Forest fragmentation and the distribution, abundance and conservation of the Tana river red colobus (Procolobus rufomitratus)

Evidence suggests that habitat heterogeneity, disturbance, disease, predation and food resources influence primate population abundance. However, few studies have focused on what habitat factors determine the probability that a primate species will occur in a habitat fragment. We analysed forest habitat and colobus population attributes to determine factors that influenced occurrence and abundance of the critically endangered Tana River red colobus. The probability of colobus inhabiting forests was positively related to the relative amount of habitat edge and canopy tree species composition. Most of the variance in the density of colobus monkeys was explained by basal area of food trees (per ha), basal area per food tree, density of food trees, and basal area per tree for all trees. We conclude that effective conservation of primates in fragmented habitats may require strategies that consider factors that influence both the occurrence of a species and its relative abundance.     

Decline in the distribution and abundance of flesh-footed shearwaters (Puffinus carneipes) on Lord Howe Island, Australia

The flesh-footed shearwater (Puffinus carneipes) is a migratory seabird that ranges widely across the Pacific and Indian Oceans. The principal breeding populations are in Australia and New Zealand. The only breeding site in eastern Australia is on Lord Howe Island. Despite it being afforded a high level of legislative protection, the population on Lord Howe Island has declined substantially during the last few decades. The total extent of nesting habitat in 2002 was 24.3 ha, a reduction of 13.4 ha (35.6%) since 1978. Loss of nesting habitat was associated with increased urbanisation, the adverse impact of which extended beyond the footprint of buildings and gardens. In 2002, overall burrow density was 0.123 per m² and the total number of burrows was estimated to be 29,853 ± 5867, a decline of about 19.0% since 1978. A substantial decline in burrow density was evident in the colony where loss of habitat to urbanisation had been greatest. In 2002, 58% of burrows were occupied by breeding birds, and the total population size was estimated to be 17,462 breeding pairs. Breeding success (the proportion of eggs that produced fledglings) was 50%, but was lowest in the most urbanised colony. To avert further declines in the population of flesh-footed shearwaters on Lord Howe Island major changes in land use practices, enforced through appropriate legislation, are needed, together with reductions in the level of seabird bycatch in fisheries operations and in the amount of plastics that litter the world’s oceans.     

Correlates of abundance and breeding success in the globally threatened Hinde's babbler (Turdoides hindei) and its congener, northern pied babbler (T. hypoleucus)

We investigated the relationship between habitat quality, abundance, group size and breeding success in the threatened Kenyan endemic Hinde's babbler (Turdoides hindei; Family Timaliidae), a co-operative breeder mainly associated with riverine thickets in cultivated areas. At two intensively cultivated sites, significantly more Hinde's babbler groups occurred in areas retaining at least 3% thicket cover, while breeding outcome improved where cover exceeded 9%. Despite previous concerns over low breeding success, the percentage of young birds present (17%, n=424 birds aged) was similar to that of a sympatric congener, the northern pied babbler (T. hypoleucus) (12%, n=162), and comparable with that of two other African congeners. Although breeding outcome was positively correlated with adult group size, there was no evidence that larger groups monopolised more favourable habitat or defended larger territories. Group density showed a positive, non-linear relationship with adjacent cover, levelling out where this exceeded 15-20%. Our findings suggest that even a modest increase in thicket cover may significantly raise the density and productivity of Hinde's babblers at these sites.     

Decomposer animals (Lumbricidae, Collembola) and organic matter distribution affect the performance of Lolium perenne (Poaceae) and Trifolium repens (Fabaceae)

