Phyllostomid bat diversity in a variegated coffee landscape

We examined bat diversity at two different spatial scales: habitat and matrix, in the Quindío coffee region in Colombia. Habitats were: forest, shaded coffee and associated coffee; and matrices were: associated coffee (M1) and shaded coffee (M2). Three sampling sites from each type of habitat were located at each matrix. The forest areas of the Quindío region are severely fragmented and less structurally complex than coffee patches. The shaded coffee habitat had patches that were larger and more complex. In spite of limited patch size and lower complexity, the forest remnants were those with greatest species richness and demonstrated clear similarities even between the two matrices. This was not observed in coffee plantations, neither in associated coffee nor shaded coffee. On the landscape scale, M2 showed lower β diversity and greater edge density (ED) than M1. This fact explains that greater connectivity between different habitats exists in M2 than in M1. Our results suggest that production and conservation are compatible, as maintenance of forest remnants in a mosaic structure by landowners of the vegetation is sufficient to conserve phyllostomid bats at landscape level.     

Collembolan grazing affects the growth strategy of the cord-forming fungus Hypholoma fasciculare

Mycelia of cord-forming fungi show remarkable patterns of reallocation of biomass and nutrients indicating an important role of these, often extensive, organisms in the spatial translocation of energy and nutrients in forest soils. Despite the rich tradition of interaction studies between soil microarthropods and fungi, the spatial implications of these interactions, due to the potential growth responses of the fungi and to the translocation of energy and nutrients within the mycelial network, have been largely ignored. In this paper we analyse fungal growth responses in two-dimensional model systems composed of compressed soil, the cord-forming fungus Hypholoma fasciculare and three fungivorous Collembolan species. We hypothesised that (i) the highly co-ordinated nature of cord-forming fungi would lead to growth responses following collembolan grazing, and that, (ii) such changes are dependent on grazing intensity, and (iii) changes are dependent on the species grazing. Mycelial extent and hyphal cover decreased with increasing grazing density; at highest grazing density also the fractal dimension of the mycelial border decreased, indicating a less branched foraging front due to the regression of fine hyphae and the development of mycelial cords. Effects differed greatly between collembolan species although they exerted comparable grazing pressure (the smaller species were added in larger numbers according to their allometric size-metabolic rate relationships): while grazing by Folsomia candida resulted in less mycelial extension and hyphal cover, these variables were not affected when Proisotoma minuta and Hypogastrura cf. tullbergi grazed. The effects of a species mix suggested an additive effect of the component species. This shows that fungal mycelia may suffer from damage caused by few but large collembolans, affecting extension as well as coverage of the mycelium, but that fungi may compensate for the biomass loss caused by more but slightly smaller collembolans. In about 20% of the model systems H. fasciculare switched from a growth pattern with a broad contiguous foraging front and uniform growth in all directions to a pattern with fast growing sectors while other sectors stopped growth completely. The switch occurred in grazed systems exclusively; thus we interpret this observation as a fugitive response and as a strategy for quickly escaping from places where grazing pressure is experienced.     

Converting Australian tropical rainforest to native Araucariaceae plantations alters soil fungal communities

Native rainforest tree plantations are increasingly viewed as potentially important for high value timber production and provision of a range of ecological services in tropical and subtropical areas. In order to determine the extent to which conversion of rainforest to native Araucariaceae plantation influences soil fungi, we compared soil fungal communities under native rainforest and 73-74 year-old Araucaria bidwillii, Araucaria cunninghamii and Agathis robusta plantations at Gadgarra State Forest, Queensland, Australia. Following direct extraction of DNA from soil, terminal restriction fragment length polymorphism (T-RFLP) analysis of rDNA internal transcribed spacer (ITS) regions was conducted. Ordination analysis of the T-RFLP data revealed significant separation of the fungal communities according to forest type along the first canonical axis, with the native rainforest samples separating from the three Araucariaceae plantations along the second axis. Overall, the most abundant ITS sequences in clone assemblages from the four forest types were Ascomycota, followed by Basidiomycota, Zygomycota and Chitridomycota, however their relative importance varied in individual forest types. The results indicate that conversion of tropical rainforest to monoculture plantations of native trees can significantly alter soil fungal diversity.     

