Influences of local habitat and stream spatial position on fish assemblages in a dammed watershed,the Qingyi Stream,China

Abstract – Identifying the underlying mechanisms that explain the spatial variation in stream fish assemblages is crucial for the protection of species diversity. The influences of local habitat and stream spatial position on fish assemblages were examined from first‐order through third‐order streams within a dammed watershed, the Qingyi Stream, China. Based on linear regression models, the most important environmental variables influencing fish species richness were water temperature and wetted width, but stream spatial position variables were less important. Using canonical correspondence analysis, five environmental variables were identified to significantly influence fish assemblages, including three habitats (elevation, substrate and water depth) and two spatial variables (C‐link and Link). Our results suggest that, in a heavily dammed watershed, by blocking the migration routes of fishes, dams weaken the influence of stream spatial position on fish species richness. However, fish species compositions are significantly influenced by both local habitat environment and stream spatial position, which is perhaps owing to the distribution of fish species according to ecological requirements not related to spatial processes.     

Modelling of stream fishes in the Great Plains, USA

Abstract –  Predicting species distributions has important implications for the conservation and management of freshwater fishes, particularly in areas such as the Great Plains, USA where human impacts have resulted in extirpations and declines for numerous native species. There are a number of statistical approaches for constructing distributional models; the accuracy of each is likely dependent on the nature of the environmental gradients, species responses to those gradients and the spatial extent of the modelling. Thus, it is important to compare multiple approaches across species and habitats to identify the most effective modelling approach. Using geographical information system (GIS) derived characteristics of stream segments as predictors, we tested the model performance of three methodologies – linear discriminant function analysis, classification trees and artificial neural networks (ANN) – for predicting the occurrence of 38 fish species in a Great Plains river basin. Results showed that all approaches predicted species occurrences with relatively high success. ANN generally were the best models, in that they generated the most significant models (35 of 38 species) and most accurately predicted species presence for the greatest number of species (average correct classification = 81.1%). The importance of GIS variables for predicting stream fish occurrences varied among species and modelling techniques, but were generally strong predictors of species distributions, including the federally endangered Topeka shiner Notropis topeka . In summary, predictive models should be viewed as both competitive and complementary methodologies for establishing quantitative linkages between fish species and their environment. Our study demonstrates the potential utility of such an approach for guiding conservation efforts for stream fishes of the Great Plains, USA.     

Trait–environment relationships in Amazon stream fish assemblages

Studies of trait–environment relationships provide important tools for the prediction of the response of biological communities to environmental alterations. The Amazon basin presents enormous potential for the development of research on this type of relationship, given the diversity of both its fish fauna and the aquatic ecosystems this fauna inhabits. The present study investigated the association between local environmental variables and the functional traits of fish in 54 streams of six major Amazonian basins. We identified the relationship between the characteristics of the streams (channel morphology, channel habitat units, riparian vegetation cover, large woody fragments and instream cover for aquatic organisms) and fish traits related to locomotion, habitat use and feeding behaviour. The fish fauna of the broader, deeper and more slowly flowing streams was dominated by nektobenthic species that exploit autochthonous resources such as fish and invertebrates. In narrow, fast‐flowing streams, by contrast, there was a predominance of benthic fishes with varying feeding habits, including periphytivorous and invertivorous species. Narrow, shady streams were inhabited by nektonic species adapted for the exploitation of resources from the marginal vegetation. The results of this study contribute to the understanding of the association between the functional structure of fish assemblages and local environmental variables in Amazonian streams. We hope that these findings will stimulate further research into the natural variation in stream fish assemblages that will ensure the development of more effective management strategies that better protect these important aquatic ecosystems.     

太子河河流等级对鱼类群落结构及环境因子的影响

河流等级是一种用于评价河流生物多样性及环境特征的重要分类标准。以太子河流域为研究区域探究河流等级与鱼类群落分布之间的关系以及鱼类群落分布特征与环境因子之间的响应关系,并将太子河主要支流作为独立流域单元进行相同等级河流之间鱼类群落分布差异的比较。共设置125个点位,分3次调查鱼类群落和水环境理化特征,调查共采集到鱼类18 883尾,分属23科60种,洛氏鱥、宽鳍鱲、北方条鳅、棒花鱼为优势种,分别占鱼类总数的35.52%、8.58%、6.63%、5.53%。太子河流域鱼类群落结构在不同河流等级之间有显著差异,指示种分析表明洛氏鱥与北方条鳅是上游河段的指示种,短须颌须鮈与东北雅罗鱼是中游河段的指示种,?、大鳞副泥鳅及鰕虎鱼类是下游河段的指示种;摄食功能群在各级河流也有显著差异,杂食性鱼类的比例及物种数在三级河流和五级河流较高,昆虫食性的鱼类在一级河流和二级河流比例较高,昆虫食性鱼类的物种数在五级河流较高。河流等级对鱼类群落的物种丰富度和多样性水平有显著影响(F=3.644,P=0.008;F=2.543,P=0.043),最大值出现在三级河流。各等级河流之间总氮和氨氮有显著差异;相同等级河流...     