Decomposer animals stimulate plant growth by indirect effects such as increasing nutrient availability or by modifying microbial communities in the rhizosphere. In grasslands, the spatial distribution of organic matter (OM) rich in nutrients depends on agricultural practice and the bioturbation activities of large detritivores, such as earthworms. We hypothesized that plants of different functional groups with contrasting nutrient uptake and resource allocation strategies differentially benefit from sites in soil with OM accumulation and the presence of decomposer animals. In a greenhouse experiment we investigated effects of spatial distribution of ¹⁵N-labelled grass litter, earthworms and collembola on a simple grassland community consisting of Lolium perenne (grass) and Trifolium repens (legume). Litter aggregates (compared to homogeneous litter distribution) increased total shoot biomass, root biomass and ¹⁵N uptake by the plants. Earthworms and collembola did not affect total N uptake of T. repens; however, the presence of both increased ¹⁵N uptake by T. repens and L. perenne. Earthworms increased shoot biomass of T. repens 1.11-fold and that of L. perenne 2.50 fold. Biomass of L. perenne was at a maximum in the presence of earthworms, collembola and with litter concentrated in a single aggregate. Shoot biomass of T. repens increased in the presence of collembola, with L. perenne generally responding opposingly. The results indicate that the composition of the decomposer community and the distribution of OM in soil affect plant competition and therefore plant community composition.     

Inferring species distributions in the absence of occurrence records: An example considering wolverine (Gulo gulo) and Canada lynx (Lynx canadensis) in New Mexico

Information about geographic distributions is required for species conservation and management. Ultimately, this information is derived from records of occurrence. However, the reliability and availability of occurrence records are variable. A conceptual framework for evaluating the reliability of occurrence records is provided. Only records associated with physical evidence, especially a museum voucher specimen, are considered verified. However, errors in species identification or location are possible even for verified records. In addition, biases exist in occurrence records because they generally are collected haphazardly. Other sources of bias include sampling error associated with small areas or range limits and aspects of the species’ biology that make it unlikely to be documented. A practical method is provided for interpreting a species’ distribution in a particular area given a paucity of reliable occurrence records. Factors that must be considered for including such areas of interest within the range of a species include: (1) plausible reason for the paucity of records; (2) continuous suitable habitat between the area of interest and localities of reliable occurrence; and (3) absence of biogeographic breaks in the distribution of other organisms with similar evolutionary histories. The possible distribution of wolverine (Gulo gulo) and Canada lynx (Lynx canadensis) in New Mexico provides a case study of this approach. It is concluded that the mountains of north-central New Mexico should be considered within the natural range of wolverine and Canada lynx.     

Sources,distribution and transport of atrazine in the St. Lawrence River (Canada)

A Lagragangian sampling strategy was chosen in order to evaluate the main sources of atrazine to the St. Lawrence River, Canada. Lagrangian sampling was carried out during six sampling trips, one at every hydrological season except winter from the period of the summer low flow of 1990 to the spring freshet of 1992. Loadings of atrazine are subject to annual variations induced by different climatic and hydrological conditions. Loadings of atrazine are also dependent on season. Results emphasize the persistence of atrazine as it was found in significant amounts at the end of the growing season and in the following spring. Variations in loadings of atrazine along the river as well as the lateral distribution of atrazine concentrations in a downstream direction suggest inputs within the province of Quebec. The Great Lakes and the international corridor of the St. Lawrence River contribute 68% of the loading exported to the estuary, while Quebec tributaries account for 8% of the inputs. The inportance of the unmeasured sources within the river itself (24%) stresses the need for further research on internal processes and contaminant transfer in the aquatic environment.     

Accumulation of specific flavonoids in soybean (Glycine max (L.) Merr.) as a function of the early tripartite symbiosis with arbuscular mycorrhizal fungi and Bradyrhizobium japonicum (Kirchner) Jordan

This study is the first report assessing the effect of soil inoculation on the signalling interaction of Bradyrhizobium japonicum, arbuscular mycorrhizal fungi (AMF) and soybean plants throughout the early stages of colonisation that lead to the tripartite symbiosis. In a study using soil disturbance to produce contrasting indigenous AMF treatments, the flavonoids daidzein, genistein and coumestrol were identified as possible signals for regulating the establishment of the tripartite symbiosis. However, it was unclear whether soil disturbance induced changes in flavonoid root accumulation other than through changing the potential for AMF colonization. In this study, soil treatments comprising all possible combinations of AMF and B. japonicum were established to test whether (1) modifications in root flavonoid accumulation depend on the potential for AMF colonization, and (2) synthesis and accumulation of flavonoids in the roots change over time as a function of the early plant-microbial interactions that lead to the tripartite symbiosis. The study was comprised of two phases. First, maize was grown over 3-week periods to promote the development of the AM fungus Glomus clarum. Second, the interaction between soybean, G. clarum and B. japonicum was evaluated at 6, 10, 14 and 40 days after plant emergence. Root colonization by G. clarum had a positive effect on nodulation 14 days after emergence, producing, 30% more nodules which were 40% heavier than those on roots solely inoculated with B. japonicum. The tripartite symbiosis resulted in 23% more N₂ being fixed than did the simpler symbiosis between soybean and B. japonicum. The presence of both symbionts changed accumulation of flavonoids in roots. Daidzein and coumestrol increased with plant growth. However, development of the tripartite symbiosis caused a decrease in coumestrol; accumulation of daidzein, the most abundant flavonoid, was reduced in the presence of AMF.     

