Diurnal stream habitat use of juvenile Atlantic salmon, brown trout and rainbow trout in winter

Abstract  The diurnal winter habitat of three species of juvenile salmonids was examined in a tributary of Skaneateles Lake, NY to compare habitat differences among species and to determine if species/age classes were selecting specific habitats. A total of 792 observations were made on the depth, velocity, substrate and cover (amount and type) used by sympatric subyearling Atlantic salmon, subyearling brown trout and subyearling and yearling rainbow trout. Subyearling Atlantic salmon occurred in shallower areas with faster velocities and less cover than the other salmonid groups. Subyearling salmon was also the only group associated with substrate of a size larger than the average size substrate in the study reach during both winters. Subyearling brown trout exhibited a preference for vegetative cover. Compared with available habitat, yearling rainbow trout were the most selective in their habitat use. All salmonid groups were associated with more substrate cover in 2002 under high flow conditions. Differences in the winter habitat use of these salmonid groups have important management implications in terms of both habitat protection and habitat enhancement.     

Ecology and movement of juvenile salmonids in beaver-influenced and beaver-free tributaries in the Trøndelag province of Norway

There is concern that expanding beaver (Castor fiber) populations will negatively impact the important economic, recreational and ecological resources of Atlantic salmon (Salmo salar) and sea trout (Salmo trutta) populations in Europe. We studied how beaver dams influenced habitat, food resources, growth and movement of juvenile Atlantic salmon and trout on three paired beaver-dammed and beaver-free (control) tributaries of important salmon rivers in central Norway. Lotic reaches of beaver-dammed and control sites were similar in habitat and benthic prey abundance, and ponds were small (<3,000 m²). Though few juvenile salmonids were detected in ponds, trout and salmon were present in habitats below and above ponds (comprising 9%–31% and 0%–57% of the fish collected respectively). Trout dominated control sites (79%–99%), but the greatest proportion of Atlantic salmon were upstream of beaver ponds (0%–57%). Growth rates were highly variable, with no differences in growth between lotic reaches of beaver-dammed and control sites. The condition and densities of juvenile salmon and trout were similar in lotic reaches of beaver-dammed and control sites, though one beaver-dammed site with fine sediment had very few juvenile salmonids. Beaver dams did not block the movement of juvenile salmonids or their ability to use upstream habitats. However, the degree of repeated movements and the overall proportion of fish moving varied between beaver-dammed and control sites. The small scale of habitat alteration and the fact that fish were able to move past dams makes it unlikely that beaver dams negatively impact the juvenile stage of salmon or trout populations.     

Introduced northern pike consumption of salmonids in Southcentral Alaska

The impacts of introduced northern pike (Esox lucius) on salmonid populations have attracted much attention because salmonids are popular subsistence, sport and commercial fish. Concern over the predatory effects of introduced pike on salmonids is especially high in Southcentral Alaska, where pike were illegally introduced to the Susitna River basin in the 1950s. We used pike abundance, growth, and diet estimates and bioenergetics models to characterise the realised and potential consumptive impacts that introduced pike (age 2 and older) have on salmonids in Alexander Creek, a tributary to the Susitna River. We found that juvenile salmonids were the dominant prey item in pike diets and that pike could consume up to 1.10 metric tons (realised consumption) and 1.66 metric tons (potential consumption) of juvenile salmonids in a summer. Age 3–4 pike had the highest per capita consumption of juvenile salmonids, and age 2 and age 3–4 pike had the highest overall consumption of juvenile salmonid biomass. Using historical data on Chinook salmon and pike potential consumption of juvenile salmonids, we found that pike consumption of juvenile salmonids may lead to collapsed salmon stocks in Alexander Creek. Taken together, our results indicate that pike consume a substantial biomass of juvenile salmonids in Alexander Creek and that coexistence of pike and salmon is unlikely without management actions to reduce or eliminate introduced pike.     

Effects of aquatic weed removal on freshwater pearl mussels and juvenile salmonids in the River Spey,Scotland

• 1. Experiments were carried out in the River Spey, Scotland to determine the effects of aquatic weed (Ranunculus spp.) removal on populations of freshwater pearl mussels (Margaritifera margaritifera) and juvenile salmonids (Salmo salar, Salmo trutta) and their river‐bed habitats.
• 2. Physical removal of Ranunculus had no significant impact either on pearl mussels or on salmon and trout fry.
• 3. Regrowth of Ranunculus post‐removal was negligible for one year, indicating that hand‐removal may be an effective control measure.
• 4. Ranunculus roots appear to facilitate substantial depositions of fine sand that are detrimental both to pearl mussels and salmonid fry.
• 5. The rapid spread of invasive Ranunculus is a potential threat to the conservation status of M. margaritifera in the River Spey.

