. Soil N₂O emissions only correlated with soil and air temperature. The presence of A. dealbata in the understorey had no influence on the magnitude of CH₄ uptake, N₂O emission or soil N parameters. N₂O production increased with increasing soil moisture (up to 50% S_r) in laboratory incubations and gross nitrification was negative or negligible as measured through ¹⁵N isotope pool dilution.The small N₂O emissions are probably due to the limited capacity for nitrification in this late successional forest soil with C:N ratios >20. Soil–atmosphere exchange of CO₂ was several orders of magnitude greater (88.8 mg CO₂-C m^?2 h^?1) than CH₄ and N₂O, and represented 43% of total ecosystem respiration. The forest was a net greenhouse gas sink (126.22 kg CO₂-equivalents ha^?1 d^?1) during the 2-week measurement period, of which soil CH₄ uptake contributed only 0.3% and N₂O emissions offset only 0.3%.     

Factors affecting transfer of degradative plasmids between bacteria in soils

Horizontal gene transfer is useful for enhancing bioremediation through gene bioaugmentation. However, factors affecting transfer of degradative plasmids have not been systematically addressed. To this end, plasmid transfer experiments were performed using a TOL-like plasmid carrying the gene encoding for catechol 2,3-dioxygenase (C23O) between two soil bacteria under different conditions. Transfer frequency increased with air temperature in the range of 10–35 °C and reached 6 × 10⁻⁴ transconjugants per donor cell at 35 °C. The transfer frequency detected at soil depth 5–10 cm was significantly higher (p < 0.05) compared with other depths. Addition of 5–75% LB in the microbial inoculum promoted plasmid transfer frequencies. Addition of phenol to the experimental system resulted in significantly higher transfer frequency (p < 0.05) compared with no addition. Transfer frequency heat-moisture in loam was significantly higher (p < 0.05) than in other soils. The highest transfer frequency was found in the experiment containing tomato seedlings, with up to about 1.3 × 10⁻³ transconjugants per donor cell. Corn and wheat seedlings also led to significantly higher transfer frequencies (p < 0.05) compared with no plants. Furthermore, C23O activities of transconjugants formed under different conditions were measured, as a surrogate measure of the activity of transconjugant. Transfer temperature, soil and plant types had a minor influence on activities of transconjugants. Topsoil (0–5 cm) transconjugants expressed C23O more efficiently under normal incubation condition, but less efficiently when soils incubated with excessive LB medium concentrations, and in the absence of phenol in soil. These results suggested that transfer temperature, soil depth, dilutions of LB broth, phenol content, and soil and plant types had important effects on transfer of the TOL-like plasmid in soil, and some factors also affected activities of transconjugants.     

Climatic influences on active fractions of soil organic matter

Biologically active fractions of soil organic matter are important in understanding decomposition potential of organic materials, nutrient cycling dynamics, and biophysical manipulation of soil structure. We evaluated the quantitative relationships among potential C and net N mineralization, soil microbial biomass C (SMBC), and soil organic C (SOC) under four contrasting climatic conditions. Mean SOC values were 28±11 mg g⁻¹ (n=24) in a frigid–dry region (Alberta/British Columbia), 25±5 mg g⁻¹ (n=12) in a frigid–wet region (Maine), 11±4 mg g⁻¹ (n=117) in a thermic–dry region (Texas), and 12±5 mg g⁻¹ (n=131) in a thermic–wet region (Georgia). Higher mean annual temperature resulted in consistently greater basal soil respiration (1.7 vs 0.8 mg CO₂–C g⁻¹ SOC d⁻¹ in the thermic compared with the frigid regions, P<0.001), greater net N mineralization (2.8 vs 1.3 mg inorganic N g⁻¹ SOC 24 d⁻¹, P<0.001), and greater SMBC (53 vs 21 mg SMBC g⁻¹ SOC, P<0.001). Specific respiratory activity of SMBC was, however, consistently lower in the thermic than in the frigid regions (29 vs 34 mg CO₂–C g⁻¹ SMBC d⁻¹, P<0.01). Higher mean annual precipitation resulted in consistently lower basal soil respiration (1.1 vs 1.3 mg CO₂–C g⁻¹ SOC d⁻¹ in the wet compared with the dry regions, P<0.01) and lower SMBC (31 vs 43 mg SMBC g⁻¹ SOC, P<0.001), but had inconsistent effects on net N mineralization that depended upon temperature regime. Specific respiratory activity of SMBC was consistently greater in the wet than the dry regions (≈33 vs 29 mg CO₂–C g⁻¹ SMBC d⁻¹, P<0.01). Although the thermic regions were not able to retain as high a level of SOC as the frigid regions, due likely to high annual decomposition rates, biologically active soil fractions were as high per mass of soil and even 2–3-times greater per unit of SOC in the thermic compared with the frigid regions. These results suggest that macroclimate has a large impact on the portion of soil organic matter that is potentially active, but a relatively small impact on the specific respiratory activity of SMBC.     

