一个与稻瘟病菌无毒基因AVR-Pik~m连锁的SCAR标记的分离

 本研究将以前在稻瘟病菌菌株S1522获得的与决定对水稻品种梅雨明无毒性的基因(AVR-Pik^m)相连锁的1个RAPD标记OPO12₁₀₀₀进行了克隆和鉴定。核苷酸序列测定与分析结果表明:OPO12₁₀₀₀的大小为946个碱基,不含有与已报道的稻瘟病菌Mg-SINE、Fosburry、Magyy、Grasshopper、Pot2以及Pot3等同源的重复序列。根据OPO12₁₀₀₀的核苷酸序列,设计了1对24个核苷酸的特异引物,对无毒表型亲本S1522和毒性表型亲本S159、无毒表型群体基因池、毒性表型基因池以及有性杂交后代108个菌株进行了PCR扩增,所有无毒表型的菌株均能特异性地扩增出1条与OPO12₁₀₀₀大小相同的DNA条带,而毒性表型的菌株除5个重组个体外,均不能扩增出这条特异带。此结果表明,与稻瘟病菌无毒基因AVR-Pik^m连锁的RAPD标记OPO12₁₀₀₀被成功地转化为SCAR标记,为进一步通过染色体步移克隆该无毒基因奠定了基础。     

稻瘟菌无毒基因AVR-Pikm的定位

 无毒基因是病原物中决定寄主抗病性表达与否的功能基因,其功能的丧失导致毒性小种的产生。在先前的研究中,本研究小组从稻瘟病菌中分离了与无毒基因AVR-Pik^m连锁的2个SCAR标记SCO12₉₄₆和SCE12₁₄₀₆。在本研究中,作者首先通过TAC克隆末端核苷酸序列的测定及其与70-15全基因组序列的比较,将这2个标记定位到稻瘟菌第1号染色体上;然后,利用稻瘟菌70-15全基因组草图序列和SSR技术,又分离了与无毒基因AVR-Pik^m连锁的4个SSR标记:SSR47T34、SSR50CA24、SSR52TAGG18和SSR56A28。进一步分析表明:上述4个SSR标记位于与SCO12₉₄₆和SCE12₁₄₀₆相反的一侧,与AVR-Pik^m位点的遗传距离分别为4.90、7.01、19.12和21.94cM,无毒基因AVR-Pik^m位于SCE12₁₄₀₆和SSRA7T34之间。本研究获得的稻瘟菌无毒基因AVR-Pik^m的精细定位为通过染色体步移克隆该基因奠定了基础。     

福建省稻瘟病菌致病性及其无毒基因分析

利用41个已知抗性基因水稻品种测定2003—2006年从福建省闽东、闽南、闽西、闽北和闽中5个主要稻区采集分离的87个稻瘟病单孢菌株的致病性。结果表明,福建省稻瘟病菌群体含有与所有测试抗病基因相应的无毒基因,其中66.67%的稻瘟病菌株表现较强致病力。病菌群体对水稻抗病基因Pi-d2、Pi-k(1)、Pi-km、Pi-kh、Pi-1(1)、Pi-z5(1)、Pi-z5(2)和Pi-1(2)的毒力频率均低于10%,提示这些抗病基因在福建省可作抗源使用。2003—2006年福建省稻瘟病菌群体中分别出现了40、37、36和38个无毒基因,其中有34个无毒基因在各年份均有分布,有30个无毒基因在5个主要稻区均有分布,Avr-a(2)、Avr-3(2)、Avr-ks、Avr-4b、Avr-b、Avr-kp(C)、Avr-km(C)、Avr-ta(C)、Avr-11(C)、Avr-19(t)、Avr-t和Avr-a(1)无毒基因的出现频率均低于30%,提示与之相对应的抗病基因在福建省水稻品种抗稻瘟病育种中应慎用。含有17、14、23、18和16个无毒基因组合的病菌较多,其组合频率分别为13.79%、10.34%、9.20%、8.05%和8.05%。     

稻瘟病菌无毒蛋白AvrPiz-t半胱氨酸残基的功能分析

 稻瘟病菌无毒基因AvrPiz-t编码了一个包含108个氨基酸的未知功能的预测分泌蛋白,其与对应的水稻抗稻瘟病基因Piz-t介导了基因对基因的抗病反应。序列分析发现AvrPiz-t的预测成熟蛋白AvrPiz-t₉₀含有4个半胱氨酸残基,推测它们可能参与了AvrPiz-t蛋白分子内或分子间的相互作用。为了检测这4个半胱氨酸对AvrPiz-t功能的影响,利用定点突变技术对4个半胱氨酸残基分别进行了位点突变并构建了相应的稻瘟病菌互补载体。功能互补分析发现,上述4个突变体都丧失了AvrPiz-t无毒基因的功能。由此推断,半胱氨酸对AvrPiz-t蛋白功能的表达是非常重要的。     