Recent decline and potential distribution in the last remnant area of the microendemic Mexican axolotl (Ambystoma mexicanum)

Native populations of the axolotl (Ambystoma mexicanum), a microendemic salamander from Central Mexico, have seen alarming decline in the last decades owing to habitat loss caused by urban growth. The last remnant of its distribution is in a highly heterogeneous urban-rural water system in the Xochimilco region, at the southern edge of Mexico City. We developed a model of the species local distribution based on its ecological niche, using occurrence data and ad hoc limnetic variables via the Genetic Algorithm for Rule-set Production (GARP), to identify suitable areas for the species and prioritize conservation efforts. Results indicated that potential distribution of the axolotl in Xochimilco is limited to 11 sites in six reduced, isolated, and scattered areas, located mostly in zones where traditional agriculture (chinampas) is the primary land use. Recent surveys found only a single organism in the whole study region, in one of the predicted sites, suggesting a critical situation for the long-term survival of the axolotl in the wild, and demanding urgent actions toward habitat and population restoration. This study also illustrates the utility of niche modeling approaches for aquatic systems at a fine scale.     

Extrinsic and intrinsic controls on the distribution of the critically endangered cress, Ischnocarpus exilis (Brassicaceae)

Ischnocarpus exilis, a critically endangered cress, persists in one small population in a 1m² section of a limestone tower in the South Island, New Zealand. The importance of intrinsic (seed production, dispersal ability and habitat specificity) and extrinsic factors (weed competition) acting to restrict the distribution of this threatened species were investigated with a field experiment, demographic monitoring and soil seed bank analysis. I. exilis is not confined to its present site because of high habitat specificity, but rather is limited by low seed production and limited dispersal as well as by competition with invasive weeds. Conservation management of this critically endangered species should focus on controlling weeds and on establishing new populations in suitable weed-free habitat.     

Cattle depredation by puma (Puma concolor) and jaguar (Panthera onca) in central-western Brazil

In this study, data on cattle depredation by puma (Puma concolor) and jaguar (Panthera onca) were recorded for six years (1998-2003) in a cattle ranch in central-western Brazil. Depredation represented 18.9% of the overall cattle mortality, being predominant on calves. In biomass, kills represented 0.4% (63.8 kg/km²) of the ranch’s annual stock. In economic loss, kills represented 0.3% of the cattle stock value. Depredation was mainly associated with cattle’s age class and location along with the time of birth of calves. The proportion of pastures next to forest with depredation (n = 33, 48.5%) was not distinguished to the proportion of pastures not bordering forest with depredation (n = 35, 51.5%). However, the proportion of pastures next to forest with depredation represented 54% (n = 33) of the 61 total pastures that were at least partially surrounded by forest patches or riparian forests that comprised eight continuum blocks of forest fragments of different sizes in the ranch and adjacent areas. No kills occurred in the central portion (main house) of the farm, close to the headquarters where the pastures not bordering forest. The distances of the kills in relation to areas of native forest was 1317.48 ± 941.03 m. In order to reduce depredation, calves should be kept as far as possible from forest areas and concentrated cattle breeding and calving seasons should be encouraged.     