Copyright © 2007 John Wiley & Sons, Ltd.     

Introduced northern pike predation on salmonids in southcentral Alaska

Northern pike (Esox lucius) are opportunistic predators that can switch to alternative prey species after preferred prey have declined. This trophic adaptability allows invasive pike to have negative effects on aquatic food webs. In Southcentral Alaska, invasive pike are a substantial concern because they have spread to important spawning and rearing habitat for salmonids and are hypothesised to be responsible for recent salmonid declines. We described the relative importance of salmonids and other prey species to pike diets in the Deshka River and Alexander Creek in Southcentral Alaska. Salmonids were once abundant in both rivers, but they are now rare in Alexander Creek. In the Deshka River, we found that juvenile Chinook salmon (Oncorhynchus tshawytscha) and coho salmon (O. kisutch) dominated pike diets and that small pike consumed more of these salmonids than large pike. In Alexander Creek, pike diets reflected the distribution of spawning salmonids, which decrease with distance upstream. Although salmonids dominated pike diets in the lowest reach of the stream, Arctic lamprey (Lampetra camtschatica) and slimy sculpin (Cottus cognatus) dominated pike diets in the middle and upper reaches. In both rivers, pike density did not influence diet and pike consumed smaller prey items than predicted by their gape‐width. Our data suggest that (1) juvenile salmonids are a dominant prey item for pike, (2) small pike are the primary consumers of juvenile salmonids and (3) pike consume other native fish species when juvenile salmonids are less abundant. Implications of this trophic adaptability are that invasive pike can continue to increase while driving multiple species to low abundance.     

Salmonid colonization of new streams in Glacier Bay National Park, Alaska

Abstract. Following the rapid recession of a neoglacial ice sheet within the last 250 years, colonization of recently deglaciated streams by salmonid fishes was investigated in Glacier Bay National Park, south-eastern Alaska. The primary factors governing the establishment, species diversity composition and abundance of salmonids in Glacier Bay streams were water temperature, sediment loading and stream discharge. No salmonids were found in the turbid meltwater streams emerging from retreating ice. Coho, Oncorhynchus kisutch (Walbaum), and sockeye, Oncorhynchus nerka (Walbaum). salmon and Dolly Vardcn, Salvelinus malma (Walbaum), charr were the first salmonids to colonize the youngest clearwater stream. Juvenile Dolly Varden were more abundant than juvenile coho salmon in the most recently formed clearwater stream because of the characteristic absence of pool habital. Densities of juvenile coho salmon were six times greater in a stream with a series of lakes compared with a stream of similar age without lakes. Future advancement of salmonid stocks will probably depend upon the rate and extent of the development of riparian vegetation and inputs of large woody debris from the developing forest to provide further instream cover, habitat variation and channel stabilization.     

Density of juvenile brown trout and Atlantic salmon in natural and man-made riverine habitats

The density of juvenile brown trout (Sulmo trutta L.) and Atlantic salmon (Salmo salar L.) was significantly higher along river bank areas protected against erosion than along natural river banks in the River Gaula, Central Norway. A habitat shift appeared in Atlantic salmon, and a behavioural shift was demonstrated by brown trout from August October. The effect of habitat on densities of juvenile salmonids should be taken into account as mitigation measures on eroded river banks and when assessing fish production in rivers.     

Interactions of baseflow habitat constraints: Macroinvertebrate drift,stream temperature,and physical habitat for anadromous salmon in the Calapooia River,Oregon

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Direct and indirect effects of riparian canopy on juvenile Atlantic salmon,Salmo salar,and brown trout,Salmo trutta,in south‐west Ireland

Abstract Dense riparian tree canopy is generally found to have a negative effect on salmonid populations. Canopy can affect fish both directly via trophic impacts and its effects as cover, and indirectly via its effects on the distribution of instream vegetation. This study examined the impact of riparian canopy on the ecology of juvenile Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in south‐west Ireland. Riparian canopy reduced the density, length and gut contents of juvenile salmon, but not brown trout. The negative relationship between canopy cover and fish size and feeding was strongly influenced by the abundance of instream macrophytes, which in turn varied as a function of catchment water chemistry. As a management strategy, the reduction of dense riparian canopy is unlikely to have the same effect on juvenile salmonids on all streams within an ecoregion because of differences in catchment‐wide factors.     

