To be or not to be—the effect of nature conservation management on flowering of Paeonia mascula (L.) Miller in Israel

Mount Meiron Nature Reserve is the largest Mediterranean reserve in Israel. Since its establishment, goat grazing and woodcutting have been prohibited and dense oak maquis has developed by succession. The succession of vegetation poses the risk of losing species. The peony (Paeonia masculla) is a locally endangered species in Israel, growing only in a small population in the Mount Meiron Nature Reserve with only 5% of plants flowering. We sought a management practice that would increase the flowering percentage of the peonies and secure the future of its population. We found that flowering peonies grew mainly in locations with about 47% direct sun radiation, while most plants grew under heavy shade with only 27% direct radiation. Creation of small gaps increased the flowering to 15-20%. To ensure the future of the peonies in the Mount Meiron Nature Reserve, small gaps must be created—even if this conflicts with broader current management policies.     

Age and size at first reproduction in the commercially exploited red coral Corallium rubrum (L.) in the Marseilles area (France, NW Mediterranean)

Among species life-history traits, size and age at first reproduction are particularly relevant to design meaningful conservation plans. The main goal of this study was to define the size at first reproduction of colonies of the precious red coral Corallium rubrum (L.) and determine their age, thanks to a new reliable method. Sampled colonies come from two sites at 40 m depth on the French Mediterranean coast near Marseilles. Furthermore, we report trends in reproduction parameters in relation to colony size. The smallest fertile colonies (<30 mm height class) were on an average 24.0 mm in height and 3.6 mm in basal diameter: these colonies were on an average between 7 and 10 years. The reproductive effort, i.e., percentage of gravid polyps per colony, was higher in large (>50 mm in height) and medium size colonies (30-50 mm) than in small ones (<30 mm). Our results indicate that management strategies for the conservation of red coral should lead to increase the abundance of large colonies to guarantee a good reproduction output. Suggested measures are minimal harvesting sizes and no-take areas in shallow habitats (<50 m).     

Accumulation of specific flavonoids in soybean (Glycine max (L.) Merr.) as a function of the early tripartite symbiosis with arbuscular mycorrhizal fungi and Bradyrhizobium japonicum (Kirchner) Jordan

This study is the first report assessing the effect of soil inoculation on the signalling interaction of Bradyrhizobium japonicum, arbuscular mycorrhizal fungi (AMF) and soybean plants throughout the early stages of colonisation that lead to the tripartite symbiosis. In a study using soil disturbance to produce contrasting indigenous AMF treatments, the flavonoids daidzein, genistein and coumestrol were identified as possible signals for regulating the establishment of the tripartite symbiosis. However, it was unclear whether soil disturbance induced changes in flavonoid root accumulation other than through changing the potential for AMF colonization. In this study, soil treatments comprising all possible combinations of AMF and B. japonicum were established to test whether (1) modifications in root flavonoid accumulation depend on the potential for AMF colonization, and (2) synthesis and accumulation of flavonoids in the roots change over time as a function of the early plant-microbial interactions that lead to the tripartite symbiosis. The study was comprised of two phases. First, maize was grown over 3-week periods to promote the development of the AM fungus Glomus clarum. Second, the interaction between soybean, G. clarum and B. japonicum was evaluated at 6, 10, 14 and 40 days after plant emergence. Root colonization by G. clarum had a positive effect on nodulation 14 days after emergence, producing, 30% more nodules which were 40% heavier than those on roots solely inoculated with B. japonicum. The tripartite symbiosis resulted in 23% more N₂ being fixed than did the simpler symbiosis between soybean and B. japonicum. The presence of both symbionts changed accumulation of flavonoids in roots. Daidzein and coumestrol increased with plant growth. However, development of the tripartite symbiosis caused a decrease in coumestrol; accumulation of daidzein, the most abundant flavonoid, was reduced in the presence of AMF.     

From genetic diversity and structure to conservation: Genetic signature of recent population declines in three mouse lemur species (Microcebus spp.)