Species diversity and habitat fragmentation: frogs in a tropical montane landscape in Mexico

We evaluate the alpha (within patch species richness), beta (spatial turnover among patches) and gamma (landscape) diversity of frogs in a tropical montane cloud forest (TMCF) in central Veracruz, Mexico in order to assess (1) the influence of forest fragmentation on frog assemblages, (2) the importance to diversity of the various elements of the landscape matrix, including the shaded coffee plantations and cattle pastures that surround TMCF and (3) to identify the frog guilds most affected by habitat transformation. We sampled ten sites between May 1998 and November 2000: five TMCF fragments and five anthropogenic habitats. For the entire landscape, we registered 21 species belonging to six families. 100% of these were found in the TMCF fragments and 62% in the surrounding mosaic of anthropogenic habitats. Gamma diversity (γ) is determined to a greater extent by species exchange (β) than by local species richness (α). Elevational variation, the degree of conservation of the vegetation canopy and fragment size appear to determine the species diversity of this landscape. Large species, terrestrial species, those whose eggs develop outside water, and those whose larvae develop in the water seemed to be most affected by habitat transformation. On its own, even the largest and most species-rich cloud forest fragment is not capable of preserving the current anuran diversity. Neither are the shaded coffee plantations that are interspersed among and link the patches of TMCF. However together they form a diverse system of habitats crucial to species conservation in this landscape.     

Migratory songbird use of shade coffee in the Venezuelan Andes with implications for conservation of cerulean warbler

Although previous studies have demonstrated high use of shade coffee plantations by Neotropical migratory birds, we still have a poor understanding of the suitability of shade coffee plantations as habitat on the wintering grounds. We studied density, body condition, and survivorship of Neotropical migrants, with emphasis on cerulean warbler (Dendroica cerulea), in primary forest and shade coffee plantations in Venezuela. We worked in three primary forest sites and three shade coffee plantations on the western slope of the Cordillera de Mérida of the Andes Mountains. At each site, we surveyed migrants with distance-based line transects and mist-netted and banded migrants during November–February 2005/06 and 2006/07. In addition, we estimated apparent monthly survival for cerulean warbler based on 29 color-banded individuals. Densities of migrants were 3–14× higher in shade coffee plantations than primary forest sites, even after accounting for differences in detectability. Apparent monthly survival of cerulean warblers was estimated at 97% and overwinter persistence was similarly high. In addition, cerulean warblers demonstrated high between-season fidelity, with 65% of the birds banded the first year being resighted during the second year. Interestingly, immature birds returned at nearly half the rate as did adults. Banding data indicated that body condition increased significantly as the season progressed for cerulean warblers, Tennessee warblers (Vermivora peregrina), and American redstarts (Setophaga ruticilla). Collectively, these data provide evidence that shade coffee plantations offer high quality wintering habitat for Neotropical migrants, including cerulean warblers.     

Ectomycorrhizal fungi introduced with exotic pine plantations induce soil carbon depletion

Exotic pine plantations are promoted for their presumed capacity to provide a net sink of atmospheric C. Millions of hectares worldwide will be subjected to conversion into plantations during the next decades. However, pine introductions are known to result in a marked depletion of soil C, a phenomenon which has remained unexplained. We studied plantations in paramo grasslands of Ecuador, where the effect of the exotic introduction of radiata pines (Pinus radiata) and their accompanying ectomycorrhizal fungi can be studied in isolation from other ecosystem disturbances. We suggest that ectomycorrhizal fungi can extract C previously accumulated by paramo grasslands based on (a) a drastic simplification of the ectomycorrhizal community shown by direct DNA identification, (b) a loss of up to 30% soil C within <20 years of plantation, (c) stable C isotope values in fungal fruitbodies which are closer to grassland than pine values, and (d) radiocarbon dating of fruitbodies indicating relatively old C sources for fruitbody formation. Species number in the ectomycorrhizal guild drops to only three fungal species per plantation compared to approximately 100 in comparable native pine stands. Our results provide evidence for a dynamic role of ectomycorrhizal fungi in soil C processing, and question the strategy of introducing pine plantations as a general solution to reduce mounting atmospheric CO₂ levels.     