Landscape‐level constraints on recruitment of chinook salmon (Oncorhynchus tshawytscha) in the Columbia River basin,USA

• 1. The decline of salmonid populations in the Pacific Northwest has been well‐documented. It is unclear, however, which threats to salmonid persistence are the most serious, and how best to prioritize recovery efforts intended to ameliorate these threats.
• 2. It has been argued previously that one possible cause of salmon endangerment is degradation of spawning grounds. In order to explore this hypothesis, this study examines the relationships between chinook salmon (Oncorhynchus tshawytscha) productivity and landscape‐level characteristics of spawning grounds in the interior Columbia River Basin.
• 3. Population productivity is expressed as the mean and maximum recruitment rates for different stocks, measured from 1980 to 1990; habitat conditions are calculated using sub‐watershed scale data on land cover, land use, water quality and watershed hydrology.
• 4. Significant linear regression results were obtained for three environmental variables: percentage of land classified as urban, proportion of stream length failing to meet water quality standards, and an index of the ability of streams to recover from sediment flow events. A multiple regression with all three variables accounts for over 60% of the variation in mean salmon recruitment.
• 5. It further appears that these landscape attributes may limit the maximum recruitment rates of salmon, with a magnitude of difference in productivity large enough to be relevant to recovery planners. Additional study will be necessary to identify cause‐and‐effect linkages between habitat quality and salmon recruitment success, and to determine the ultimate impact of changes in recruitment rates on short‐ and long‐term salmon population trajectories.

Copyright © 2002 John Wiley & Sons, Ltd.     

Assessment of a catchmentwide salmon habitat rehabilitation scheme on a drained river system in Northern Ireland

A catchment‐scale salmon, Salmo salar L., habitat enhancement scheme was developed for the River Main (Northern Ireland) with reference to baseline habitat and electric fishing surveys. In total, 19 separate sites were enhanced using flow deflectors or random boulder addition. Habitat suitability for juvenile salmon increased at enhanced sites following the scheme, and significant changes in underlying physical habitat characteristics (particle size, depth and flow) were detected after the installation of flow deflectors. The overall index of salmon fry recruitment, monitored across the catchment, showed no change between pre‐ and post‐enhancement periods. The mean biomass of salmon evident at individual enhancement sites (5.1 g m^?2) was significantly higher than the mean biomass at control sites (1.2 g m^?2). Increased densities of >0+ juvenile salmon were associated with enhanced sites relative to controls. Marking studies indicated the potential for long‐range dispersal of juvenile salmon between 0+ (summer) and 1+ (summer) age classes. The potential of the scheme to enhance the local salmon stock was discussed.     

The vertical distribution of juvenile salmon (Oncorhynchus spp.) and associated fishes in the Columbia River plume

Simultaneous trawling at surface and at depth at one location off the Columbia River, Oregon, in June 2000 identified the depth distribution of juvenile salmonids and associated fishes. Juvenile salmon off the Columbia River were distributed primarily near the surface, within the upper 12 m. Highest densities of subyearling chinook salmon (Oncorhynchus tshawytscha) off the Columbia River were associated with high surface currents and decreasing tidal levels, with time of day possibly a co‐factor. Densities of yearling chinook salmon increased with higher turbidity. Pacific herring (Clupea pallasi) was the most abundant and commonly caught forage fish, with density increasing at night, probably related to diel vertical migration. Catches of juvenile salmonids were not associated with catches of forage fishes. Daytime surface trawling appears to be an appropriate method for assessing the distribution and abundance of juvenile salmonids in marine habitats.     

Summer habitat and movements of juvenile salmonids in a coastal river of Washington State