云南省六个水稻产区稻瘟病菌三个无毒基因的组成及其致病型

为明确水稻抗性基因Piz-t、Pib和Pii的有效性,利用无毒基因AvrPiz-t、AvrPib和Avr-Pii的特异性引物对自云南省6个水稻产区采集并分离获得的348株稻瘟病菌Magnaporthe oryzae菌株进行PCR扩增检测,并测定其对仅含Piz-t、Pib和Pii基因的水稻抗性单基因系IRBLzt-T、IRBLb-B和IRBLi-F5品种的致病性,明确这3个无毒基因在云南省水稻产区组成及分布。结果表明,在348株稻瘟病菌菌株中,分别有51.7%、46.8%和15.8%的菌株含有无毒基因AvrPiz-t、AvrPib和Avr-Pii,GT8、GT2、GT5、GT6、GT1、GT3、GT4和GT7基因型菌株检测频率分别为24.7%、21.8%、21.0%、16.7%、4.9%、4.0%、3.4%和3.4%;分别有4.9%、29.2%、41.1%和24.7%的菌株含有3、2、1和0个无毒基因;云南省稻瘟病菌群体总多样性指数水平较高,为2.81,其中滇中水稻产区的最高,为2.97;在348株稻瘟病菌菌株中,分别有89.1%、63.2%和38.5%的菌株对单基因系IRBLzt-T、...     

云南省水稻稻瘟病菌无毒基因AVR-Pia变异及水稻抗性基因Pia的有效性

为进一步了解田间稻瘟病菌Magnaporthe oryzae群体中AVR-Pia基因的分布及变异,利用水稻单基因系IRBLa-C水稻品种对自云南省13个市(州)采集分离得到的471株稻瘟病菌菌株进行抗性基因Pia有效性测定;利用无毒基因AVR-Pia特异性标记对471株稻瘟病菌菌株进行PCR检测和测序,并分析稻瘟病菌群体中无毒基因AVR-Pia的分布及DNA结构变异;利用有效性结果和PCR检测结果对471株菌株进行反应型划分,筛选鉴定菌株;利用鉴定菌株对云南省112份地方稻种进行Pia基因鉴定。结果表明,在471株稻瘟病菌菌株中,对含有Pia基因的水稻单基因系IRBLa-C表现为抗病和感病的菌株数分别为139株和332株,所占比例分别为29.5%和70.5%;在471株稻瘟病菌菌株中,分别有244株和227株菌株含有无毒基因AVR-Pia和不含有无毒基因AVR-Pia,所占比例分别为51.8%和48.2%,无毒基因AVR-Pia主要为完全缺失变异;在471株稻瘟病菌菌株中,A-和V+反应型菌株数分别为56株和161株,共217株,占总菌株数的46.1%,在13个市(州)稻瘟病菌群体中,A-和V+反应型菌株所占比例差异较大,其中在普洱市、红河哈尼族彝族自治州、昭通市、玉溪市4个市(州)的比例较大,分别为77.8%、57.1%、52.1%和50.0%;在112份云南省地方稻种质资源中,有20份地方稻品种含有抗性基因Pia,主要分布在9个市(州)中。表明云南省13个市(州)绝大部分水稻产区水稻Pia基因已丧抗性,含Pia基因的水稻种质在云南省分布较广。     

小麦条锈菌新菌系V26的SCAR检测标记

 建立小麦条锈菌生理小种的快速分子检测技术体系对小麦条锈菌的监测和防治策略的制定具有重要价值。条锈菌V26是近年来出现的,对我国目前小麦抗病育种中普遍应用的抗条锈病基因Yr26具有毒性的新菌系。该菌系的出现,对我国当前小麦生产、抗病育种都造成了严重威胁。本研究选用189条随机引物对CYR29、CYR31、CYR32、CYR33、T4、Su11-4和V26等7个条锈菌生理小种(菌系)进行了扩增,筛选V26的特异性RAPD片段,并对其进行克隆和测序。根据测序结果,设计并合成SCAR特异性引物, 将V26的RAPD标记转化为稳定的SCAR标记。使得对该菌系的快速检测成为可能,同时也将会为条锈菌新小种的监测提供更为准确的科学依据。     