Modelling stream fish species distribution in a river network: the relative effects of temperature versus physical factors

Abstract – The relative influence of temperature versus local physical factors on the spatial distribution of riverine fish species was investigated in a large watershed of south-western France. Using generalised additive models and hierarchical partitioning, we modelled the ecological responses of 28 fish species to a set of five environmental predictors, and we quantified the independent effect of each predictor. The spatial distribution of fish species was primarily determined by both mean temperature and position along the upstream–downstream gradient. However, responses to these environmental factors varied according to the species considered. Fish species with strong thermal requirements (e.g., common carp, black bullhead, Atlantic salmon) were mainly sensitive to temperature whereas longitudinal gradient was of primary importance for downstream species (e.g., common bream, largemouth bass, pike perch). Both the statistical methods used gave concordant results and appeared complementary. This dual-approach, quantifying the relative contribution of each environmental factor, appears particularly useful to understand the spatial distribution of stream fish species. Separating the effects of temperature versus habitat factors is crucial to accurately predict species distribution modifications in the current context of global change.     

Modelling the habitat requirement of riverine fish species at the European scale: sensitivity to temperature and precipitation and associated uncertainty

Abstract – Species distribution models (SDMs) have been widely used for different purposes such as studying species niche or forecasting the effects of global change on species distribution. Nevertheless, these models are often calibrated on datasets that only cover a fraction of the species’ realised niches, which could lead to unrealistic results. The aim of this study was to model the habitat requirements of 21 freshwater fish species that are native to Europe, using a dataset that accurately reflects their realised niches. Both temperature and precipitation were used as climatic factors to model the habitat requirements of the species, and the uncertainty associated with the fitted environment–occurrence relationships was examined. The results demonstrated the importance of accounting for these two climatic components when estimating the habitat requirements of riverine fish species and whether the uncertainty associated with model expectations varies with the species and the environmental factor considered. These results are discussed with regard to the known ecology of the 21 riverine fish species and within the perspective of climate change.     

基于最大熵模型模拟西北太平洋柔鱼潜在栖息地分布

为模拟西北太平洋柔鱼(Ommastrephes bartramii)潜在栖息地分布,分析柔鱼渔场时空变化和环境变化规律。利用2011—2015年中国鱿钓船在西北太平洋海域获得的柔鱼渔业生产数据,结合该海域海洋环境遥感数据,包括海表面温度(sea surface temperature, SST)、叶绿素a (Chlorophyll-a, Chl a)浓度、净初级生产力(net primary productivity, NPP)、混合层深度(mixed layer depth, MLD)及海平面异常(sea level anomaly, SLA),采用最大熵模型对柔鱼潜在栖息地进行模拟,并利用ArcGIS软件对栖息地适宜性进行评价。结果显示,7月柔鱼最适宜区主要分布在39°N～43°N, 150°E～163°E。8月柔鱼最适宜区向东移动,较适宜区向北扩张至46°N。9月柔鱼最适宜区和较适宜区面积向西缩小,主要集中在40°N～46°N, 150°E～160°E。10月最适宜区和较适宜区向南移动,主要分布在40°N～45°N,150°E～165°E。各月影响柔鱼潜在分布的重要环境因子有所差异,7—8月为SST,9月为MLD和SST,10月为NPP和SST。研究表明西北太平洋柔鱼分布受海洋环境因子的影响,时空变化明显,最大熵模型对西北太平洋柔鱼潜在栖息地分布的模拟精度非常高。     

Relative importance of local and landscape variables on fish assemblages in streams of Brazilian savanna

Understanding variability in the composition of aquatic assemblages requires a multiscale perspective, since processes operating at different spatial scales (from regional to local) drive the community assembly. Here, the relative importance of environmental variables on fish species composition in streams of the Brazilian savanna (Cerrado) is assessed and quantified at local and landscape scales. The importance of both local and landscape environmental variables in structuring fish assemblages was supported. Local variables explained a substantially higher amount of variance of fish assemblages than landscape variables. However, the shared explanation indicate that landscape variables had a complementary effect. The streams sampled were mostly headwaters at similar altitudes and with similar watershed sizes, so the sensitivity of the fish assemblages, even to small landscape gradients, is highlighted. Maintaining these important instream habitat characteristics close to natural conditions seems to be essential for conserving stream fish species, and for this, the landscape context should be taken into account. Considering the near‐pristine condition of the streams studied, these findings can be used as a reference for further studies addressing the effects of human modifications on stream fish biodiversity of the Cerrado.     