Beaver (Castor canadensis) mitigate the effects of climate on the area of open water in boreal wetlands in western Canada

Shallow open water wetlands provide critical habitat for numerous species, yet they have become increasingly vulnerable to drought and warming temperatures and are often reduced in size and depth or disappear during drought. We examined how temperature, precipitation and beaver (Castor canadensis) activity influenced the area of open water in wetlands over a 54-year period in the mixed-wood boreal region of east-central Alberta, Canada. This entire glacial landscape with intermittently connected drainage patterns and shallow wetland lakes with few streams lost all beaver in the 19th century, with beaver returning to the study area in 1954. We assessed the area of open water in wetlands using 12 aerial photo mosaics from 1948 to 2002, which covered wet and dry periods, when beaver were absent on the landscape to a time when they had become well established. The number of active beaver lodges explained over 80% of the variability in the area of open water during that period. Temperature, precipitation and climatic variables were much less important than beaver in maintaining open water areas. In addition, during wet and dry years, the presence of beaver was associated with a 9-fold increase in open water area when compared to a period when beaver were absent from those same sites. Thus, beaver have a dramatic influence on the creation and maintenance of wetlands even during extreme drought. Given the important role of beaver in wetland preservation and in light of a drying climate in this region, their removal should be considered a wetland disturbance that should be avoided.     

The abundance of nitrogen cycle genes amoA and nifH depends on land-uses and soil types in South-Eastern Australia

Nitrogen is a critical nutrient in plant-based primary production systems, therefore measurements of N cycling by microorganisms may add value to agricultural soil monitoring programs. Bacterial-mediated nitrogen cycling was investigated in soils from two broad land-uses (managed and remnant vegetation) across different Soil Orders from three geomorphic zones in Victoria, Australia, by examining the abundance of the genes amoA and nifH using quantitative polymerase chain reaction (qPCR). The aim of the study was to identify parameters influencing bacterial populations possessing the genes nifH and amoA, and examine their distribution at a regional scale across different management treatments. The gene amoA was most abundant in the neutral to slightly alkaline surface soils from Calcarosols in North-West Victoria. There was a highly significant (P < 0.001) interaction between land-use and geomorphic zones in terms of the abundance of amoA. Detection of the gene nifH was site specific with low copy number (less than 100 copies per nanogram of DNA) observed for some strongly acidic surface soil sites in North-East Victoria (Dermosols) and South-West Victoria (Sodosols/Chromosols), while nifH was more abundant in selected Calcarosols of North-West Victoria. The gene amoA was detected across more sites than nifH and was strongly influenced by land-use, with almost consistently greater abundance in managed compared to remnant sites, particularly for North-West and South-West Victoria. The abundance of nifH was not related to land-use, with similar copy numbers observed for both managed and remnant sites at some locations. For the gene nifH, there was no significant interaction between land-use and geomorphic zones, between managed and remnant sites or between the three geomorphic zones. Regression tree analysis revealed a number of likely soil chemical and microbial variables which may act as drivers of gene abundance of amoA and nifH. Variables identified as drivers for amoA included pH, Olsen P, microbial biomass carbon, nitrate and total nitrogen while for nifH the variables were microbial biomass carbon, electrical conductivity, microbial biomass nitrogen, total nitrogen and total potassium. Measures of N cycling genes could be used as an additional indicator of soil health to assess potential ecosystem functions. The spatial scale of the current study demonstrates that a landscape approach may assist soil health monitoring programs by evaluating N cycle gene abundance in the context of the different microbial and chemical conditions related to Soil Order and land-use management.     

Applying species distribution modelling for the conservation of the threatened saproxylic Stag Beetle (Lucanus cervus)

Despite its size and attractiveness, many Lucanus cervus sites remain undetected in NW Europe because of its short flight period and its nocturnal activity. Therefore, present-day designated conservation areas for L. cervus are probably insufficient for a sustainable conservation of the species. We applied eight species distribution modelling techniques (artificial neural networks, classification tree analysis, generalised additive models, generalised boosting models, generalised linear models, mixture discriminant analysis, multiple adaptive regression splines and random forests) to predict the distribution of L cervus in Belgium using 10 randomly generated calibration and evaluation sets. We used AUC, sensitivity (% correctly predicted presences in the evaluation set) and specificity (% correctly predicted absences in the evaluation set) and Kappa statistics to compare model performances. To avoid the incorporation of only marginally suitable woodland sites into the Natura 2000 network, we, conservatively, considered the species as being present only in grid cells where all 10 randomly generated model sets predicted the species as such. Model performance was, on average, good allowing to predict the potential distribution of L. cervus accurately. According to the predicted distribution using the more robust prevalence threshold, only 5731 ha (11% of the potentially suitable area) is protected under the Natura 2000 scheme in Belgium. Subsequently, we categorised the potentially suitable woodlands into three conservation priority categories based on their surface area and the already designated Natura 2000 area. Including the most suitable L. cervus woodlands previously not included in the Natura 2000 sites within such network would require protecting an area of 15,260 ha. Finally, we discuss the implications of using species distribution modelling for nature policy decisions in designating conservation networks.     