Nitrogen mineralization in the ruderal sub-alpine communities in Mount Uludağ, Turkey

Nitrogen mineralization and nitrification in the soil of sub-alpine ruderal community of Mount Uludağ, Bursa, Turkey was measured for 1 year, under field conditions with Verbascum olympicum and Rumex olympicus being the dominant pioneer species under dry and wet sites, respectively. Seasonal fluctuations were observed in N mineralization and nitrification. The net N mineralization and nitrification were high in early summer and winter, due to high moisture. The annual net N mineralization rate (for the 0–15 cm soil layer) was higher under R. olympicus (188 kg N ha⁻¹ yr⁻¹) than under V. olympicum (96 kg N ha⁻¹ yr⁻¹). A significant positive correlation between net N mineralization and soil organic C (r² = 0.166), total N (r² = 0.141) and water content (r² = 0.211) was found. Our results indicate that N mineralization rate is high in soils of ruderal communities on disturbed sites and varies with dominant species and, a difference in net N mineralization rate can be attributed to organic C, total N and moisture content of soils.     

Evapotranspiration and water use efficiency in different-aged Pacific Northwest Douglas-fir stands

We used the eddy-covariance technique to measure evapotranspiration (E) and gross primary production (GPP) in a chronosequence of three coastal Douglas-fir (Pseudotsuga menziesii) stands (7, 19 and 58 years old in 2007, hereafter referred to as HDF00, HDF88 and DF49, respectively) since 1998. Here, we focus on the controls on canopy conductance (g_c), E, GPP and water use efficiency (WUE) and the effect of interannual climate variability at the intermediate-aged stand (DF49) and then analyze the effects of stand age following clearcut harvesting on these characteristics. Daytime dry-foliage Priestley–Taylor α and g_c at DF49 were 0.4–0.8 and 2–6 mm s^?1, respectively, and were linearly correlated (R² = 0.65). Low values of α and g_c at DF49 as well at the other two stands suggested stomatal limitation to transpiration. Monthly E, however, showed strong positive linear correlations to monthly net radiation (R² = 0.94), air temperature (R² = 0.77), and daytime vapour pressure deficit (R² = 0.76). During July–September, monthly E (mm) was linearly correlated to monthly mean soil water content (θ, m³ m^?3) in the 0–60 cm layer (E = 453θ ? 21, R² = 0.69), and GPP was similarly affected. Annual E and GPP of DF49 for the period 1998–2007 varied from 370 to 430 mm and from 1950 to 2390 g C m^?2, respectively. After clearcut harvesting, E dropped to about 70% of that for DF49 while ecosystem evapotranspiration was fully recovered when stand age was ～12 years. This contrasted to GPP, which varied hyperbolically with stand age. Monthly GPP showed a strong positive linear relationship with E irrespective of the stand age. While annual WUE of HDF00 and HDF88 varied with age from 0.5 to 4.1 g C m^?2 kg^?1 and from 2.8 to 4.4 g C m^?2 kg^?1, respectively, it was quite conservative at ～5.3 g C m^?2 kg^?1 for DF49. N-fertilization had little first-year response on E and WUE. This study not only provides important results for a more detailed validation of process-based models but also helps in predicting the influences of climate change and forest management on water vapour and CO₂ fluxes in Douglas-fir forests.     