云南省元阳县籼/粳型稻瘟病菌无毒基因Avr-Pia、Avr-Pita1和Avr-Pii多样性分析

为明确云南省元阳县籼/粳型稻瘟病菌中无毒基因的多样性及差异,采用接种鉴别品种方法和PCR技术对9株粳型菌株和21株籼型菌株中无毒基因Avr-Pia、Avr-Pita1和Avr-Pii的多样性进行分析。结果显示,30株稻瘟病菌菌株中无毒基因Avr-Pia、Avr-Pita1和Avr-Pii的平均出现频率分别为33.3%、76.7%和0,Avr-Pia、Avr-Pita1在籼型菌株和粳型菌株中的出现频率分别为4.8%和100.0%、66.7%和100.0%。Avr-Pia主要为存在/缺失的多样性,籼/粳型菌株对水稻品种Achiasahi(Pia)的致病率分别为100.0%和11.1%;Avr-Pita1可划分为3个类群,除菌株CH1195属于PO类群外,籼型菌株均属于J1类群,粳型菌株则属于J2/J3类群;籼/粳型菌株对水稻品种K1(Pita)的致病率分别为100.0%和0,且籼/粳型菌株Avr-Pita1蛋白序列在第83位和第192位氨基酸差异明显。Avr-Pii在30株稻瘟病菌菌株中均未检出,籼/粳型菌株对水稻品种Fujisaka No. 5(Pii)的致病率分别为100.0%和0。表明Avr-Pia和Avr-Pita1在粳型菌株中的出现频率高于籼型菌株且变异程度低,粳型菌株中可能存在其它无毒基因使其不能侵染Fujisaka No. 5。     

广东省不同稻区稻瘟病菌生理小种鉴定及无毒基因分析

为明确广东省不同稻区稻瘟病菌Magnaporthe oryzae生理小种与无毒基因的类型与分布,利用7个中国鉴别品种、11个抗稻瘟病单基因系及3个广东省优质抗源稻种三黄占2号、青六矮和珍桂矮,采用苗期喷雾接种方法对2018—2019年分别从广东省不同稻区感染稻瘟病的不同栽培稻品种上分离获得的368株稻瘟病菌单孢菌株进行生理小种鉴定与无毒基因分析。结果显示,利用中国鉴别品种共鉴定出 6 群 30 个生理小种,其中优势种群为 ZB 和 ZC,出现频率分别为 44.29% 和43.48%,优势生理小种为ZB13和ZC13,出现频率分别为26.90%和29.35%。利用11个水稻抗稻瘟病单基因系鉴定出测试菌株对含有Pi9、Pi1、Pik-h和Pi50这4个水稻抗稻瘟病单基因系的无毒性频率均大于80.00%;来自粤北、粤西和珠三角3个稻区的稻瘟病菌对抗源稻种三黄占2号的毒性频率低于11.76%,对珍桂矮的毒性频率大于69.41%。表明2018—2019年广东省稻瘟病菌群体生理小种结构复杂,多样性丰富,在粤北、粤西和珠三角稻区可利用的抗性基因一致,可推广使用含抗性基因Pi9、Pi50、Pik-h和Pi1的水稻品种;三黄占2号抗性好,抗谱较宽,可作为广东省抗稻瘟病种质资源加以利用。     

海南省田间稻瘟病菌中AvrPiz-t基因位点变异

为评估在水稻育种中被广泛利用的广谱抗稻瘟病基因Piz-t的有效性,对不同年份分离自海南省陵水黎族自治县和三亚市水稻的273株田间稻瘟病菌株中的AvrPiz-t位点变异及其与菌株致病性的相关性进行系统研究。结果表明,海南省田间菌株中无毒基因AvrPiz-t位点的变异频率为0～100.00%,陵水黎族自治县菌株中的变异频率远远高于三亚市菌株。在菌株中共鉴定到3种AvrPiz-t位点变异类型,分别为基因位点完全缺失、DNA重复元件MGR583在基因位点启动子区-10 bp上游和编码区218 bp下游插入。所有AvrPiz-t位点变异的菌株对携带Piz-t抗病基因的单基因水稻系IRBL-11均表现出强的致病性。陵水黎族自治县菌株中AvrPiz-t位点的变异频率呈逐年增加趋势,2021年94株菌株中AvrPiz-t位点的变异频率为100.00%,其中51.06%的菌株变异是MGR583在启动子区-10 bp上游插入,表明DNA重复元件MGR583在AvrPiz-t位点插入是AvrPiz-t从无毒到有毒进化的重要机制之一。     