Transition from Forest‐based to Cereal‐based Agricultural Systems: A Review of the Drivers of Land use Change and Degradation in Southwest Ethiopia

The southwestern Ethiopian montane forests are one of the most species‐rich ecosystems and are recognised globally as a priority area for the conservation of biodiversity. Particularly, in contrast to the drier central and northern Ethiopian highlands, they have received little attention by researchers. Here, we review changes to agricultural systems in and around these forests that are known as the genetic home of coffee (Coffea arabica L.) and that are important to the livelihoods of many rural people who have developed traditional management practices based on agro‐ecological knowledge, religious taboos and customary tenure rights. We explored the impacts of conversions to agroforestry and cereal‐based cropping systems on biodiversity, soil fertility, soil loss and the socio‐economic conditions and culture. The increasing trend of cereal cropping, resettlement and commercial agriculture causes the deterioration of natural forest cover in the region and threatens biodiversity, land quality, sustainable, traditional farming practices and the livelihood of the local community. Large‐scale plantations of tea, coffee, soapberry locally known as endod (Phytolacca dodecandra L'Hér.) and cereals have resulted in biodiversity loss. Following the conversion of forests, cultivated fields exhibit a significant decline in soil fertility and an increase in soil loss as compared with the traditional agroforestry system. The establishment of a sustainable agricultural system will require a change in paradigm, whereby the intrinsic values of the traditional forest‐based agricultural system are recognised, rather than the ongoing mimicking of agricultural policies that were developed for the open fields of central Ethiopia. Copyright © 2016 John Wiley & Sons, Ltd.     

A vulnerability analysis of the temperate forests of south central Chile

Areas of the landscape that are priorities for conservation should be those that are both vulnerable to threatening processes and that if lost or degraded, will result in conservation targets being compromised. While much attention is directed towards understanding the patterns of biodiversity, much less is given to determining the areas of the landscape most vulnerable to threats. We assessed the relative vulnerability of remaining areas of native forest to conversion to plantations in the ecologically significant temperate rainforest region of south central Chile. The area of the study region is 4.2 million ha and the extent of plantations is approximately 200 000 ha. First, the spatial distribution of native forest conversion to plantations was determined. The variables related to the spatial distribution of this threatening process were identified through the development of a classification tree and the generation of a multivariate, spatially explicit, statistical model. The model of native forest conversion explained 43% of the deviance and the discrimination ability of the model was high. Predictions were made of where native forest conversion is likely to occur in the future. Due to patterns of climate, topography, soils and proximity to infrastructure and towns, remaining forest areas differ in their relative risk of being converted to plantations. Another factor that may increase the vulnerability of remaining native forest in a subset of the study region is the proposed construction of a highway. We found that 90% of the area of existing plantations within this region is within 2.5 km of roads. When the predictions of native forest conversion were recalculated accounting for the construction of this highway, it was found that approximately 27 000 ha of native forest had an increased probability of conversion. The areas of native forest identified to be vulnerable to conversion are outside of the existing reserve network.     

Effects of soil degradation and management practices on the surface water dynamics in the Talgua River Watershed in Honduras

When tropical forests are felled, subsequent land uses affect surface runoff, soil erosion, and soil compaction. In some cases, they can markedly change the hydrology of a region with disastrous effects on human life. The objective of this paper is to investigate the effect of rainfall on stream hydrology due to conversion of primary forests to agriculture. Near surface water dynamics were compared for three land uses on the steep hillsides in the Talgua River Watershed in Honduras: degraded grass‐covered field; traditional coffee plantation; and primary forest. Infiltration and surface runoff rates were measured using several methods. A clear difference was observed in hydraulic conductivity between the degraded and non‐degraded lands. The degraded grass‐covered hillslopes developed a surface restrictive layer with a low saturated hydraulic conductivity of 8 to 11 mm/hr, resulting in more frequent overland flow than traditional coffee plantation and primary forest. Soils under the latter two land‐use types maintained high infiltration capacities and readily conducted water vertically at rates of 109 and 840 mm/hr, respectively. Dye tests confirmed that the coffee plantation and primary forest both maintained well‐connected macropores through which water flowed readily. In contrast, macropores in the degraded soil profile were filled by fine soil particles. Soils in the degraded grass‐covered field also showed more compaction than soils in the coffee plantation. Copyright © 2004 John Wiley & Sons, Ltd.     