The exceptional biodiversity of Madagascar is threatened by anthropogenic landscape changes that took place during the 2000 years of human colonization. This study focuses on the influence of geographic distance and forest fragmentation on genetic diversity and population differentiation of three rare, nocturnal, arboreal lemur species in northwestern Madagascar. Historic declines in population sizes as a consequence of forest fragmentation are quantified and dated. Eighteen sites were visited, and a total of 205 Microcebus ravelobensis, 45 M. bongolavensis and 78 M. danfossi were genotyped with eight microsatellite loci. Genetic differentiation among the sites, as measured by F_ST, ranged from 0.01 to 0.19. These values were significant in almost all cases and indicated genetic structure in the samples. Isolation-by-distance was detected in one species and a STRUCTURE analysis indicated that fragmentation further promoted genetic differentiation. Bayesian methods revealed that populations from all three species underwent a major demographic collapse of around two orders of magnitude. This decrease probably began after the arrival of humans, most likely within the last 500 years. This result suggests that anthropogenic changes may have been limited during the first 1500 years of human colonization in all three ranges. Two of the study species (M. danfossi, M. bongolavensis) lack effectively protected areas in their ranges. Consequently, quick conservation actions are now needed in order to secure the remaining genetic diversity of these species.     

Changes in agricultural management drive the diversity of Burkholderia species isolated from soil on PCAT medium

In order to assess the diversity of culturable Burkholderia populations in rhizosphere and bulk soil and to evaluate how different agricultural management regimes and land use history affect this diversity, four treatments were evaluated: permanent grassland; grassland converted into maize monoculture; arable land and arable land converted into grassland. Burkholderia isolates obtained on PCAT medium were grouped in 47 clusters using 16S ribosomal RNA gene based PCR-DGGE combined with BOX genomic fingerprinting (DGGE-BOX). The distribution of the isolates in the DGGE-BOX clusters was used to calculate the Shannon diversity index per treatment. Interestingly, we observed that the Burkholderia diversity was affected by changes in the agricultural management, since the highest diversity was observed in permanent grassland and in continuous arable land. In addition, the diversity tended to be higher in the rhizosphere than in the corresponding bulk soil. The use of species abundance models indicated that rhizosphere communities had more even distributions than communities collected from the bulk soil. Identification of isolates revealed that only 2% of these belonged to the B. cepacia complex and that the majority was assigned to either (1) new Burkholderia species or (2) Burkholderia species that had originally been isolated from soil. Isolates classified as B. hospita, B. caledonica and Burkholderia sp. ‘LMG 22934’ and ‘LMG 22936’ were found mainly in the arable land, while isolates belonging to Burkholderia sp. ‘LMG 22929’ and B. phytofirmans were associated with the grassland area. Another potentially new Burkholderia species, ‘LMG 22932’, was found in both areas, in close association with the maize rhizosphere.     

Natural history collections and the conservation of poorly known taxa: Ecological niche modeling in central African rainforest genets (Genetta spp.)

Natural history collections are crucial resources for conservation biology, particularly given the development of the ecological niche modeling (ENM) approach. We combined ENM with taxonomic investigations to address ecological, geographic, and phenotypic variation in the poorly known central African rainforest genets (Genetta cristata, Genetta servalina, Genetta victoriae) to provide new insights into their conservation status. Taxonomic identification was based on four discrete morphological characters. ENMs were developed using the Genetic Algorithm for Rule-Set Prediction (GARP), 10 environmental data layers and 310 georeferenced localities extracted from 667 museum specimens and 22 literature sources. Re-assessed taxonomic identifications allowed us to expand significantly the known range and ecological limits of the three genets. We suggested limited hybridization between G. cristata and G. servalina, in a zone of sympatry likely to cover central Cameroon, northwestern Gabon and Congo. ENM showed that almost all known occurrences were connected geographically by suitable ecological conditions, suggesting continuous potential distributions between supposedly isolated populations of the three genets. Our investigations indicated that G. cristata is distinct from G. servalina in morphology, geographic ranges and ecological niches, indicating species status for G. cristata, which, as such, should be the subject of appropriate conservation attention. Areas of predicted connectivity and actual zones of occurrence falling outside current forest cover should be surveyed to re-assess the status of the rainforest genets. Our study shows that combining ENM and taxonomic investigations can substantially improve data utilization from natural history collections, especially in the case of poorly known species.     

