Earthworms and pH affect communities of nematodes and enchytraeids in forest soil

In northern boreal forests the occurrence of endogeic and anecic earthworms is determined by soil pH. Increasing evidence suggests that large detritivorous soil animals such as earthworms can influence the other components of the decomposer community. To study the effects of earthworms and pH on soil nematode and enchytraeid communities, a factorially designed experiment was conducted with Lumbricus rubellus and/or Aporrectodea caliginosa. Earthworms were added to "mesocosms" containing unlimed (pH 4.8) or limed (pH 6.1) coniferous mor humus with their natural biota of micro-organisms. In the absence of earthworms, nematodes were significantly more abundant in limed than in unlimed humus. Earthworms markedly decreased the numbers of nematodes both in unlimed and limed soils. Earthworm activities eliminated enchytraeids in unlimed soil, but liming improved the survival of some species. It was concluded that liming of soil, either alone or mediated by the earthworm populations, is likely to affect soil nematode and enchytraeid community and mineralisation.     

Labile carbon effects on nematodes, enchytraeids, and N mineralization in Norway spruce forest soil

The effect of sucrose (4 g kg⁻¹) on the population dynamics of nematodes and enchytraeids and on N mineralization was studied in laboratory microcosms containing 30 g of Norway spruce forest humus. Sucrose did not have a positive influence on nematode and enchytraeid dynamics but neither ammonium nor nitrate concentration was affected. The results indicate that faunal activity can counteract microbial N immobilization at C limited conditions.     

Effects of lumbricids and enchytraeids on nematodes in limed and unlimed coniferous mor humus

In a factorial laboratory experiment, specimens of Dendrobaena octaedra (Lumbricidae) and Cognettia sphagnetorum (Enchytraeidae) were added to microcosms with unlimed (pH 4.5) and limed (pH 5.5) coniferous mor humus containing bacteria, fungi, protozoans, and nematodes. Effects on the nematodes were assessed after an incubation period of 207 days at 15°C and a soil moisture content of 60% water-holding capacity. When D. octaedra was absent, nematodes were significantly more abundant in the limed humus than in the unlimed humus. The presence of D. octaedra markedly reduced the number of nematodes in the limed humus but not in the unlimed one, where D. octaedra lost weight and probably did not feed. Most nematodes (92–97%) were bacterial-feeders. The presence of D. octaedra did not decrease the number or biomass of bacteria, indicating that the reduction in nematode numbers was not the result of competition for bacteria between D. octaedra and the nematodes. The presence of C. sphagnetorum had no effect on the nematodes in either of the treatments. We suggest that the reason why D. octaedra, but not C. sphagnetorum, reduced nematode numbers is that the former was more likely to inadvertently ingest the nematodes because of its much greater size. The results provide a possible explanation for the observation that liming sometimes enhances nematode populations, when lumbricids do not respond to the treatment, and sometimes causes decreases, when lumbricids increase in number.     

Effects of fungivorous and predatory arthropods on nematodes and tardigrades in microcosms with coniferous forest soil

Effects of fungivorous and predatory soil arthropods on free-living nematodes and tardigrades were studied in a factorial microcosm experiment. A stepwise increase in faunal complexity was obtained by adding soil arthropods to defaunated humus samples from an irrigated+fertilized and an untreated stand of Scots pine. The effects were assessed after 103 and 201 days at 15°C and a soil moisture content of 50% water-holding capacity. The study showed that a diverse community of fungivorous arthropods (collembola and oribatid mites), present in numbers similar to those in the field, reduced the abundance of nematodes. A complete community of fungivorous and predatory arthropods (e.g., gamasides, spiders, and cantharid larvae) further strengthened this repressive effect. Certain nematode genera were more affected than others. Tardigrades seemed to be efficient predators on nematodes, but their numbers were, in turn, strongly reduced by predatory arthropods. Because predatory arthropods fed on both nematodes and their tardigrade predators, the impact of arthropod predators on nematode regulation was greater than it appeared to be on the basis of nematode numbers. Humus type also interacted with the other factors. Nematode numbers were initially higher in the untreated humus than in the irrigated+fertilized humus. However, because tardigrade populations increased only in the untreated humus, nematode numbers decreased more in this humus than in the irrigated+fertilized humus. The study demonstrates that nematode abundance can be regulated by a number of types of interacting predators.     