基于CART算法的长江口鱼种丰富度预测

长江口是西太平洋最大的河口生态系统和典型的生态群落交错区,预测鱼类生物多样性对评价其生态系统有着重要的科学指示意义。结合2012―2013年长江口15个站点的渔业资源和环境调查数据,利用分类与回归树(CART)算法中的回归树算法,构建了长江口鱼种丰富度预测模型。基于1-SE准则,最优决策树的复杂性参数设置为0.067,结果表明,盐度、溶解氧和季节是影响长江口鱼类生物多样性的主要因子。此外,使用2014年的观测数据对回归树模型预测的长江口鱼种丰富度予以验证,均方根误差(RMSE)、平均相对误差(ARE)和平均绝对误差(AAE)值的统计结果显示,回归树模型在春、夏季的预测效能优于秋、冬季,模型总体上呈现出了较好的预测能力,表明利用CART算法对长江口鱼种丰富度进行预测是可行的。     

Electrofishing efficiency in low conductivity neotropical streams: towards a non‐destructive fish sampling method

Rotenone sampling is the most efficient method for assessing the fish assemblage structure and species abundance of low conductivity Amazonian streams. It does, however, cause fish mortality and disturb aquatic ecosystem. The aim of this study was to search for a non‐destructive alternative. The efficiency of electrofishing was compared against complete removal using rotenone. This procedure was repeated in 12 streams dispersed throughout French Guiana to test for environmental and biological effects such as water conductivity, stream depth, fish family membership and body size. This study revealed that the efficiency of electrofishing was influenced by stream conductivity and stream depth, but not by fish family or body size. The electrofishing method might constitute an efficient alternative to using rotenone in smaller streams (below 25‐cm depth and above 43 μS cm^?1), whereas in deeper and/or slightly conductive streams, rotenone still remains the only method able to provide a quick and comprehensive picture of the fish assemblage.     

Modelling the oceanic habitats of two pelagic species using recreational fisheries data

Defining the oceanic habitats of migratory marine species is important for both single species and ecosystem‐based fisheries management, particularly when the distribution of these habitats vary temporally. This can be achieved using species distribution models that include physical environmental predictors. In the present study, species distribution models that describe the seasonal habitats of two pelagic fish (dolphinfish, Coryphaena hippurus and yellowtail kingfish, Seriola lalandi), are developed using 19 yr of presence‐only data from a recreational angler‐based catch‐and‐release fishing programme. A Poisson point process model within a generalized additive modelling framework was used to determine the species distributions off the east coast of Australia as a function of several oceanographic covariates. This modelling framework uses presence‐only data to determine the intensity of fish (fish km^?2), rather than a probability of fish presence. Sea surface temperature (SST), sea level anomaly, SST frontal index and eddy kinetic energy were significant environmental predictors for both dolphinfish and kingfish distributions. Models for both species indicate a greater fish intensity off the east Australian coast during summer and autumn in response to the regional oceanography, namely shelf incursions by the East Australian Current. This study provides a framework for using presence‐only recreational fisheries data to create species distribution models that can contribute to the future dynamic spatial management of pelagic fisheries.     

Land cover,riparian zones and instream habitat influence stream fish assemblages in the eastern Amazon

The Amazon rainforest has experienced rapid land‐use changes over the last few decades, including extensive deforestation that can affect riparian habitats and streams. The aim of this study was to assess responses of stream fish assemblages to deforestation and land cover change in the eastern Amazon. We expected that percentage of forest in the catchment is correlated with local habitat complexity, which in turn determines fish assemblage composition and structure. We sampled 71 streams in areas with different land uses and tested for relationships between stream fish assemblages and local habitat and landscape variables while controlling for the effect of intersite distance. Fish assemblage composition and structure were correlated with forest coverage, but local habitat variables explained more of the variation in both assemblage composition and structure than landscape variables. Intersite distance contributed to variance explained by local habitat and landscape variables, and the percentage of variance explained by the unique contribution of local habitat was approximately equivalent to the shared variance explained by all three factors in the model. In these streams of the eastern Amazon, fish assemblages were most strongly influenced by features of instream and riparian habitats, yet indirect effects of deforestation on fish assemblage composition and structure were observed even though intact riparian zones were present at most sites. Long‐term monitoring of the hydrographic basin, instream habitat and aquatic fauna is needed to test for potential legacy effects and time lags, as well as assess species responses to continuing deforestation and land‐use changes in the Amazon.     