Predictive modelling and ground validation of the spatial distribution of the New Zealand long-tailed bat (Chalinolobus tuberculatus)

The use of predictive models is continually increasing, but few models are subsequently field-checked and evaluated. This study evaluates the statistical strength and usefulness for conservation purposes of a predictive habitat use model developed for Chalinolobus tuberculatus, a threatened microchiropteran bat species found in the temperate rainforests of New Zealand. The relationship between various environmental variables and the presence/absence of the species was investigated using generalised linear modelling. The model developed was coupled with GIS data to develop maps of predicted occurrence within the West Coast region of New Zealand’s South Island. It was found that distance to forest boundary, slope, presence of Nothofagus, general land cover, variability in mean annual solar radiation, and mean ambient winter minimum temperature were significantly associated with the occurrence of the species. Evaluation of the statistical strength of the distribution model with independent data of species’ occurrence collected at 152 sites found that the C. tuberculatus model showed a moderate ability to predict both species presence and absence (τ(b) coefficient = 0.37). The field detection rate (0.45) using this model was significantly higher than that of historical surveys (0.12). The value of the species habitat model and the need to evaluate its utility in the development of conservation strategies is discussed.     

Declining abundance of American ginseng (Panax quinquefolius L.) documented by herbarium specimens

American ginseng (Panax quinquefolius L.) is a native North American forest herb whose roots have been collected for their reputed medicinal properties and exported to international markets for nearly 300 years. Numerous anecdotal reports suggest declining abundance throughout its range, and the species is currently listed in Appendix II of the Convention on International Trade in Endangered Species of Wild Fauna and Flora. This study examines the putative decline of American ginseng over the last 150 years in 19 US states by using data from herbarium specimens. For successive time intervals, we calculate the numbers of American ginseng specimens in addition to the numbers of specimens of related taxa that are not commercially harvested. The proportions of American ginseng specimens from adjacent time intervals are then examined for significant changes. An additional analysis evaluates the potential for species overrepresentation in the database due to species collection bias. Despite evidence of preferential collection of American ginseng, the proportion of American ginseng specimens declined significantly through time for six northern states. This result is consistent with a long and intense history of harvest, extensive deforestation in northern regions of the United States, and slow regeneration of American ginseng.     

Intra-specific effects of forest loss on the distribution of the forest-dependent northern long-eared bat (Myotis septentrionalis)

Forest fragmentation by the expansion of human activities is acknowledged as an important factor driving declines of forest species worldwide and quantitatively characterizing this trend is essential to understanding the response of populations of forest-dependent species. To examine the impacts of forest cover loss and changes in composition on forest-dependent bats, we examined the effects of these factors on the distribution of the northern long-eared bat (Myotis septentrionalis) in a case study. We surveyed forest fragments in the forest-agricultural landscape of Prince Edward Island, Canada, to assess the occupancy of bats in fragments. Logistic regression and multimodel inference using Akaike’s information criteria were used to identify potentially important predictor variables influencing the distribution of the northern long-eared bat at the fragment and landscape level and quantified their effects. A compositional variable, area of deciduous stands, was found to be the best predictor of the presence of M. septentrionalis. We found the effects of fragmentation were greatest at the fragment level for females and at the landscape level for males. This case study emphasizes the importance of examining intra-specific resource selection in how it affects the response of a forest-dependent species to fragmentation.     