Dynamics of extracellular DNA decomposition and bacterial community composition in soil

Microbial necromass is an important source of stabilized organic matter in soil, yet the decomposition dynamics of necromass constituents have not been adequately characterized. This includes DNA, a nutrient-rich molecule that when released into the environment as extracellular DNA (eDNA) can be readily used by soil microorganisms. However, the ecological relevance of eDNA as a nutrient source for soil microorganisms is relatively unknown. To address these deficits, we performed a laboratory experiment wherein soils were amended with ¹³C-labeled eDNA and clay minerals known to interact with DNA (kaolinite and montmorillonite). The amount of eDNA-carbon remaining in the soil declined exponentially over time. Kaolinite amendment decreased eDNA decomposition rates and, after 30 days, retained a higher fraction of eDNA-carbon (∼70% remaining) than control or montmorillonite soils (∼40% remaining), indicating that clay mineral sorption can stabilize eDNA-derived carbon in soil. Sequencing of bacterial 16S rRNA genes showed that during the incubation the relative abundance of the added eDNA's sequence decreased by 98%, 92% and 99% in the control, montmorillonite, and kaolinite amended soils respectively. These results suggest that the fraction of eDNA-carbon that remained in the soil was incorporated into microbial biomass, firmly bound to soil constituents, or fragmented and no longer amenable to sequencing. In addition, the eDNA amendment affected the composition of the bacterial community. Specifically, the relative abundance of select phyla (Planctomycetes and TM7) and genera (e.g., Arthrobacter and Nocardioides) were elevated in soils that received eDNA, suggesting these groups may be particularly effective at degrading eDNA and using it for growth. Taken together, these results indicate that while eDNA is consumed by bacteria in soil, a fraction of eDNA material is resistant to decomposition, particularly when stabilized by soil minerals, suggesting a substantial amount of recalcitrant eDNA could accumulate over time.     

Spatial analysis reveals differences in soil microbial community interactions between adjacent coniferous forest and clearcut ecosystems

Knowledge of how forest management influences soil microbial community interactions is necessary for complete understanding of forest ecology. In this study, soil microbial communities, vegetation characteristics and soil physical and chemical properties were examined across a rectangular 4.57 × 36.58 m sample grid spanning adjacent coniferous forest and clearcut areas. Based on analysis of soil extracted phospholipid fatty acids, total microbial biomass, fungi and Gram-negative bacteria were found to be significantly reduced in soil of the clearcut area relative to the forest. Concurrent with changes in microbial communities, soil macroaggregate stability was reduced in the clearcut area, while no significant differences in soil pH and organic matter content were found. Variography indicated that the range at which spatial autocorrelation between samples was evident (patch size) was greater for all microbial groups analyzed in the clearcut area. Overall, less spatial structure could be resolved in the forest. Variance decomposition using principal coordinates of neighbor matrices spatial variables indicated that soil aggregate stability and vegetation characteristics accounted for significant microbial community spatial variation in analyses that included the entire plot. When clearcut and forest areas were analyzed separately, different environmental variables (pH in the forest area and soil organic matter in the clearcut) were found to account for variation in soil microbial communities, but little of this variation could be ascribed to spatial interactions. Most microbial variation explained by different components of microbial communities occurred at spatial scales other than those analyzed. Fungi accounted for over 50% of the variation in bacteria of the forest area but less than 11% in the clearcut. Conversely, AMF accounted for significant variation in clearcut area, but not forest, bacteria. These results indicate broadly disparate controls on soil microbial community composition in the two systems. We present multiple lines of evidence pointing toward shifts in fungi functional groups as a salient mechanism responsible for qualitative, quantitative and spatial distribution differences in soil microbial communities.     

Effects of acidification and liming on feeding groups of nematodes in coniferous forest soils

Summary Nematodes were sampled in untreated, acidified, and limed plots in a Norway spruce (Fexboda) and a Scots pine (Norrliden) stand. At Fexboda, the total number of nematodes was significantly reduced after the acidification. This reduction was probably due to a shock effect, because the samples were taken only 5 months after an application of 200 kg H₂SO₄ ha^-1 to the forest floor. However, the root/fungal-feeding Aphelenchoides was not reduced, probably because it is more tolerant of high acid concentrations than most other nematodes. At Norrliden, where the samples were taken 7 years after the last application of H₂SO₄, no significant differences were found between the acidified and untreated plots. If the treatment with H₂SO₄ caused similar effects as at Fexboda, the results indicate a recovery of the nematode populations. Decreased predation from lumbricids rather than a recovery of microfloral populations probably allowed this recovery. No marked effect of lime, spread 2 (Fexboda) and 12 years (Norrliden) before the sampling on the numbers of any of the nematode feeding groups was found. This correlated with almost no change in bacterial biomass after liming, while the active fraction of fungal hyphae was unaffected by liming at Fexboda and reduced by liming at Norrliden. A tendency for decreasing numbers of all nematode feeding groups in the limed plots at Norrliden coincided with increasing numbers of lumbricids.     