Nitrous oxide production in turfgrass systems: Effects of soil properties and grass clipping recycling

Soil N₂O emissions can affect global environments because N₂O is a potent greenhouse gas and ozone depletion substance. In the context of global warming, there is increasing concern over the emissions of N₂O from turfgrass systems. It is possible that management practices could be tailored to reduce emissions, but this would require a better understanding of factors controlling N₂O production. In the present study we evaluated the spatial variability of soil N₂O production and its correlation with soil physical, chemical and microbial properties. The impacts of grass clipping addition on soil N₂O production were also examined. Soil samples were collected from a chronosequence of three golf courses (10, 30, and 100-year-old) and incubated for 60 days at either 60% or 90% water filled-pore space (WFPS) with or without the addition of grass clippings or wheat straw. Both soil N₂O flux and soil inorganic N were measured periodically throughout the incubation. For unamended soils, cumulative soil N₂O production during the incubation ranged from 75 to 972 ng N g⁻¹ soil at 60% WFPS and from 76 to 8842 ng N g⁻¹ soil at 90% WFPS. Among all the soil physical, chemical and microbial properties examined, soil N₂O production showed the largest spatial variability with the coefficient of variation ~110% and 207% for 60% and 90% WFPS, respectively. At 60% WFPS, soil N₂O production was positively correlated with soil clay fraction (Pearson's r = 0.91, P < 0.01) and soil NH₄⁺–N (Pearson's r = 0.82, P < 0.01). At 90% WFPS, however, soil N₂O production appeared to be positively related to total soil C and N, but negatively related to soil pH. Addition of grass clippings and wheat straw did not consistently affect soil N₂O production across moisture treatments. Soil N₂O production at 60% WFPS was enhanced by the addition of grass clippings and unaffected by wheat straw (P < 0.05). In contrast, soil N₂O production at 90% WFPS was inhibited by the addition of wheat straw and little influenced by glass clippings (P < 0.05), except for soil samples with >2.5% organic C. Net N mineralization in soil samples with >2.5% organic C was similar between the two moisture regimes, suggesting that O₂ availability was greater than expected from 90% WFPS. Nonetheless, small and moderate changes in the percentage of clay fraction, soil organic matter content, and soil pH were found to be associated with large variations in soil N₂O production. Our study suggested that managing soil acidity via liming could substantially control soil N₂O production in turfgrass systems.     

Effect of wetting intensity on soil GHG fluxes and microbial biomass under a temperate forest floor during dry season

The increasing frequency of periodic droughts followed by heavy rainfalls is expected for this current century, but little is known about the effects of wetting intensity on the in situ biogenic greenhouse gas (GHG) fluxes of forest soils and soil microbial biomass. To gain new insights into the underlying mechanisms responsible for wetting-induced GHG fluxes in situ, rain simulation field experiments during a natural prolonged drought period were done under a temperate forest in northeast China. The intensity of rainfall-induced CO₂ pulses increased from 0.84 to 2.08 g CO₂–C m^? 2 d^? 1 with the intensity of wetting up to ca. 80% water-filled pore space, which coincided with an increase in soil microbial biomass and with a decrease in soil labile organic C following wetting. Methane uptake rates decreased from 1.76 to 0.87 mg CH₄–C m^? 2 d^? 1 with the intensity of wetting. Wetting dry forest floor increased N₂O fluxes from 6.2 to 25.9 μg N₂O–N m^? 2 d^? 1, but there was no significant difference between all experimental wetted plots. The rainfall-induced N₂O pulses with increasing wetting intensity were opposite to that of the CO₂ pulses, showing a maximum response at the lowest wetting intensity. An analysis of the temperature sensitivity of GHG fluxes indicated that temperature had an increased effect on the in situ CO₂ flux and CH₄ uptake, respectively, under wetted and dry conditions. The global warming potential of GHG fluxes and Q₁₀ value of the temperature response of CO₂ fluxes increased linearly with wetting intensity. The results indicate that the rainfall-induced soil CO₂ pulse is mainly due to enhanced microbial consumption on substrates and highlight the complex nature of belowground C-cycling responses to climate change in northeast China forests that normally experience periodic droughts followed by heavy rainfalls over the year.     