Long-term dynamics and population viability in one of the last populations of the endangered Spiranthes spiralis (Orchidaceae) in the Netherlands

During the last decades, most orchid species in much of Western Europe have suffered significant declines and the long-term survival of the remaining populations remains to a large extent uncertain. In particular, populations at range margins may be more prone to extinction than more central populations, as the former tend to be small and isolated, occur in ecologically marginal habitats and have a lower per-capita reproductive rate. In this study, we investigated the long-term dynamics and population viability of a population at the margin of its range of Spiranthes spiralis in the Netherlands. At present, only 2 out of 40 previously known populations persist. Individual plants were monitored for 24 years and their life span, flowering frequency and vegetative growth were determined. Individual plants showed large temporal variation in sexual and vegetative growth among years. The proportion of flowering plants varied from 0 (no plants were flowering) to 100 (all plants were flowering). Vegetative growth, on the other hand, increased when the number of individuals decreased. Dormancy was present, but occurred only in a few individuals. Using a non-structured population viability model, future prospects of this species were assessed. Calculation of extinction probabilities and estimated times to extinction using the diffusion approximation model showed that the species had a relatively high probability (79%) of surviving the next 20 years, whereas the median time to extinction was forty years. However, because 95% confidence intervals of the population growth included 1, we suggest that continued monitoring and additional genetic research are needed to assess the long-term viability of this species.     

Dispersal of the endangered flightless beetle Dorcadion fuliginator (Coleoptera: Cerambycidae) in spatially realistic landscapes

Habitat destruction and degradation are the major causes for the decline of the endangered grass-feeding beetle Dorcadion fuliginator in Central Europe. In the southern part of the Upper Rhine valley (border region of Switzerland, Germany and France) the habitat suitable for this flightless beetle has been reduced to small remnants of extensively managed dry grassland, usually surrounded by intensively cultivated agricultural fields or settlements. Using a mark-release-resight technique we examined movement patterns in three D. fuliginator populations to obtain basic information on the dispersal ability and longevity of this beetle. Estimated daily survival rates ranged from 88.8% to 90.8% in the populations examined. This corresponds to a mean life span of 10.5 days. Distances moved by D. fuliginator differed among populations. The beetles walked the largest distances in the verges of a field track. Several beetles moved distances of 20-100 m along the track, with a maximum distance of 218 m (a male in 12 days). The shortest displacements were recorded in the bank of the river Rhine, a narrow habitat surrounded by tarmac roads. We also assessed the spatial arrangement of 12 patches with D. fuliginator populations in two regions and estimated the size of each population over 4 years. Data on dispersal, daily survival, population size and spatial arrangement of patches were used to simulate patch-specific migration rates. The simulations suggested that in both areas the beetles regularly moved between neighbouring patches separated by distances shorter than 100 m, whereas patches separated by distances exceeding 500 m are isolated.     

水稻生育后期根系响应氮肥调控的蛋白作用机制分析

以大穗型水稻‘金恢809’为试验材料,设置前氮后移(施氮量的30%作基肥,30%作蘖肥,30%作穗肥,10%作粒肥)及传统氮肥(施氮量的40%作基肥,30%作蘖肥,30%作穗肥)施用两种处理,并采用双向电泳技术分析了水稻生育后期根系对前氮后移调控的蛋白响应机制。通过构建的不同氮肥处理下水稻开花后15 d根系蛋白2-DE电泳图谱,并结合MALDI-TOF/MS分析,共成功鉴定到57个出现差异表达的蛋白,其中40个在前氮后移处理下上调表达,17个下调表达。依据其蛋白功能可以归为12类,主要涉及信号转导,氨同化,胁迫与防御,糖酵解,三羧酸循环,氨基酸代谢、蛋白合成及折叠等代谢途径。研究发现水稻生育后期根系GTP结合的核蛋白、GDP解离抑制因子、液泡型H+-ATP酶亚基C会响应氮肥的调控而出现表达变化,并将信号传递到电压依赖性离子通道蛋白、液泡型ATP酶亚基C以及膜联蛋白p35,进而调节根系细胞间物质运输与信息的传递。本研究结果还表明,前氮后移的施肥方式,通过适当增加水稻生育后期氮肥的施用,调节根系糖类转换、糖酵解及三羧酸循环相关蛋白的表达,增加了根系ATP的供应;通过增强根系中清除过氧化氢系统及防御相关蛋白的表达,延缓了根系的衰老;通过上调谷氨酸脱氢酶、天冬氨酸转氨酶和谷氨酞胺合成酶的表达丰度,促进了根系对土壤中氮元素的吸收与转运。研究结果对于进一步明确水稻根系响应氮素调控的分子生态特性具有重要的理论与实际意义。     