Geographic, terrestrial and aquatic factors: which most influence the structure of stream fish assemblages in the midwestern United States?

Abstract – Effects of environmental or landscape factors on species composition, species richness and complexity of fish assemblages were examined using our collections of fish from 65 sites on streams in 13 drainages across the midwestern United States. Effects of environmental factors were examined at three scales: broad geographic factors included drainage, latitude, and longitude; local terrestrial factors included features of the riparian zone adjacent to the collecting site as well as local climate and land use; within-stream aquatic factors related to structure and hydrology of the stream reach sampled. Each assemblage property was examined for its relationship to factors at each scale separately, and then for relative importance of all factors found to be significant in the separate analyses. Assemblage composition (summarized as sample scores on two axes of a detrended correspondence analysis) varied significantly as a function of factors at all three scales when each scale was considered separately. With simultaneous consideration of all scales, however, only broad geographic factors (particularly latitude) and local terrestrial factors explained significant variation in assemblage composition. Species richness (the number of species we captured) was explained by longitude and within-stream aquatic factors both when considered separately and together. Assemblage complexity (quantified as slope of relative abundance versus rank abundance) was only related to within-stream aquatic factors. Assemblage composition and emergent assemblage properties (richness and complexity), therefore, were explained by factors acting at different scales. The total variation explained for assemblage composition was much greater than that explained for emergent assemblage properties, suggesting that assemblage composition may vary more as a function of environmental and landscape factors than do species richness and complexity. ^NOTE     

Ecological effects of regime shifts in the Bering Sea and eastern North Pacific Ocean

Large‐scale shifts occurred in climatic and oceanic conditions in 1925, 1947, 1977, 1989 and possibly 1998. These shifts affected the mix and abundance of suites of coexisting species during each period of relative environmental stability—from primary producers to apex predators. However, the 1989 regime shift was not a simple reversal of the 1977 shift. The regime shifts occurred abruptly and were neither random variations nor simple reversals to the previous conditions. Timing of these anomalous environmental events in the North Pacific Ocean appears to be linked to physical and biological responses in other oceanic regions of the world. Changes in the atmospheric pressure can alter wind patterns that affect oceanic circulation and physical properties such as salinity and depth of the thermocline. This, in turn, affects primary and secondary production. Data from the North Pacific indicate that regime shifts can have opposite effects on species living in different domains, or can affect similar species living within a single domain in opposite ways. Climatic forcing appears to indirectly affect fish and marine mammal populations through changes in the distribution and abundance of their predators and prey. Effects of regime shifts on marine ecosystems are also manifested faster at lower trophic levels. Natural variability in the productivity of fish stocks in association with regime shifts indicates that new approaches to managing fisheries should incorporate climatic as well as fisheries effects.     

基于河流网络体尺度的皖河河源溪流鱼类群落的空间格局

2013年7-8月对大别山皖河河源1～3级溪流的鱼类进行了调查,着重从河流网络体空间尺度研究了鱼类多样性及群落结构的空间格局,探讨了局域栖息地条件和支流空间位置对鱼类群落的影响.1～3级溪流间,鱼类物种数随溪流级别增大显著增多,但个体数无显著变化(P＞0.05);长河、潜水和皖水3条支流间鱼类物种数和个体数均无显著差异(P＞0.05).鱼类物种数受局域栖息地条件(海拔)和支流空间位置(河流级别和下游量级)的联合影响,但鱼类个体数仅受局域栖息地条件(海拔)的影响.不同溪流级别和不同支流间的群落结构均无显著差异(P＞0.05).同物种数类似,鱼类群落结构也受局域过程(海拔)和空间过程(汇合量级和下游量级)的联合影响.本研究表明,总体上皖河河源溪流网络体中的鱼类群落是局域过程和空间过程联合作用的产物.因此,为合理保护和管理皖河河源的溪流鱼类物种,有必要兼顾局域栖息地条件与河流网络连通性的保护和恢复.     