The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum)

Pea plants were grown in γ-irradiated soil in pots with and without addition of the AM fungus Glomus intraradices at sufficient N and limiting P. Depending on the growth phase of the plant presence of AM had negative or positive effect on rhizosphere activity. Before flowering during nutrient acquisition AM decreased rhizosphere respiration and number of protozoa but did not affect bacterial number suggesting top-down regulation of bacterial number by protozoan grazing. In contrast, during flowering and pod formation AM stimulated rhizosphere respiration and the negative effect on protozoa decreased. AM also affected the composition of the rhizosphere bacterial community as revealed from DNA analysis (DGGE). With or without mycorrhiza, rhizosphere respiration was P-limited on very young roots, not nutrient limited at more mature roots and C-limited at withering. This suggests changes in the rhizosphere community during plant growth also supported by changes in the bacteria (DGGE).     

Habitat moisture availability and the local distribution of the Antarctic Collembola Cryptopygus antarcticus and Friesea grisea

Population densities of the Collembola Cryptopygus antarcticus and Friesea grisea were compared in two maritime Antarctic habitats with different moisture availability. C. antarcticus was absent from the drier rock platform habitat, where F. grisea was the only collembolan collected. In contrast, the sand/pebble habitat on East Beach had greater moisture availability, and C. antarcticus dominated the arthropod community, with juveniles (individuals <1 mm length) representing 58% of the population. The hygropreference characteristics of F. grisea were determined in relative humidity (RH) gradients (12-98% RH) at 10 and 20 °C. F. grisea demonstrated a stronger preference for 98% RH conditions than C. antarcticus, suggesting that the former species is less likely to vacate moist refuges when available. The movement of both species was also monitored at 10 and 15 °C under conditions of 33, 75 and 100% RH. C. antarcticus was more active than F. grisea at both temperatures, and its movement increased at a greater rate as a consequence of reduced RH. The limited desiccation tolerance of C. antarcticus, combined with the increased water loss that would result from its continued movement under declining RH conditions, suggests this species is not well suited to drought-prone environments. In contrast, the reduced movement and ‘risk averse’ behavioural strategy of F. grisea, i.e. taking advantage of moist refuges when available, facilitates water conservation between precipitation/habitat rehydration events. This study provides the first evidence that moisture availability and habitat structure are potential habitat segregation mechanisms between these two Antarctic Collembola.     

The western jewel butterfly (Hypochrysops halyaetus): factors affecting adult butterfly distribution within native Banksia bushland in an urban setting

Adult western jewel butterflies Hypochrysops halyaetus Hewitson were studied in the Koondoola Regional Bushland Reserve on the northern outskirts of the Perth metropolitan area, Australia, in 1999. The butterfly is myrmecophilous, and the southern (Perth) form is considered to be ‘Vulnerable’. Butterfly dispersal, distribution, population size and habitat preferences were estimated using mark-recapture techniques. Butterflies were capable of moving large distances, and were widespread within the reserve but with a low density; however, one small physical area (80 × 20 m) contained a colony with large numbers of individuals. This colony, and an adjacent area of bush, was subject to a detailed microdistribution study: 1158 butterflies were marked within it over a 25-day period. The small size of the microdistribution study area compromised statistical independence assumptions: spatial autocorrelation was tested for and corrected, where appropriate, using a Markov-chain Monte-Carlo approach. Sex differences were evident in spatial autocorrelation: female data were not spatially autocorrelated, whilst male data was. The latter probably reflects the impact of the perching mode of mate location employed by males. Butterflies appeared to prefer rather degraded bush typical of a post fire/disturbance regime with high densities of the host plant Jacksonia sternbergiana. Males were positively correlated with the proportion of bare ground, again probably relating to preferred perching sites for mate location. Females were negatively correlated with Conospremum stoechadis probably indicating dense ground cover in degraded areas and Xanthorrhoea preissii probably an indicator at the site of more mature vegetation. Reserve management to improve vegetation quality may threaten the persistence of the butterfly within the reserve, whilst controlled burning to create even quite small new areas of habitat in an urban situation may be difficult to achieve. The creation of suitable habitat may be possible using mechanical means, provided the action of fire is not an essential component of habitat creation. As the western jewel appears to prefer degraded vegetation, it is possible that there may be opportunities for this species’ expansion within the urban environment provided that its mutualistic ant partner is also present.