Management options to reduce boat disturbance on foraging black guillemots (Cepphus grylle) in the Bay of Fundy

Boat disturbance of foraging black guillemots (Cepphus grylle) was studied at a breeding colony in the Bay of Fundy, Canada. Using observations from a cliff top, flushing behaviour was examined in relation to boat characteristics, guillemot behaviour, and environment conditions. The distance guillemots foraged from shore and the size, speed, and approach distance of boats were important factors predicting flushing probability. Guillemots foraged further from shore at low tide presumably making them more vulnerable to disturbance then. Using these results to identify the conditions that would minimize disturbance, management recommendations on boat speed and set-back distance were developed. At this site, a set-back distance of 600 m from shore with a speed limit of 25 km/h would reduce guillemot flushing probability to 10% most of the time. Although specific management options are proposed for this particular colony, the analytical approach used to identify an appropriate set back distance and some of the specific results are relevant to other locations and colonial waterbird species.     

Effects of earthworm density on growth, development, and reproduction in Lumbricus rubellus (Hoffm.) and possible consequences for the intrinsic rate of population increase

In this paper, the influence of earthworm density is assessed on the life-history parameters: growth, development, reproduction, and survival of Lumbricus rubellus (Hoffm.). Density ranges from two to nine earthworms in 1-l containers, corresponding to field densities of 300-1350 earthworms m⁻². Earthworms were kept under optimal laboratory conditions, with a surplus of food. The results show that at high earthworm density, individual growth is retarded, maturation delayed and cocoon production decreased, even when food is optimal. The integration of these results into a Dynamic Energy Budget model suggests that the food intake of individual earthworms is lower at the higher tested densities. This lower food intake is most probably driven by competition for space at the higher densities. The lower food intake results in a lower intrinsic rate of population increase which is negative at the highest tested density.     

Using community observations to predict the occurrence of malleefowl (Leipoa ocellata) in the Western Australian wheatbelt

The Malleefowl is a ground-dwelling bird species that has declined in distribution and abundance in Australia since European settlement. These declines have been exacerbated in the Western Australian wheatbelt by the extensive clearing of native vegetation for agricultural development. A wealth of opportunistic, presence-only data exists for this species but absence data required for distribution modelling is lacking. This situation is typical of many species distribution datasets. We sought to establish the distribution of malleefowl within the Western Australian wheatbelt (210 000 km²) and their choice of habitat within this broad region. We supplemented a large presence-only dataset of malleefowl sightings with absence data derived from a bird atlas scheme and used these data to effectively predict the distribution of the species for the wheatbelt using a combined GAM/GLM approach. Both datasets were derived largely from community sightings. The distribution of malleefowl within the Western Australian wheatbelt was associated with landscapes that had lower rainfall, greater amounts of mallee and shrubland that occur as large remnants, and, lighter soil surface textures. This study illustrates how community knowledge, coupled with solid ecological understanding, can play a key role in developing the knowledge base to inform conservation and management of species in agricultural landscapes.     