Acoustic telemetry versus monitored longline fishing for studying the vertical distribution of pelagic fish: bigeye tuna (Thunnus obesus) in French Polynesia

This study compares detailed, nearly continuous, observations on bigeye tuna, Thunnus obesus equipped with electronic tags, with discrete observations on a larger number of individuals from fishing experiments in order to validate the use of instrumented longlines to study the vertical distribution of fish. We show that the depth distributions obtained from the two different observation techniques regarding different environmental variables (temperature, dissolved oxygen (DO), prey distribution) are similar. Bigeye tuna do not seem to be attracted by baits in the vertical dimension (no modification of their vertical distribution by the fishing gear), which allows the use of instrumented longlines to study the vertical behaviour of pelagic species. This technique, when used with appropriate deployment strategy, could therefore represent an alternative to electronic tags (acoustic or archival tags) when there is a need to determine the vertical distribution of fish species by size or sex, in different environments for the study of fishery interactions.     

Explaining spatial variability in stream habitats using both natural and management‐influenced landscape predictors

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Biogeographic freshwater fish pattern legacy revealed despite rapid socio‐economic changes in China

Understanding drivers of freshwater fish assemblages is critically important for biodiversity conservation strategies, especially in rapidly developing countries, which often have environmental protections lagging behind economic development. The influences of natural and human factors in structuring fish assemblages and their relative contributions are likely to change given the increasing magnitude of human activities. To discriminate natural and human drivers of fish diversity and assemblage patterns in developing countries with rapid socio‐economic development, a dataset of 908 freshwater fish species and 13 metrics including three categories of both natural (i.e., biogeographic) and human drivers (i.e., economic growth, inland fisheries) in China were analysed with machine learning algorithms (i.e., self‐organizing map, random forest). Here, we found that biogeographic drivers explained 21.8% of the observed fish assemblage patterns in China and remained stronger predictors when compared to human drivers (i.e., 15.6%, respectively). Freshwater fish species richness was positively correlated to rainfall, air temperature, surface water area and inland fisheries production but negatively correlated with urbanization. In addition, the strong structuring effects of climatic variables on Chinese fish richness patterns suggested that the fish assemblages could be particularly vulnerable to climate change. Our results showed that natural biogeographic factors still dominate in driving freshwater fish assemblage patterns despite increased human disturbances on aquatic ecosystems in a rapidly developing country. These findings consequently suggested that we should consider both natural (e.g., climate) and human (e.g., urbanization, inland fisheries) factors when establishing aquatic conservation strategies and priorities for developing countries that are experiencing rapid socio‐economic changes.     

Factors affecting fish assemblage structure during seasonal stream drying

Abstract –  We evaluated fish assemblage structure during stream drying in north west Arkansas in 2002 and 2003. We sampled fish with a seine and backpack electrofisher and measured habitat variables along transects. Linear regression models were selected a priori and ranked according to Akaike's Information Criterion. In 2002, total fish density was negatively related to pool area and maximum depth, and positively related to canopy openness and substrate diversity. Similarly, central stoneroller ( Campostoma anomalum , Rafinesque) and creek chub ( Semotilus atromaculatus , Mitchill) densities were negatively related to maximum pool depth. In 2003, fish species richness was positively related to pool area whereas total fish, central stoneroller, and creek chub densities were negatively related to maximum pool depth. In addition, total fish density was negatively related to substrate diversity. Results indicated that physical factors are important predictors of fish assemblage structure during stream drying. However, differences among response variables between years indicated that the magnitude of stream drying might be critical in intermittent streams.     

Effects of environment on fish species distributions in the Mackenzie River drainage basin of northeastern British Columbia, Canada

Abstract –  The northeast of British Columbia is subject to rapid development by the oil and gas sector. In addition, forestry, tourism and agriculture are all affecting the environment. Knowledge of fish distributions in the region is limited, yet such information is important if environmental impact assessments are to be taken for future developments. Data from fish inventories for 261 stream reaches from the Milligan Creek, Halfway-Graham River, Fort Nelson River and Gataga River were analyzed using canonical correspondence analysis, with fish presence being related to a suite of environmental variables. The most important environmental variables affecting the species of fish present in a reach were water temperature, boulder cover and reach width. As water temperature and, to a lesser extent, reach width, can be affected by industrial development in a number of ways, there is a likelihood of environmental impacts associated with the current spate of development in the region.