We investigated the summer ecology of juvenile steelhead trout Onchorhynchus mykiss and Chinook salmon O. tshawytscha in the context of habitat use and movement behaviour. The study area was a 14.8 km section of the Chehalis River, Washington, and is of particular interest due to recent proposals for both a flood retention dam and restoration actions in this watershed. Ten study reaches were paired in distance upstream and downstream from a central point where a passive integrated transponder antenna array was operated between late June and September 2014. Juvenile densities for each species were associated with reach‐scale habitat and temperature characteristics. Juvenile steelhead underwent upstream and downstream movements up to 7 km, although more fish from further away moved downstream than upstream. Juvenile steelhead repeated horizontal movements throughout the study period, but daily detections were not associated with temperature or flow. The majority (81%) of steelhead movements occurred between the hours of 04:00–07:00 and 18:00–21:00. Juvenile Chinook underwent a downstream migration that was nearly complete by the end of August. Most juvenile Chinook were detected just once and movements occurred on days with warmer stream temperature and higher flows. The majority of Chinook movements occurred at night. Although juvenile salmonids are often thought to have small home ranges during summer months, our results suggest that horizontal movements may be more prevalent than previously thought. Summer habitat should be defined by a network of suitable rearing reaches with connectivity available in both upstream and downstream directions.     

Influence of European sculpin, Cottus gobio, on Atlantic salmon Salmo salar, recruitment and the effect of gravel size on egg predation – implications for spawning habitat restoration

Abstract  The study examined if recruitment of juvenile Atlantic salmon, Salmo salar L., was influenced by the presence of European sculpin, Cottus gobio L., and if the spawning substrate size used by salmon influences sculpin predation on salmon eggs. A combination of information on spawning site selection by female salmon and associated densities of juvenile salmon indicated that recruitment of juvenile salmon was 10 times lower in areas where sculpin was present than areas without sculpin. Predation rate on salmon eggs was found to be dependent on substrate size in artificial redds created in stream aquaria using four different sizes of substrate (13, 23, 37 and 62 mm). Predation rate averaged 83% in the aquaria with the largest substrate size, whereas a rate of only 2–3% was observed using smaller substrate sizes. Sculpin may thus be an important factor influencing the recruitment of juvenile salmon. Selecting small enough gravel sizes during restoration of salmon spawning habitat could therefore be important to minimise egg predation.     

The Fraser River plume: some preliminary observations on the distribution of juvenile salmon, herring, and their prey

Zooplankton and fish densities in the southern Strait of Georgia were observed to coincide with variations in surface salinities resulting from the outflow of the Fraser River. Vertical net hauls in the euphotic zone revealed that copepods, amphipods, and euphausiids were significantly more abundant per m³ in the brackish estuarine plume (surface salinities - 10–15 ppt) when compared to the area covered by the freshwater of the Fraser River plume (0–10 ppt) and the region of the Strait of Georgia (25–30 ppt) unaffected by the outflow of the Fraser River.
The estuarine and riverine plumes had significantly higher fish densities (adult and juvenile herring, and juvenile salmonids [excluding chinook]) than the Strait of Georgia region, with no significant differences in densities of juvenile chinook salmon observed between regions. The highest catches of juvenile salmonids were at the boundary between the estuarine plume and the Strait of Georgia. Zooplankton found in the stomach contents of both adult and juvenile herring suggested that the herring were filter-feeding on the zooplankton in the estuarine plume. Juvenile salmonids fed primarily on small unidentifiable juvenile fish. The existence of increased densities of prey items in the estuarine plume is proposed to be the primary mechanism resulting in increased residence time in this region by outmigrating juvenile salmonids. Utilization of aggregated zooplankton could lead to increased salmonid growth rates and therefore to enhanced survival of individuals utilizing the Fraser River plume environment.     

Variation of juvenile Atlantic salmon (Salmo salar) body composition along sedimentary links*

Johnston P, Bergeron NE. Variation of juvenile Atlantic salmon (Salmo salar) body composition along sedimentary links.
Ecology of Freshwater Fish 2010: 19: 187–196. © 2010 John Wiley & Sons A/S Abstract – The objective of this study was to determine the proximate body composition of juvenile Atlantic salmon along the sequence of aquatic habitat types created by longitudinal changes in the riverbed substrate of two rivers (i.e., sedimentary links units). Interesting trends in the body composition were observed but our initial hypothesis, that fish of the upstream sections have higher energy content, was nevertheless not verified. No common longitudinal pattern was detected in the body composition (water, lipid, energy density) along the studied rivers. Trends in the body constituents were different between age‐classes and rivers, whereas they were highly variable within‐ and among‐samples. There was however a common trend in the pattern of variations, with the coefficient of variations increasing in the downstream direction for almost all constituents, age‐classes and rivers. Potential abiotic and biotic factors that might have contributed to these observations are discussed.     