Spatial changes of soil fungal and bacterial biomass from a sub-alpine coniferous forest to grassland in a humid, sub-tropical region

 Fungal and bacterial biomass were determined across a gradient from a forest to grassland in a sub-alpine region in central Taiwan. The respiration-inhibition and ergosterol methods for the evaluation of the microbial biomass were compared. Soil fungal and bacterial biomass both significantly decreased (P<0.05) with the shift of vegetation from forest to grassland. Fungal and bacterial respiration rates (evolved CO₂) were, respectively, 89.1 μl CO₂ g^–1 soil h^–1 and 55.1 μl CO₂ g^–1 soil h^–1 in the forest and 36.7 μl CO₂ g^–1 soil h^–1 and 35.7 μl CO₂ g^–1 soil h^–1 in the grassland surface soils (0–10 cm). The fungal ergosterol content in the surface soil decreased from the forest zone (108 μg g^–1) to the grassland zone (15.9 μg g^–1). A good correlation (R ²=0.90) was exhibited between the soil fungal ergosterol content and soil fungal CO₂ production (respiration) for all sampling sites. For the forest and grassland soil profiles, microbial biomass (respiration and ergosterol) declined dramatically with depth, ten- to 100-fold from the surface organic horizon to the deepest mineral horizon. With respect to fungal to bacterial ratios for the surface soil (0–10 cm), the forest zone had a significantly (P<0.05) higher ratio (1.65) than the grassland zone (1.05). However, there was no fungal to bacterial ratio trend from the surface horizon to the deeper mineral horizons of the soil profiles. Received: 30 March 2000     

不同细菌饲喂细菌线虫对土壤细菌数量、活性以及群落结构的影响

The effects of bacterial-feeding nematodes on bacterial number, activity, and community composition were studied through a microcosm experiment using sterilized soil inoculated with soil bacteria （soil suspension） and with bacteria and three species of bacterial-feeding nematodes （ Cephalobus persegnis, Protorhabditis filiformis, and Caenorhabditis elegans）. Catalyzed reporter deposition-fluorescence in situ hybridization, CO2 evolution, and denaturing gradient gel electrophoresis （DGGE） of PCR ampli- fied 16S rRNA gene fragments were used to investigate bacterial numbers, antivity, and community composition, respectively. Our results showed that bacterial numbers and activity significantly increased in the presence of bacterial-feeding nematodes, which indicated that bacterial-feeding nematodes had a significant positive effect on soil bacteria. The different nematode species had different effects on bacterial numbers and activity. C. persegnis and P. filiformis, isolated from native soil, increased the bacterial number and activity more than C. elegans. The DGGE analysis results showed that dominant bacterial species significantly differed among the treatments, which suggested that bacterial-feeding nematode species modified the bacterial community composition in soil. Further gene sequence analysis results showed that the dominant bacterial species in this study were gram-negative bacteria. Given the completely same conditions except nematode species, the varied selective feeding behavior of different nematode species was the most likely reason for the altered bacterial community composition. Overall, the alteration of bacterial numbers, activity and community composition resulting from the bacterial-feeding nematodes may ult!mately affect soil ecological functioning and processes.     