Moisture pulses,trace gas emissions and soil C and N in cheatgrass and native grass-dominated sagebrush-steppe in Wyoming,USA

Effects of large-scale weed invasion on the nature and magnitude of moisture-pulse-driven soil processes in semiarid ecosystems are not clearly understood. The objective of this study was to monitor carbon dioxide (CO₂) and nitrous oxide (N₂O) emissions and changes in soil carbon (C) and nitrogen (N) following the application of a water pulse in Wyoming big sagebrush (Artemisia tridentata ssp. wyomingensis) communities dominated by the exotic annual grass cheatgrass (Bromus tectorum) and by the native perennial grass western wheatgrass (Pascopyrum smithii). Sampling locations were established in shrub interspaces dominated by B. tectorum and P. smithi and beneath shrub canopies adjacent to interspaces dominated by B. tectorum and P. smithi, where no grass was present. Soils were classified as fine-loamy, mixed, Borollic Haplargids. Soil samples (0–10 cm) and air samples were collected at 0, 4, 8, 24, 49, 72, and 216 h following additions of 25.4 mm of water. Soil samples were analyzed for dissolved organic carbon (DOC), microbial biomass carbon (MBC), extractable ammonia (NH₄⁺), extractable nitrate (NO₃^?), and dissolved organic nitrogen (DON). Grass species induced differences in soil nitrification, N₂O and CO₂ emissions, and the quantity and timing of labile C available to microbial populations responding to increased moisture availability. In the first 8-h phase after wetting P. smithii soils had the greatest CO₂ emissions compared to other soils but B. tectorum soils had the greatest N₂O emissions and the greatest increases in CO₂ emissions relative to before wetting. Microbial biomass C in B. tectorum interspace soils increased rapidly but the response was short-lived despite sufficient water availability. After the first 8 h of soil response to wetting, the observed MBC declines in B. tectorum interspace coincided with disproportional DOC and DON concentration increases. Similar DOC and DON increases were also observed in B. tectorum soils beneath shrub canopy. In contrast, DOC and DON concentrations in P. smithii soils remained unaffected by soil wetting and small MBC increases observed during the first 8-h phase did not decline as rapidly as in B. tectorum interspace soils. In conclusion, summer drying-wetting cycles that occur frequently in areas invaded by B. tectorum can accelerate rates of nitrification and C mineralization, and contribute significantly to trace gas emissions from sagebrush-steppe grasslands. With frequent summer rainfall events, the negative consequences B. tectorum presence in the ecosystem can be significant.     

Persistence,survival, vertical dispersion,and horizontal spread of the biocontrol agent,Penicillium oxalicum strain 212, in different soil types

The potential adverse effects of a biological control agent can be assessed from the knowledge on its environmental fate and behaviour. This study focuses on environmental fate and behaviour of Penicillium oxalicum Currie and Thom strain 212 (PO212), a promising biocontrol agent, after its application to three different soil substrates under different crop conditions in terms of the persistence, survival, vertical dispersion, and horizontal spread. Two different PO212 conidial formulations, one without any additives (F1) and one with additives (F2), were applied to the seedbeds of tomato plants seven days before their transplanting into three soil types: sterilized peat in an experimental glasshouse and the sandy loam and the loamy sand soils in two commercial orchards. The size of the Penicillium spp. population in the substrate samples was quantified using the classical microbiological method of counting of number of colony-forming units on a semi-selective culture medium. The size of PO212 biomass in the samples was quantified by a specific quantitative real-time polymerase chain reaction. We found that PO212 had a very limited vertical dispersion and horizontal spread in the three soil substrates that were tested in the study. PO212 persisted in the natural soil substrates for at least one year at very low levels (0.45–61.2 ng dried PO212 biomass/g dry soil or 2.71–367.2 ng fresh PO212 biomass/g dry soil). Treatment influenced the horizontal spread of the PO212 biomass in the sterilized peat and sandy loam soils. We did not find significant increases in the size of indigenous Penicillium spp. population (10²–10³ CFU/g dry soil) in the three soil substrates following application of the F1 or F2 conidial formulations. In the sandy loam soil of the orchard in the VO2009 field trial the Penicillium spp. population decreased at increasing depths. Although PO212 persists in the soil after its application, it does not proliferate. We conclude that PO212 is an effective and safe biocontrol agent to control soil-borne pathogens.