Bat diversity in montane rainforest and shaded coffee under different management regimes in southeastern Chiapas, Mexico

Differences in alpha and beta bat diversity among montane rainforest and five shaded coffee plantations under different management regimes, as well as some environmental factors and vegetation parameters influencing bat richness, were evaluated for the first time in southeastern Chiapas, Mexico. In each site, bats were captured every 2 months from March 2004 to July 2005, with six mist-nets, during two nights, using the capture-recapture method. We captured 2970 individuals of 43 bat species. Montane rainforest had the greatest alpha diversity (H′ = 2.681; n = 37), whereas alpha diversity was similar among coffee plantations (H′ = 2.229-2.364; n = 23-26). The number of frugivorous and nectarivorous species was similar among the sites; the greatest exchange in species composition (beta diversity) occurred for insectivorous bats, which reduce their number in coffee plantations as pesticides are incorporated. Bat richness species was significantly related to the number of vegetation strata, height, and cover of trees. We suggest that coffee plantations could act as corridors, facilitating connection among different elements of the landscape in the Sierra Madre de Chiapas for some frugivorous and nectarivorous bats.     

Soil biological changes for a natural forest and two plantations in subtropical China

Conversion of natural forests into pure plantation forests is a common management practice in subtropical China. To evaluate the effects of forest conversion on soil fertility, microbe numbers and enzyme activities in topsoils (0-10 cm) were quantified in two 33-year-old monoculture plantations of Castanopsis kawakamii Hayata (CK) and Cunninghamia lanceolata Lamb. (Chinese fir) (CF), and compared to a neighboring relict natural C. kawakamii forest (NF), in Sanming, Fujian. Five soil samples were collected once each in January, April, July, September and November in 2000 in each forest for laboratory analysis. Over the sampling year, there were significant differences for bacteria, fungi and actinomycetes between forests and between seasons (P < 0.05). The largest bacteria and fungi populations were in NF, while CF contained the greatest number of actinomycetes. There were also significant differences (P < 0.05) with microbial respiration for forests and seasons. Additionally, compared with NF, urease and acid phosphatase were significantly lower (P < 0.05) in CK and CF. Also, the correlations of soil hydrolysable N and available P to soil microbial and enzymatic activities were highly significant (P < 0.01). Thus, to alter the traditional Chinese fir monoculture so as to mimic the natural forest conditions, managing mixed stands of Chinese fir and broadleaf trees or conducting crop rotation of conifers and broadleaf trees as well as minimizing forest disturbances like clear-cutting, slash burning and soil preparing, could be utilized.     

Soil fungal communities differ in native mixed forest and adjacent <Emphasis Type="Italic">Araucaria cunninghamii</Emphasis> plantations in subtropical Australia

Purpose  

Commercial monoculture plantations of the native Australian Araucaria cunninghamii are common in subtropical and tropical Queensland and are generally established following clearing of native mixed forest. The consequences of such forest conversion for soil fungal communities, however, have not been assessed in detail.     

Alkali-extractable soil organic matter: An important factor affecting the mycelial growth of ectomycorrhizal fungi

Significant effects of two fractions of alkali-extractable soil organic matter (AEOM) extracted from three different soils (agricultural soil, soil from deciduous forest, soil from spruce monoculture) on mycelial growth of 17 isolates of ectomycorrhizal fungi were observed. Growth of Lactarius deterrimus, Meliniomyces bicolor and one of the isolates of Leccinum aurantiacum was significantly stimulated by acid-insoluble fraction extracted from all three soils. The stimulatory effects were frequent but inhibition of mycelial growth of some isolates was also observed. The fungal response to the presence of the organic extract in the nutrient medium was isolate-specific rather than species-specific. Organic matter extracted from different source soils affected differently the mycelial growth, the largest number of stimulatory effects being observed in an experiment where the extract was richest in trace elements Zn and Cu. At the same time, the observed stimulatory effects were not attributable to increased concentrations of trace elements in the nutrient medium. The results indicate that soil may be used as a source of extractable organic fractions which, when used as a cultivation medium additive, may significantly improve the growth of responsive fungal isolates. Under natural conditions, AEOM (traditionally designated humic substances) represent a potential factor affecting the composition of cenosis of ectomycorrhizal fungi in soil.     