番茄抗性砧木对温室根结线虫和土壤自由生活线虫群落结构动态的影响

抗性砧木嫁接是一种有效防治蔬菜根结线虫病的生物方法。研究番茄抗性砧木Beaufort(Lycopersicon ly-copersicum×L.hirsutum)对其靶标生物——根结线虫和非靶标生物——土壤自由生活线虫的种群动态和群落结构影响的结果表明:抗性砧木小区根结线虫2龄幼虫密度显著低于对照小区,根结线虫2龄幼虫取样时间之间变动显著;根据营养来源可将线虫分为4大营养类群,即食细菌、食真菌、食植物、杂食/捕食性,食真菌、食植物线虫密度变动显著,抗性砧木小区食细菌线虫密度高于对照小区,食真菌线虫密度低于对照小区;应用食真菌线虫数量/食细菌线虫数量指数F/B、修改后的F/B指数、多样性指数H′、丰富度指数D、均匀度指数J、优势度指数λ分析比较抗性砧木小区和对照区土壤线虫生物多样性变化规律,F/B、修改后的F/B、丰富度指数H′和均匀度指数J取样时间之间变动显著,F/B、修改后的F/B、优势度指数λ和均匀度J指数能较好地反映抗性砧木嫁接对线虫群落结构的影响。     

Effects of endogeic earthworms on soil processes and plant growth in coniferous forest soil

Summary The effects of the endogeic earthworm, Aporrectodea caliginosa tuberculata (Eisen) on decomposition processes in moist coniferous forest soil were studied in the laboratory. The pH preference of this species and its effects on microbial activity, N and P mineralization, and the growth of birch seedlings were determined in separate pot experiments. Homogenized humus from a spruce stand was shown to be too acid for A. c. tuberculata. After liming, the earthworms thrived in the humus and their biomass increased (at pH above 4.8). In later experiments in which the humus was limed, the earthworms positively influenced the biological activity in humus and also increased the rate of N mineralization. A. c. tuberculata increased the growth of birch seedlings, with increases observed in stems, leaves, and roots. Neither NH ₄ ⁺ -N fertilizer nor mechanical mixing with artificial worms affected seedling growth. No plant-growth-affecting compounds (e.g., hormone-like compounds) due to the earthworms were present in the humus. The shoot: root ratio in the birch seedlings was not affected by either the earthworms or the fertilizer. The experiments revealed the impact of earthworm activity on soil processes and plant growth.     

Dynamic changes of bacterial community under the influence of bacterial-feeding nematodes grazing in prometryne contaminated soil

Microcosm experiments were carried out to study the effects of bacterial-feeding nematodes and prometryne on soil bacterial communities in contaminated soil. Prometryne (5 or 10 mg kg⁻¹ dry soil, that is, P5 or P10) and bacterial-feeding nematodes (5 or 10 individuals g⁻¹ dry soil, that is, N5 or N10), singly and in combination (P5N5, P5N10, P10N5, P10N10), were added to a nematode-free soil. An uncontaminated nematode-free soil was studied for comparison (Control). Bacterial-feeding nematode grazing boosted soil enzyme activities in contaminated soils, thus speeding up prometryne degradation. In the initial stage of the experiment, prometryne enhanced the soil enzyme activities too, but served the opposite purpose later. Denaturing gradient gel electrophoresis (DGGE) analysis indicated that prometryne contamination and nematode grazing over the incubation period exerted an obvious impact on Species richness (S), Shannon–Wiener index (H′) and Evenness (E_H) of soil bacteria, which increased initially, then decreased and increased again later. The cluster analysis of DGGE profiles showed that the similarity of soil bacterial communities in all treatments with indigenous microbes, P5, P5N5, P5N10, P10, P10N5, and P10N10 and the Control was 75%, 44%, 78% and 49% at Day 0, Day 8, Day 18 and Day 30, respectively. Compared to the Control, DGGE profiles displayed a varying characteristic bands pattern in all treatments over the incubation period with certain bands present in the treatments while not in the Control and vice versa, suggesting that bacterial-feeding nematode grazing and prometryne contamination affected soil bacterial communities evidently. Consequently, when added to contaminated soil, bacterial-feeding nematodes can contribute to restoration of contaminated sites by degrading toxic compounds like prometryne through enhanced microbial activity.     

Earthworm species composition affects the soil bacterial community and net nitrogen mineralization