稻瘟菌对水稻品种梅雨明的无毒性的遗传分析和分子标记

 将交配型为a、并对水稻品种梅雨明不致病的稻瘟菌菌株S1522与对该品种致病的、交配型为A的稻瘟菌菌株P131和S159杂交,分别获得了24和56个单子囊孢子后代。致病性测定结果表明:这些后代菌株在梅雨明上的致病个体与不致病个体的比例近等于1:1。由此推测:稻瘟菌对水稻品种梅雨明的无毒性是由1个基因控制的。进一步通过RAPD比较了致病后代与不致病后代的DNA多态型,获得了1个与该无毒基因连锁的、长度为1000 bp的RAPD标记,两者间的遗传距离为3.7cM。     

基于毒性相关基因序列的稻瘟病菌群体遗传多样性分析

 选用16对毒性相关基因特异性引物对四川和重庆9个县(市)分离到的200个稻瘟病菌单孢菌株进行PCR扩增,并采用最长距离法进行聚类分析,结果显示各引物均能扩增出其目的条带,多态位点百分率(P)高达93.75%,扩增频率差异较大;200个菌株可归为70个不同的单元型,其中单元型SCH13为优势单元型;在0.86遗传相似水平上,200个菌株可划分为27个遗传宗谱,包括1个优势宗谱,3个亚优势宗谱,14个次要宗谱,9个小宗谱,层次丰富;在群体平均水平上,病菌群体具有丰富的遗传多样性(H=0.324 4,I=0.484 2),且群体间差异较大;9个种群在遗传距离为0.05水平上可分为4个类群,种群遗传谱系与地理区域分布呈一定相关性。同时,该地区的群体存在一定的遗传分化(HT=0.320 0),群体内多样性大于群体间多样性(Hs=0.179 6,Dst=0.140 4),总遗传变异的56.13%存在于群体内(Gst=0.438 7),群体间基因流动性较小(Nm=0.639 6)。本研究揭示了四川和重庆部分区域稻瘟病菌群体遗传结构、遗传多样性及其与地理分布之间的关系,为抗病育种和品种布局奠定了基础。     

Selection and mutation of the avirulence gene AVR-Pii of the rice blast fungus Magnaporthe oryzae

Magnaporthe oryzae avirulence (AVR) genes are predicted to be involved in pathogen invasion and their virulence functions are restricted by the presence of the cognate resistance (R) genes. In this study, the distribution and variation of the avirulence (AVR-Pii) gene of M. oryzae in Yunnan province, China were analysed to understand haplotype diversity of AVR-Pii under field conditions. The presence of AVR-Pii in 454 field isolates of M. oryzae collected in Yunnan province was examined using gene-specific PCR markers. The results showed that 82 M. oryzae isolates carried AVR-Pii. Among them, 39 (35.5%), 5 (15.2%), 4 (14.3%), 2 (13.3%), 25 (12.8%) and 7 (9.7%) of the M. oryzae isolates carried AVR-Pii from central, southeastern, southwestern, northwestern, western and northeastern Yunnan province, respectively. Of these isolates, 55 were sequenced, while the remaining 27 isolates were not suitable for PCR-based sequencing and were not used for further analysis. Moreover, three AVR-Pii haplotypes were identified among the 55 isolates, in which H1 was identical with a previous sequence in GenBank (accession no. AB498874 ) and H2 and H3 were novel variants. All DNA sequence variations were found to occur in the protein-coding region resulting in amino acid substitutions. One virulent haplotype of AVR-Pii to Pii was identified among 55 field isolates, suggesting that the AVR-Pii gene has lost avirulence function through base substitution. These findings suggest that AVR-Pii is under positive selection and AVR-Pii mutations are responsible for overcoming race-specific resistance in nature.     

稻瘟病菌ABC转运蛋白基因中 SSR的分布及其功能预测

 ABC转运蛋白在真菌的致病性方面起着重要的作用。本研究查找和分析了稻瘟病菌基因组中47个ABC转运蛋白基因的外显子区、内含子区、5′-UTR和3′-UTR区中的SSR,并对编码区中SSR的扩张或收缩对蛋白结构的影响进行了预测。结果表明,SSR在这些基因的调控区和编码区分布不均一,且在基因的外显子区、内含子区、5′-UTR和3′-UTR区中SSR的组成和分布均不相同;基因的编码区中三碱基和六碱基SSR相对较多,SSR的基序大都表现为GC含量较高,编码的亲水性氨基酸出现频率远远高于疏水性氨基酸。根据稻瘟病菌自然群体中SSR的变化幅度,预测了SSR的扩张或收缩对蛋白二级结构的影响,发现SSR的扩张或收缩都可能对蛋白的结构产生影响。暗示着SSR的变异在致病相关基因的变异中可能扮演着重要角色。     