Decline of soil fertility during forest conversion of secondary forest to Chinese fir plantations in subtropical China

The effects of forest conversion on soil fertility are still not well understood in subtropical zones. This issue was addressed by comparing chemical properties of soil in a secondary forest and a Chinese fir (Cunninghamia lanceolata Hooker) plantation at the Huitong Experimental Station of Forest Ecology. Total N, available P, ‐N, cation exchange capacity (CEC) and exchangeable Al³⁺ and H⁺ of soil were significantly lower in the pure Chinese fir plantation (PCP) than in the secondary forest while soil organic carbon (SOC), total K and exchangeable Na⁺ had a tendency to decrease in the PCP. In contrast, soil pH and percentage base saturation (PBS) significantly increased due to forest conversion, and available K, ‐N and exchangeable Ca²⁺, Mg²⁺ and K⁺ tended to increase in the PCP. Some underlying processes responsible for the differences in soil fertility between the secondary forest and the Chinese fir plantation were low litterfall and root input to soil and site preparation in coniferous plantations. There was no significant difference in the effect of slope position on chemical properties of soil in the PCP and the secondary forest. Results indicated that the conversion of secondary forests to coniferous plantations leads to a decline in soil fertility. Copyright © 2010 John Wiley & Sons, Ltd.     

阔叶幼林取代杉木林后的土壤肥力研究

研究了3种阔叶混交幼林的土壤肥力，并将其肥力特征与杉木幼林进行对比研究。3种林分的立地条件相似常绿阔叶混交林1由12种观赏树种组成，常绿阔叶混交林2由7种速生乡土阔叶树种组成，常绿阔叶混交林3由12种阔叶树种组成。结果表明，各林地的土壤呈强酸性。常绿阔叶混交林1的土壤有机质、全氮和有效磷含量居各林地之首，其余的养分含量也大于或近似于杉木林地；常绿阔叶混交林2的全磷、全钾、有效氮、有效钾含量在4种林分中最高，有机质、全氮和有效磷含量也较高，说明这两种阔叶混交林有效地改善了土壤养分状况。常绿阔叶混交林3的土壤有机质、全氮和有效氮含量大于杉木林地，但是全磷、全钾、有效磷、有效钾含量小于后者。常绿阔叶混交林地1和常绿阔叶混交林地2的细菌、真菌和放线菌数量大于杉木林地，脲酶、磷酸酶、过氧化氢酶活性也较高，表明这2种阔叶混交林显著地改善了林地肥力。     

Invertebrate grazing affects nitrogen partitioning in the saprotrophic fungus Phanerochaete velutina

The heterogeneity of nutrients in forest soils is governed by many biotic and abiotic factors. The significance of nutrient patchiness in determining soil processes remains poorly understood. Some saprotrophic basidiomycete fungi influence nutrient heterogeneity by forming large mycelial networks that enable translocation of nutrients between colonized patches of dead organic matter. The effect of mycophagous soil fauna on these networks and subsequent nutrient redistribution has, however, been little studied. We used a soil microcosm system to investigate the potential effects of a mycophagous collembola, Protaphorura armata, on nutrient transfer within, and nutrient loss from, the mycelium of a saprotrophic basidiomycete fungus, Phanerochaete velutina. A ¹⁵N label, added to central mycelium, was used to track nitrogen movement within the microcosms across 32 days. Although collembola grazing had little impact on δ¹⁵N values, it did alter the partitioning of ¹⁵N between different regions of mycelia. Less ¹⁵N was transferred to new mycelial growth in grazed systems than in ungrazed systems, presumably because collembola reduced fungal growth rate and altered mycelial morphology. Surprisingly, collembola grazing did not increase the mineralization of N from mycelium into the bulk soil. Overall, our results suggest that mycophagous soil fauna can alter nutrient flux and partitioning within fungal mycelium; this has the potential to affect the dynamics and spatial heterogeneity of forest floor nutrients.     