Knowledge of the effects of species diversity within taxonomic groups on nutrient cycling is important for understanding the role of soil biota in sustainable agriculture. We hypothesized that earthworm species specifically affect nitrogen mineralization, characteristically for their ecological group classifications, and that earthworm species interactions would affect mineralization through competition and facilitation effects. A mesocosm experiment was conducted to investigate the effect of three earthworm species, representative of different ecological groups (epigeic: Lumbricus rubellus; endogeic: Aporrectodea caliginosa tuberculata; and anecic: Lumbricus terrestris), and their interactions on the bacterial community, and on nitrogen mineralization from ¹⁵N-labelled crop residue and from soil organic matter.Our results indicate that L. rubellus and L. terrestris enhanced mineralization of the applied crop residue whereas A. caliginosa had no effect. On the other hand, L. rubellus and A. caliginosa enhanced mineralization of the soil organic matter, whereas L. terrestris had no effect. The interactions between different earthworm species affected the bacterial community and the net mineralization of soil organic matter. The two-species interactions between L. rubellus and A. caliginosa, and L. rubellus and L. terrestris, resulted in reduced mineral N concentrations derived from soil organic matter, probably through increased immobilization in the bacterial biomass. In contrast, the interaction between A. caliginosa and L. terrestris resulted in increased bacterial growth rate and reduced total soil C. When all three species were combined, the interaction between A. caliginosa and L. terrestris was dominant. We conclude that the effects of earthworms on nitrogen mineralization depend on the ecological traits of the earthworm species present, and can be modified by species interactions. Knowledge of these effects can be made useful in the prevention of nutrient losses and increased soil fertility in agricultural systems, that typically have a low earthworm diversity.     

Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies

Soil physicochemical properties and microbial communities are highly heterogeneous and vary widely over spatial scales, necessitating careful consideration of sampling strategies to provide representative and reproducible soil samples across field sites. To achieve this, the study aimed to establish appropriate sampling methodology and to determine links between the variability of parameters, utilising two sampling strategies. The first (design 1) involved extracting 25 cores from random locations throughout the field and pooling them into five sets of five cores. The second (design 2) involved a further 25 cores within five 1 m² sub-plots. Sub-samples from each sub-plot were pooled in order to determine between and within sub-plot variability. All samples were analysed independently and as pooled sub-samples. Results indicate that pooling spatially separated samples significantly reduced the variability in pH, compared to individual samples. Pooling samples from a small area resulted in lower within sub-plot variability than between sub-plots for pH and bacterial community composition assessed by terminal-restriction fragment length polymorphism analysis. Following multivariate statistical analysis, a large amount of variation in community composition was explained by soil pH, which is remarkable given the relatively small size of the sampling area and minor differences in pH. Moisture content was also important in determining bacterial communities in the random design (design 1). In the 1 m² sub-plot design (design 2), the spatial location of the plots explained a large degree of the variation in bacterial community composition between plots, which was due to spatial autocorrelation of pH and possible additional environmental parameters. This study emphasises the importance of sampling design for obtaining representative samples from soil.     

Compaction of forest soils with heavy logging machinery affects soil bacterial community structure

Soil compaction is widespread but tends to be most prevalent where heavy machinery is used in landfill sites, agriculture and forestry. Three forest sites strongly disturbed by heavy logging machinery were chosen to test the physical effects of different levels of compaction on soil bacterial community structure and soil functions. Community analysis comprised microbial biomass C and T-RFLP genetic profiling. Machine passes, irrespective of the compaction level, considerably modified soil structural characteristics at two soil depths (5–10 cm; 15–20 cm). Total porosity decreased up to 17% in the severe compaction. Reflected in this overall decline were large decreases in macroporosity (>50 μm). Reduction in macroporosity was associated with higher water retention and restricted gas exchange in compacted soils. The strongest effect was observed in the severely compacted wheel tracks where air and water conductivities were reduced permanently to 10% or even lower of the original conductivities of undisturbed soils. Very slow drainage in combination with a dramatically reduced gas permeability led to unfavorable soil conditions in severely disturbed traffic lanes reflecting the changes in the total bacterial community structures at both soil depths. Additionally, microbial biomass C tended to be lower in compacted soil. Our results indicate that the type of severe treatments imposed at these forest sites may have strong adverse effects on long-term soil sustainability.     

Evaluation of the soil fauna impact on decomposition in a simulated coniferous forest soil

Summary Long-term experiments (ca. 2 years) were carried out in laboratory systems that simulated the complexity of a coniferous forest floor. The test materials were partially sterilized by freezing and thawing, and reinoculated with (1) microbes alone or (2) microbes with fauna. Removable microcosms containing birch litter, spruce litter, or humus were inserted into a humus substrate. Two experiments used organic matter only, and another included a layer of mineral soil below the humus. Both were incubated in climate chambers that simulated both summer and winter conditions. The evolution of CO₂ was measured at regular intervals. In order to determine the C content of the leachates, the macrocosms and the microcosms were watered periodically.Soil fauna significantly increased respiration in the litter, but not in the microcosms containing humus. In the later phases of decomposition the presence of fauna had a negative effect. In the total systems the fauna consistently increased the respiration rate. The loss of mass was greater in the presence of fauna, especially during the middle phases (5–11 months), but it was higher in the controls later.Throughout the whole incubation period the decomposition rate was strongly influenced by the composition of the animal community. The interpretation of the results is affected by the fact that the controls, to which no fauna had been added, contained dense populations of microbial feeders (nematodes, rotifers, and protozoans).     