Inhibitors of appressorium formation in Magnaporthe grisea: a new approach to control rice blast disease

Fungi were screened for the production of inhibitors of appressorium formation in germinating conidiospores of Magnaporthe grisea on inductive and non-inductive surfaces. Bioactivity-guided isolation yielded glisoprenins A, C, D and E from Gliocladium roseum and oleic acid from three fungi. The glisoprenins were active only on a hydrophobic surface, whereas oleic acid inhibited appressorium formation on a hydrophilic surface when 1,16-hexadecanediol, but not 8-(4-chlorophenylthio)adenosine-3′,5′-monophosphate, was used as inducer. The inhibition by glisoprenins could be reversed competitively by 1,2-dioctanoylglycerol but not by 1-oleoyl-2-acetyl-glycerol, both effective activators of protein kinase C in mammalian cells. Other mono-unsaturated fatty acids also inhibited appressorium formation. The corresponding methyl esters were inactive. The results agree with previous findings that at least two signal-transducing pathways are involved in appressorium formation. In addition, the differences observed between fungal signalling via PKC and the pathway used in mammalian cells could be used for the search for new and selective fungicides for rice blast disease. © 1998 Society of Chemical Industry     

Relationship between Avirulence Genes of the Same Family in Rice Blast Fungus Magnaporthe grisea

A genetic cross between rice-field isolates of Magnaporthe grisea produced progeny segregating for avirulence/ virulence on six rice cultivars among nine race differentials, while on three other cultivars, Shin 2 (Pik-s), Aichi Asahi (Pia) and Ishikari Shiroke (Pii), parental and progeny isolates were all virulent. Based on segregation ratios in 115 progeny isolates, avirulence on Kanto 51 (Pik), Yashiro-mochi (Pita), Fukunishiki (Piz) and Toride 1 (Piz-t) is under monogenic control. On Tsuyuake (Pik-m) and Pi No. 4 (Pita-2), however, a disproportionate ratio in the segregation was observed, suggesting that avirulence on these two cultivars is controlled by two or more genes. Assuming that the avirulence gene AvrPik-m consists of at least two genes, AvrPik-m1 and AvrPik-m2, each of which functions in the whole gene AvrPik-m, and that one of AvrPik-m1 and AvrPik-m2 is AvrPik, we could account for the disproportion in the avirulence/virulence segregation of the progeny. This hypothesis would also be consistently applied for avirulence gene AvrPita-2. There seem to be two types of the avirulence genes : AvrPik-m, that is comprised of the tightly linked genes, AvrPik-ml (=AvrPik) and AvrPik-m2, and AvrPita-2, that is comprised of the loosely linked genes AvrPita-2A (=AvrPita) and AvrPita-2B. As one possible explanation of the rice resistant reaction to blast, multiple specificity was suggested for the first time for the blast fungus. On the contrary, the avirulence genes AvrPiz and AvrPiz-t were inherited independently, despite the corresponding genes for resistance (Piz and Piz-t) being located at the same locus. The cross of rice blast isolates (races 447 and 337) produced only 25 kinds of races in the progeny, although theoretically about 64 kinds of races should be produced if six avirulence genes segregated independently. Because no progeny are with AvrPik (or AvrPita) and without AvrPik-m (or AvrPita-2), the number of races theoretically should be 36 at most. A number of strains, such as races 377 and 737, with a single avirulence gene were obtained from this cross. These strains may be valuable for analysis of resistance genes in rice plant. Received 19 August 2002/ Accepted in revised form 11 November 2002     

水稻主要抗瘟基因对福建稻瘟菌群体的抗性分析

 用1995-2003年间在福建省水稻产区采集的稻瘟菌代表菌系的108个分离菌,它们在CO39近等基因系上测定被划分为30个毒性类型,用它们在30个水稻抗稻瘟病近等基因系或单基因系品种上进行抗病性测定。结果表明水稻抗稻瘟病基因Pi-k^h抗性最强,抗性频率高达98.15%,Pi-1和Pi-9(t)也具有较高的抗性频率,是较好的抗源;对2个和3个Pi基因的联合抗性频率的分析,发现一些联合抗性频率极高,甚至有达到100%的组合,表明抗瘟育种采用多个Pi基因聚合,易于获得抗性强的品种。根据抗病基因与供试菌株互作的亲和性,对供试30个Pi基因可能的系统关系分析得到的初步信息可为抗病基因的聚合与布局策略提供参考。