Life on the edge - High levels of genetic diversity in a cliff population of Bertya ingramii are attributed to B. rosmarinifolia (Euphorbiaceae)

Wind-facilitated migration of new genotypes into small, geographically disjunct populations should buffer them against local extinction. Bertya ingramii, a monoecious, wind-pollinated shrub, is restricted to three populations in a 4 km² area in eastern Australia. Populations are separated by deeply dissected gorges where it is unlikely that seeds are exchanged but where wind movement may facilitate pollen dispersal. Using 156 highly polymorphic ISSR markers, we found moderate genetic variation within and among populations of B. ingramii and less genetic diversity in a nearby and small population of the widespread Bertya rosmarinifolia. The smallest population of B. ingramii (<30 plants) had the highest genetic variation (65% polymorphic markers, Shannon Information Index = 0.30). AMOVA and a Bayesian analysis showed that molecular variance was equally distributed within and among populations suggesting that gene flow is as limited within as in among populations. Genetic distances between populations were only weakly explained by their relative geographic distances (mantel test, R² = 0.21, P = 0.001) but the distribution of private bands, the departure from Hardy-Weinberg equilibrium, and a UPGMA tree showed that the smallest population of B. ingramii was generally more similar to an upstream population of B. rosmarinifolia. Thirty-eight percent of bands in this small population of B. ingramii were exclusively shared with B. rosmarinifolia. This covert hybridisation may have been an ancient event but may be responsible for contemporary declines in germination and establishment in B. ingramii. The conservation implications are amplified by the endangered status of B. ingramii.     

Influence of prey variables, food supply, and river restoration on the foraging activity of Daubenton’s bat (Myotis daubentonii) in the Shibetsu River, a large lowland river in Japan

To conserve the foraging habitat of Daubenton’s bat (Myotis daubentonii) in a large lowland river, we investigated the influence on this bat of prey variables (number or biomass) and insect origin (aquatic or terrestrial). We tested the hypothesis that river restoration (re-meandering) conducted in the Shibetsu River, northern Japan, enhances foraging habitat quality by increasing the abundance of aquatic insects. From June to September 2004, flying insects were collected using Malaise traps in restored and channelised reaches in the Shibetsu River. Bat activity was recorded by bat detectors placed near the Malaise traps in each of the two reaches. Foraging activity of Daubenton’s bat was more strongly related to the number of insects than to biomass, and to adult aquatic insects than to terrestrial insects. The high dependence of Daubenton’s bat on aquatic prey was attributed to the fact that aquatic insect numbers were always higher than those of terrestrial insects. Contrary to the hypothesis, Daubenton’s bat was more active in the channelised reach than the restored reach in all months except June, and it synchronized its foraging activity with the seasonal distribution of adult aquatic insects. However, the study was undertaken just two years after restoration and the riparian vegetation had not yet established itself. Our results demonstrate the importance of aquatic insect abundance for Daubenton’s bat throughout the seasons in large lowland rivers. A further decrease in aquatic insects, associated with progressive anthropogenic alteration of river environments, undoubtedly exerts a harmful influence on the conservation of this species.     

New sources of resistance to race Ro1 of the Golden nematode (Globodera rostochiensis Woll.) among reputed duplicate germplasm accessions of Solanum tuberosum L. subsp. andigena (Juz. et Buk.) Hawkes in the VIR (Russian) and US Potato Genebanks

Cultivated Solanum tuberosum L. subsp. andigena is well known as a rich source of valuable traits for potato breeding, especially for resistance to diseases and pests. The golden potato cyst nematode, Globodera rostochiensis Woll., is considered to be one of todays most serious hindrances to potato production in Europe and North America. Thus, the breeding of new cultivars that have resistance to PCN is of great importance. The USPG (USA) and VIR (Russian) potato genebanks, as well as others, maintain many samples of primitive cultivated and wild potato species originating from Latin America. Many of these samples are assumed to be genetically duplicated because the material in both genebanks came from the same original source. A joint investigation of new genotypes of subsp. andigena forms resistant to potato cyst nematode (PCN) was carried out on samples of subsp. andigena at VIR with reputed duplicate samples at USPG. After careful screening, 14 samples which possessed resistance to PCN were identified. A high level of this resistance was transmitted to sexual progeny at a high frequency for all of the selections. Eleven of the accessions found to be resistant have reputed duplicates in USPG that were not previously known to be resistant. Thus, this research not only broadens the choice of parents available for resistance breeding, but identifies model materials for future research to test the parity of PCN resistance among reputed duplicate samples in the two genebanks.