Urbanization alters the functional composition,but not taxonomic diversity,of the soil nematode community

We evaluated the response of riparian forest soil nematode community structure to the physico-chemical environment associated with urban land use. Soils were sampled seasonally between December 2000 and October 2002 along an urban—rural transect in Asheville, North Carolina. We characterized the taxonomic (to genus) and functional composition (trophic groups) of the nematode community of forest soils, as well as several nematode ecological indicators (maturity index, channel index, weighted faunal index). The diversity of nematode genera was not affected by urban land use. However, there tended to be functional differences in the nematode communities along the land use gradient. The urban soils tended to have lower abundances of predatory and omnivorous nematodes. Differences in channel index scores indicated that there was less fungal dominance in the soil food webs of the urban soils. Our results indicate that the functional composition of the soil food web is an important component of soil biodiversity that can be affected by land use practices. This study was conducted in a relatively small city; hence the influence of pollutants on the soil environment was not as great as in larger cities. Correspondingly, the impact on the soil nematode community was not very severe. The utilization of the nematode community assemblage as an indicator of soil conditions should be further explored in urban places of differing magnitudes of environmental effects.     

长期施肥对旱作区农田土壤细菌群落组成和多样性的影响

为阐明长期有机、无机施肥对旱作区土壤细菌群落组成及多样性的影响机制,以农田土壤生态系统为研究对象,采用单因素随机区组设计,利用长期定位试验(11年)和高通量测序的方法,研究了不施肥(对照,T0)、单施化肥(T1)、化肥配施羊粪有机肥(T2)和化肥配施生物有机肥(T3)对土壤的影响,分析了处理间土壤细菌群落组成及多样性的差异,探究了驱动土壤细菌群落组成及多样性变化的主要土壤环境因子。结果表明:与T0相比,羊粪有机肥、生物有机肥与化肥配施能显著提高土壤全氮、全磷、有机质、碱解氮、有效磷和铵态氮的含量,其中T2处理效果最显著(P<0.05)。各施肥处理下土壤放线菌门(Actinobacteria)、变形菌门(Proteobacteria)、绿弯菌门(Chloroflexi) 细菌为优势菌门;羊粪有机肥、生物有机肥与化肥配施处理降低了土壤放线菌门的相对丰度,增加了绿弯菌门、拟杆菌门和厚壁菌门的相对丰度,T2处理与T0处理间有显著差异(P<0.05)。与T1处理相比,羊粪有机肥、生物有机肥与化肥配合施用使土壤硝化螺旋菌门的相对丰度显著降低。类诺卡氏菌属(Nocardioides)、KD4-96和Subgroup_6为土壤细菌群落的优势菌属。T2处理较T3处理更显著地降低了土壤类诺卡氏菌属(41.15%)、芽球菌属(41.67%)和红杆菌属(27.45%)的相对丰度。与T0处理相比,T2处理更显著增加了细菌群落物种数、群落辛普森指数、香农指数和Chao1 指数(P<0.05)。冗余分析表明,土壤有机质(P=0.001)、pH(P=0.003)是驱动土壤细菌群落组成及多样性变化的主要因素。土壤pH以及有机质含量高低对驱动旱作区土壤细菌群落组成以及土壤细菌多样性变化均产生直接效应。因此,化肥与羊粪有机肥相结合的长期施肥管理是优化旱作区区域农田养分管理、提升土壤肥力的有效途径。     

Clear-cutting affects the ammonia-oxidising community differently in limed and non-limed coniferous forest soils