Linking watershed and microhabitat characteristics: effects on production of Atlantic salmonids (Salmo salar and Salmo trutta)

The spatial scale of environmental factors influencing population dynamics ranges from microhabitat to continental or even global scales. Integration of multiple spatial scales is important in order to understand links between environmental variation and population processes. In the present study, we investigate how multiscale drivers influence the production of stream‐rearing Atlantic salmonids (Atlantic salmon, Salmo salar L. and brown trout, Salmo trutta L.) measured in terms of abundance. Variation in juvenile production was studied using data from single‐pass electrofishing surveys (measured as biomass per m²) from nine rivers. These data were combined with habitat data ranging from an important in‐stream microhabitat variable (shelter availability) to properties of the catchment. Variation in productivity within and among rivers was affected by both properties of in‐stream habitat and catchment properties. Shelter availability and the proportion of the catchment consisting of cultivated land and lakes influenced biomass positively, while catchment area had the opposite effect. For a different set of rivers (N = 20), river gradient and catchment area were shown to positively affect the amount of shelter. Finally, the variables identified in the two preceding analysis were included in the analysis of population productivity using catch statistics from 160 rivers. The proportion of cultivated land and lakes, estimated shelter availability were found to have positive effects. In addition, temperature had a positive effect, while river width had a negative effect. This study shows that combining multiple‐scale environmental factors can explain a substantial proportion of variation in population productivity among and within the populations of Atlantic salmonids.     

Use of first‐order tributaries by brown trout (Salmo trutta) as nursery habitat in a cold water stream network

Many investigators have examined the importance of suitable in‐stream habitat and flow regime to salmonid fishes. However, there is much less known about the use of small (<5 l·s^?1 discharge) first‐order streams within a larger stream network by salmonids. The purpose of this study was to evaluate the use of small headwater streams by juvenile brown trout Salmo trutta in the Emmons Creek stream network in Wisconsin, USA, and to determine whether abundance was related to habitat variables in these streams. Fishes in eight spring‐fed first‐order streams were sampled during a 7‐month period using a backpack electroshocker and measured for total length. Habitat variables assessed included stream discharge, water velocity, sediment composition and the abundance of cover items (woody debris and macrophytes). Densities of YOY trout ranged from 0 to 1 per m² over the course of the study and differed among first‐order streams. Stepwise multiple regression revealed discharge to be negatively associated with trout density in spring but not in summer. All other habitat variables were not significantly related to trout density. Our results demonstrate the viability of small first‐order streams as nursery habitat for brown trout and support the inclusion of headwater streams in conservation and stream restoration efforts.     

Density‐dependent territory size and individual growth rate in juvenile Atlantic salmon (Salmo salar)

Whether territoriality regulates population size depends on the flexibility of territory size, but few studies have quantified territory size over a broad range of densities. While juvenile salmonids in streams exhibit density‐dependent mortality and emigration, consistent with space limitation, there has been relatively little study of how territory size and individual growth rate change over a broad range of densities, particularly in field experiments. Consequently, we manipulated the density (range = 0.25–8 m^?2) of young‐of‐the‐year (YOY) Atlantic salmon (Salmo salar) in mesh enclosures erected in a natural stream to test whether (i) territory size is fixed, decreases continuously or decreases towards an asymptotic minimum size as density increases; and (ii) individual growth rate decreases as a negative power curve with density as in observational field studies. Territory size decreased with increasing density, consistent with an asymptotic minimum size of about 0.13 m² for a 5‐cm fish. Individual growth rate also decreased with density, although the magnitude of decrease was steeper than in observational studies. Our results suggest a limit to how small territories can be compressed, which will set the upper limit to the local density in a habitat. The density‐dependent changes in territory size and individual growth rate will both play a role in the regulation of stream salmonid populations.     

Spatial and temporal distribution of fish in a small lowland stream

Abstract  The fish fauna and habitat characteristics in five reaches of a small lowland stream were studied through the summer and winter of one year. All species densities, except Atlantic salmon, Salmo salar L., were correlated with either instream or outstream cover, reaffirming the importance of cover to maintain the local abundance of fish populations. There were significant differences between reaches in the density of all the fish species studied, with the exception of the larger size group of dace. Leuciscus leuciscus (L.), and between sampling times for salmon, dace and eel, Anguilla anguilla (L.). There were significant differences between reaches for all the measured habitat variables apart from instream cover, and between sampling times for velocity. instream cover, and substrate particle size, but not depth, width:depth ratio and outstream cover. The implications of these variations for fish stock assessment and predictive fish habitat models such as PHABSIM and habitat suitability indices are discussed.