Temporal changes in fertility and microbial properties of soil in forest-converted oil palm plantations in Okomu forest reserve,Nigeria

Evidence of the impacts of land-use change on soil biological activities, a determinant of nutrient cycling in soil, will provide a better understanding of soil health and productivity. The study investigates temporal changes in soil chemical and microbial properties in a forest converted to oil palm plantation. Soil samples from four locations: native forest and Elaeis guineensis plantations of 2-, 13- and 14-year were collected. Total carbon C and N were significantly higher (p < 0.05) in the native forest (NF) followed by 14- and 13-year E. guineensis plantations respectively. Microbial biomass carbon (MBC) and nitrogen (MBN) in NF were significantly higher (p < 0.05) than in the E. guineensis plantations. There were no significant differences in the microbial biomass phosphorus (MBP) among the E. guineensis plantation of all ages. The qCO₂ in the 13- and 14-year E. guineensis plantations was higher than in NF and 2-year E. guineensis plantation. There was a positive correlation between MBC, MBN, MBP and pH, P, TC, and TN. These results indicated that conversion of native forest to E. guineensis plantation affected soil nutrient and microbial properties. And there could be a return to healthy soil condition as age of E. guineensis plantation increased.     

Rapid incorporation of carbon from ectomycorrhizal mycelial necromass into soil fungal communities

Ectomycorrhizal mycelial necromass is an important source of carbon for free-living microorganisms in forest soils, yet we know little either of its fate when it enters soil or of the identity of microbes that are able to utilise mycelium as their energy source. Here we used ¹³C-labelled mycelium of the ectomycorrhizal fungus Pisolithus microcarpus in laboratory incubations in combination with DNA-stable isotope probing (SIP) to determine the identity of functionally active soil fungi that can utilise dead mycelium. We also used solid-state nuclear magnetic resonance (NMR) spectroscopy to detect parallel changes in the abundance of key biochemical constituents of soil. A decrease in bulk soil ¹³C concentration together with rapid loss of glycogen and chitin-glucan during the 4 week incubations suggested that dead mycelium was rapidly turned over. Further, ¹³C was incorporated into fungal DNA within 7 days of addition to soil. DNA-SIP also revealed a dynamic community of functionally active soil fungi. By applying DNA-SIP and NMR in parallel, our data show that carbon from decaying ectomycorrhizal mycelium is rapidly transformed and incorporated into free-living soil fungi. This finding emphasises that dead extra-matrical mycelium is an important source of labile carbon for soil microorganisms.     

Fertility Characteristics of Oxic Dystrustepts under Natural Forest,Rubber, and Teak Plantations in Different Seasons,Kerala, South India

Influences of three different vegetations (forests, teak plantation, and rubber plantation) on certain soil fertility parameters of Oxic Dystrustepts in the Western Ghats of southern India are compared. Soil samples collected from 10 different sites under each of the three vegetations in different seasons are analyzed. Soil sampling and physicochemical analyses were carried out as per standard methods. Significant variation was found in soil parameters over the plantations and forest in different seasons. Even though the rubber plantations received chemical fertilizers during two seasons, the average plant-available phosphorus alone exceeded in this soil than that in the forest soil. Specific influence of vegetations on fertility parameters in Oxic Dystrustepts could be traced. The influence of rubber plantations on soil fertility was more negative than that of teak plantations. Vegetational influence on soil fertility characteristics has applications in the development of sustainable agro-ecosystems in biodiversity-rich tropics.     

A comparative study on chemical characteristics of tropical soils from volcanic material under forest and agriculture

Abstract

An investigation was conducted to compare differences in chemical characteristics of Costa Rica soils under continuous cultivation and under forest vegetation. Inceptisols from young volcanic material under forest, sugar cane, coffee and pasture, respectively, were sampled in the San Carlos region of Costa Rica, and analysed for pH, organic matter, N, Ca, Mg, K, Na, Al, Fe, Zn and Mn contents. Indications were obtained that continuous cropping for 1 to 22 years with sugar cane resulted in a decrease in Ca and Mg content and an increase in acid extractable Al concentrations, compared to amounts found in forest soils. In soils under coffee the only significant changes were a reduction in soil organic matter, N and Al contents. Exchangeable bases decreased slightly during the first two years, but in fields 15 years under coffee, the content of exchangeable bases was affected slightly, except for a relatively marked decrease in amounts of Mg. Conversion into pasture maintained soil fertility at a level comparable to that found in the forest soil ecosystem. It was concluded that differences in vegetational ecosystems caused soil chemical changes, but deforestation in the tropics did not necessarily result in rapid soil degradation processes. The magnitude of the data showed that the soil in the San Carlos region of Costa Rica had been cultivated for at least 10 to 20 years without producing evidence of excessive deterioration.