The effects of clear-cutting on the ammonia-oxidising bacterial community were studied in the soil of limed and non-limed spruce forest plots located in the central part of southern Sweden. The communities were studied using denaturing gradient gel electrophoresis (DGGE) profiling after polymerase chain reaction (PCR) amplification from total DNA with primers reported to be specific for -subgroup ammonia-oxidising bacteria. The bands on the DGGE were sequenced and each unique sequence was interpreted as representing one ammonia-oxidising population. The relative abundance of each population was determined by measuring the fluorescence of the respective DGGE bands. In both limed and non-limed soil, the same two Nitrosospira populations were found, one belonging to cluster 2 (NScl2) and one to cluster 4 (NScl4). However, while NScl4 first appeared a year after the clear-cutting in the non-limed plot, it was present both before and after the cutting in the limed plot. Irrespective of previous liming, clear-cutting caused a shift in the ammonia-oxidiser community, from dominance by the NScl2 population to a community with approximately equal relative abundance of NScl2 and NScl4. In both plots the total size of the community increased after clear-cutting (based on increased DGGE band intensity), most likely due to increased NH₄⁺ availability, but the growth response was faster in the limed plot. Hence, the prior liming increased the responsiveness of the ammonia-oxidisers to the changes caused by cutting. This is the first study to report the effects of clear-cutting on the ammonia-oxidising community, and the results show a clear correlation between increased potential nitrification and a shift in the ammonia-oxidiser community.     

Short-term recovery of soil functional parameters and edaphic macro-arthropod community after a forest fire

Background, aim and scope  Forest fires can result in severe economic and environmental consequences, and little is known about the ecological patterns and processes that may lead to the recovery of burnt areas. In the last decades, Portugal has been the Southern European country with the highest number of fire events and with the highest burnt area per hectare. With this work, we proposed to study the effect of a forest fire on the terrestrial ecosystem. More specifically, this work intended to evaluate the short-term recovery of several soil chemical, biochemical (microbial enzymatic activities) and biological (edaphic macro-arthropod community) variables in a burnt pine tree forest area. Methodology  Soil and macro-arthropod sampling was carried out in a burnt area (transects BI, BII and BIII) and in a neighbouring unburnt area (U) 3 and 8 months after the fire, coinciding with autumn and spring. Soil was collected for the determination of physical (pH and conductivity) and chemical parameters (moisture and organic matter) and soil enzymes (cellulase, acid phosphatase and nitrogen mineralisation rate). Edaphic macro-fauna was captured using pitfall traps. Results  Univariate and multivariate statistics revealed, overall, that burnt sites displayed lower acid phosphatase and cellulase activities and higher conductivity and pH values than the unburnt area. There was a recovery in the measured soil parameters between autumn and spring in the most interior parts of the burnt areas (BII and BIII), but the outer transect (BI, close to a road) still displayed considerable differences to the remaining burnt transects as well as to the unburnt area. A total of 47 macro-arthropod taxa were captured in both seasons, with Linyphiidae spiders (20.2%) and insect families Formicidae (13.4%) and Staphylinidae (11.9%) being the most abundant. Dominance by some taxa was overall stronger in the burnt than in the unburnt area, although dominant taxa varied between seasons. In autumn, the burnt area was dominated by ants and had also a high abundance of scavengers, carrion feeders and some ground active hunters. In spring, there was a general increase in taxa diversity, richness, and total catches; in the burnt area, there was a re-colonisation by several organisms sensitive to litter quality, such as isopods and pseudoscorpions, particularly in the outer transect (closest to the unburnt area). Discussion  Differences in soil parameters between burnt and unburnt areas were most likely due to the deposition of nutrient-rich alkaline ashes. However, low cellulase activity in the outer part of the burnt area (BI) indicated compromised microbial activity in both sampling seasons. Recovery of soil functional parameters was delayed in the outer zone of the burnt area because of (i) fire intensity in that area or (ii) proximity to the road (enhancing erosion and exposure to contaminants). The pattern of arthropod re-colonisation of the burnt area followed the inverse recovery pattern (from the outer zone to the inner zone), stressing the primary role of the adjacent unburnt area as a source of potentially colonizing organisms. Conclusions  Direct and indirect effects of fire on soil parameters (soil alkalinisation and nutrient enrichment) and edaphic fauna had a short-term persistence in the burnt area, and signs of recovery were evident 8 months after the fire (spring). The adjacent unburnt area seemed to act as an important source of arthropod colonisers. Recommendations and perspectives  More prolonged studies on the recovery of soil functional parameters and arthropod community structure are required to understand long-term re-colonisation patterns. Researchers and authorities should also endeavour in the implementation of measures that favour and protect survivors and new indigenous colonisers (microbes, plants and animals) after a forest fire.